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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056510 ID=TCONS_00056510|Name=TCONS_00056510|organism=Clytia hemisphaerica|type=transcript|length=518bp
TTTGTGACCCTGGCTCGAAGATATTATACAATATTACATCCTCCAGTTTT
CGGCAAAATTAGCTTTACAATTTTGCCTCATCTTTTATCCGCAATTATTT
TCACAACTTTCATTTCACCTAGCTCAGGACTCGGCACAGTTGAGTTGGGA
AAAGGACTTCAGAGATGAAAGCAATTTGTTCAGTGACACACATACGGAAG
CGAAGACTTTTGTTTTGGAAAACGAACTTGAAGCATGTCAAATTCTATTA
GAAGAGGAACCAGATAACAAATGGACAATGTTAACGATAGTGTATTTGAT
GAAAGCCTTGGATGGTATCAAACACGCTGAAGCCATTGCTGGAATGATTG
ACAAGTTGATGGAAACTGATCCAATGAGAAAAGGCTATTACCAACACCTG
CGAAGTAAATTCAACCTGGAAAACAAACTACAACACATTTATAACGAAAA
GGTAAACttctcgtccccgtgtatcccaggctttatttacgttacggatg
gacgccagagaatattat Run BLAST on NCBI transcript from alignment at scaffold_276:485863..490022- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056510 ID=TCONS_00056510|Name=TCONS_00056510|organism=Clytia hemisphaerica|type=transcript|length=4160bp|location=Sequence derived from alignment at scaffold_276:485863..490022- (Clytia hemisphaerica)
TTTGTGACCCTGGