TCONS_00056516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056516
Unique NameTCONS_00056516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056516 ID=TCONS_00056516|Name=TCONS_00056516|organism=Clytia hemisphaerica|type=transcript|length=1267bp
agtcgaTATAAAATATAACAGCAAGATACTGTAAGAGAAGAGAAAGATGA
GAGTGAGAACAGAACTTCGATTTGAGGAGATTAAAGAAAACACAAACGAA
AAAGAGCGTGCACGAAAAATCGACGACCAGGAGAAATGGAGCAcgttttt
caacaaaattgtgAAATCATATTTTAGTGATCGTGCATTTGAGAGATTTC
ATCATGAATTTGAACCAGCTCAACATCGGTTGGACTGTAGAGTACCTTCT
CCAGGGGAATTCAAATGCCAGCAGTTTTCAAACCCTGgttcaaagaaatc
aaaacgaAAATTGTTGATTAAAGATCCAGTCAATGAAGAAGTAAAAGAGT
CCAATGATggtaaaaagaagaaatttgtcaagaaCGGCTGTGGTAAACCA
TGGAATTCCAATCTATGTCTCACTAAATTTAACTGCTTGATTGAGGACGA
CAAGGAAGGTATCGTCTTGGTAGTGCACCTACGTGAATATGGTCAACGAT
GTGGACACTGTCAAAACCGATATGAAAACCCAAGTTTTGAAGATTATGTT
CTAGACATCATGATGTATTGGCTACTAAGCATGATACTTGAAGgTATTTT
CGACGTTGTTGATCCGTCAATTGCCGTTAATCCTCAAGACATGGGTTATT
ACCATCGAAGACGTTTTTCTAGGAAAGTTGACAAGGACGGAGAAGTGGTT
GTTCAGCGCAGGAGGGGTCCACCTCACAATAGAGCAATGTGCCAAGCCTG
TGCAGACAGCAAAGGTTGTGGTTATGTGGATGCAAAAAAAAAgccaagaa
aaagaagaaacagagGGGCGAATCAGAACAACCAAGGAAACAACGGTGGT
ACTCAACCTCAAGGAGAAAATGCTGGTGGTGGACAACAACAACAGGGCGG
TAGTCAACAAGAGAGAGGAGGTCAGCGGCAACCAGGAGGGAACAGTCATA
CCCAACGACGAAGAAGACAAAGACAGCGACAACATGAACGCCAAAACAAT
CAACAAGAATAAAGTTGACCATAAAAGCCGTTATCGTGTACCCATATATT
CAGACGATCGAATTTTCAgcatttgattttttaatcaAGTTACATACCAA
CCAGGGATAATGATGACTGAAAACGAGTATTACTGGCAACAATGGGTATC
TAACACTCATGAATTCTTTTGACTTTGATTTACACTGATAGACTTTCTTG
GAGATACTGTTCAATCAATGAGCCAGACGTAAttgatcgaaccaatcgaa
cggtattttaatcgaac
Run BLAST on NCBI

protein sequence of TCONS_00056516-protein

>TCONS_00056516-protein ID=TCONS_00056516-protein|Name=TCONS_00056516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MRVRTELRFEEIKENTNEKERARKIDDQEKWSTFFNKIVKSYFSDRAFER
FHHEFEPAQHRLDCRVPSPGEFKCQQFSNPGSKKSKRKLLIKDPVNEEVK
ESNDGKKKKFVKNGCGKPWNSNLCLTKFNCLIEDDKEGIVLVVHLREYGQ
RCGHCQNRYENPSFEDYVLDIMMYWLLSMILEGIFDVVDPSIAVNPQDMG
YYHRRRFSRKVDKDGEVVVQRRRGPPHNRAMCQACADSKGCGYVDAKKKP
RKRRNRGANQNNQGNNGGTQPQGENAGGGQQQQGGSQQERGGQRQPGGNS
HTQRRRRQRQRQHERQNNQQE
Run BLAST on NCBI

transcript from alignment at scaffold_276:680552..683403-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056516 ID=TCONS_00056516|Name=TCONS_00056516|organism=Clytia hemisphaerica|type=transcript|length=2852bp|location=Sequence derived from alignment at scaffold_276:680552..683403- (Clytia hemisphaerica)
AGTCGATATAAAATATAACAGCAAGATACTGTAAGAGAAGAGAAAGATGA
GAGTGAGAACAGAACTTCGATTTGAGGAGATTAAAGAAAACACAAACGAA
AAAGAGCGTGCACGAAAAATCGACGACCAGGAGAAATGGAGCACGTTTTT
CAACAAAATTGTGAAATCATATTTTAGTGATCGTGCATTTGAGAGATTTC
ATCATGAATTTGAACCAGCTCAACATCGGTTGGACTGTAGAGTACCTTCT
CCAGGGGAATTCAAATGCCAGCAGTTTTCAAACCCTGGTTCAAAGAAATC
AAAACGAAAATTGTTGATTAAAGATCCAGTCAATGAAGAAGTAAAAGAGT
CCAATGATGGTAAAAAGAAGAAATTTGTCAAGAACGGCTGTGGTAAACCA
TGGAATTCCAATCTATGTCTCACTAAATTTAACTGCTTGATTGAGGACGA
CAAGGAAGGTATCGTCTTGGTAGTGCACCTACGTGAATATGGTCAACGAT
GTGGACACTGTCAAAACCGATATGAAAACCCAAGTTTTGAAGATTATGTT
CTAGACATCATGATGTATTGGCTACTAAGCATGATACTTGAAGGTGAGAA
AGTTACAACTGTTTAATTCAACTAACTCGCTCGCGATGCATTTACTCTTA
GGCTCCAAATAAACGCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCCCT
CCCCGTTTATTTGGAACCTAAGAGTACTGCTTGATTGGACTTCGGTCACG
ACTTTGACGGACTTTTCTGAAACAATAAACGCAAGCTTCATCAGGTATTT
ACCCTGAGTATCAGAGGTTGAGTTTTCAAAGAATATAATCAAGGGTCCGT
TTCTTAATTTTCGATTAAATCTCGATTAGCATTTTGAAAAATGTTAGCAA
AAAATTTAAGCTAATCGGCCGCCAATCCAAAGTTTTCAAAGAATATATTA
ACCTCCGAAGACCAATGATAGAAATTTTATCGCGCATGTGTCAATCTAAT
CACTGTAGAAAAAATCAAAGATTTTGTATTGATGACAATTTTTAGTTGTG
TTTTCAACGACGGGAATAAAAATATAAACTTTGAACTTCATGGTTCATCC
AAGATCTTGGATGGTCGTATGGTTACAGGCACAGCGTCGATATATGATTT
CGACCTGTGCTTTTCACGGTATCAGGTATTGATTTGGCTTGACCAATTTT
ACATATATAAAAAGCCCTTTGATTCAAATCCCTTCAAATCTTAGGAAGGT
ATAGGTATAAAAGCTCTTCAAAGATAGAAGGAATAAGTTAGGCCTAAGTA
TGTCAACCTTCTTTTTTGTTTTCTTTAGGTATTTTCGACGTTGTTGATCC
GTCAATTGCCGTTAATCCTCAAGACATGGGTTATTACCATCGAAGACGTT
TTTCTAGGAAAGTTGACAAGGACGGAGAAGTGGTTGTTCAGCGCAGGAGG
GGTCCACCTCACAATAGAGCAATGTGCCAAGCCTGTGCAGACAGCAAAGG
TTGTGGTTATGTGGATGCAAAAAAAAAGCCAAGAAAAAGAAGAAACAGAG
GGGCGAATCAGAACAACCAAGGAAACAACGGTGGTACTCAACCTCAAGGA
GAAAATGCTGGTGGTGGACAACAACAACAGGGCGGTAGTCAACAAGAGAG
AGGAGGTCAGCGGCAACCAGGAGGGAACAGTCATACCCAACGACGAAGAA
GACAAAGACAGCGACAACATGAACGCCAAAACAATCAACAAGAATAAAGT
TGACCATAAAAGCCGTTATCGTGTACCCATATATTCAGACGATCGAATTT
TCAGCATTTGATTTTTTAATCAAGTTACATACCAACCAGGGATAATGATG
ACTGAAAACGAGTATTACTGGCAACAATGGGTATCTAACACTCATGAATT
CTTTTGACTTTGATTTACACTGATAGACTTTCTTGGAGATACTGTTCAAT
CAATGAGCCAGACGTAATTGATCGAACCAATCGAACGGTATTTTAATCGA
AC

Coding sequence (CDS) from alignment at scaffold_276:680552..683403-

>TCONS_00056516 ID=TCONS_00056516|Name=TCONS_00056516|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_276:680552..683403- (Clytia hemisphaerica)
GTATTTTCGACGTTGTTGATCCGTCAATTGCCGTTAATCCTCAAGACATG
GGTTATTACCATCGAAGACGTTTTTCTAGGAAAGTTGACAAGGACGGAGA
AGTGGTTGTTCAGCGCAGGAGGGGTCCACCTCACAATAGAGCAATGTGCC
AAGCCTGTGCAGACAGCAAAGGTTGTGGTTATGTGGATGCAAAAAAAAAG
CCAAGAAAAAGAAGAAACAGAGGGGCGAATCAGAACAACCAAGGAAACAA
CGGTGGTACTCAACCTCAAGGAGAAAATGCTGGTGGTGGACAACAACAAC
AGGGCGGTAGTCAACAAGAGAGAGGAGGTCAGCGGCAACCAGGAGGGAAC
AGTCATACCCAACGACGAAGAAGACAAAGACAGCGACAACATGAACGCCA
AAACAATCAACAAGAATAAATGAGAGTGAGAACAGAACTTCGATTTGAGG
AGATTAAAGAAAACACAAACGAAAAAGAGCGTGCACGAAAAATCGACGAC
CAGGAGAAATGGAGCACGTTTTTCAACAAAATTGTGAAATCATATTTTAG
TGATCGTGCATTTGAGAGATTTCATCATGAATTTGAACCAGCTCAACATC
GGTTGGACTGTAGAGTACCTTCTCCAGGGGAATTCAAATGCCAGCAGTTT
TCAAACCCTGGTTCAAAGAAATCAAAACGAAAATTGTTGATTAAAGATCC
AGTCAATGAAGAAGTAAAAGAGTCCAATGATGGTAAAAAGAAGAAATTTG
TCAAGAACGGCTGTGGTAAACCATGGAATTCCAATCTATGTCTCACTAAA
TTTAACTGCTTGATTGAGGACGACAAGGAAGGTATCGTCTTGGTAGTGCA
CCTACGTGAATATGGTCAACGATGTGGACACTGTCAAAACCGATATGAAA
ACCCAAGTTTTGAAGATTATGTTCTAGACATCATGATGTATTGGCTACTA
AGCATGATACTTGAAGGTATTTTCGACGTTGTTGATCCGTCAATTGCCGT
TAATCCTCAAGACATGGGTTATTACCATCGAAGACGTTTTTCTAGGAAAG
TTGACAAGGACGGAGAAGTGGTTGTTCAGCGCAGGAGGGGTCCACCTCAC
AATAGAGCAATGTGCCAAGCCTGTGCAGACAGCAAAGGTTGTGGTTATGT
GGATGCAAAAAAAAAGCCAAGAAAAAGAAGAAACAGAGGGGCGAATCAGA
ACAACCAAGGAAACAACGGTGGTACTCAACCTCAAGGAGAAAATGCTGGT
GGTGGACAACAACAACAGGGCGGTAGTCAACAAGAGAGAGGAGGTCAGCG
GCAACCAGGAGGGAACAGTCATACCCAACGACGAAGAAGACAAAGACAGC
GACAACATGAACGCCAAAACAATCAACAAGAATAAATGAGAGTGAGAACA
GAACTTCGATTTGAGGAGATTAAAGAAAACACAAACGAAAAAGAGCGTGC
ACGAAAAATCGACGACCAGGAGAAATGGAGCACGTTTTTCAACAAAATTG
TGAAATCATATTTTAGTGATCGTGCATTTGAGAGATTTCATCATGAATTT
GAACCAGCTCAACATCGGTTGGACTGTAGAGTACCTTCTCCAGGGGAATT
CAAATGCCAGCAGTTTTCAAACCCTGGTTCAAAGAAATCAAAACGAAAAT
TGTTGATTAAAGATCCAGTCAATGAAGAAGTAAAAGAGTCCAATGATGGT
AAAAAGAAGAAATTTGTCAAGAACGGCTGTGGTAAACCATGGAATTCCAA
TCTATGTCTCACTAAATTTAACTGCTTGATTGAGGACGACAAGGAAGGTA
TCGTCTTGGTAGTGCACCTACGTGAATATGGTCAACGATGTGGACACTGT
CAAAACCGATATGAAAACCCAAGTTTTGAAGATTATGTTCTAGACATCAT
GATGTATTGGCTACTAAGCATGATACTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035599XLOC_035599Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056516-proteinTCONS_00056516-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056516-exon-scaffold_276-1575043694:682811..683403TCONS_00056516-exon-scaffold_276-1575043694:682811..683403Clytia hemisphaericaexon
TCONS_00056516-exon-scaffold_276-1575043694:680552..681225TCONS_00056516-exon-scaffold_276-1575043694:680552..681225Clytia hemisphaericaexon
TCONS_00056516-exon-scaffold_276-1510915933:682811..683403TCONS_00056516-exon-scaffold_276-1510915933:682811..683403Clytia hemisphaericaexon
TCONS_00056516-exon-scaffold_276-1510915933:680552..681225TCONS_00056516-exon-scaffold_276-1510915933:680552..681225Clytia hemisphaericaexon
TCONS_00056516-exon-scaffold_276-1491911889:682811..683403TCONS_00056516-exon-scaffold_276-1491911889:682811..683403Clytia hemisphaericaexon
TCONS_00056516-exon-scaffold_276-1491911889:680552..681225TCONS_00056516-exon-scaffold_276-1491911889:680552..681225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:680552..683403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0326998	0.0379676	0	1.98972	0.964823	1.68136	1.45299	1.66719	2.17009	1.12112	0.91564	0.713652	0.48637	9.21587	3.80072	5.48771	4.41205	5.59645	4.47614	6.12765	6.73678	6.9591	8.07458	19.5855	14.7163	19.3117	28.8539	6.99714	7.12898
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027377Znf-3CxxC
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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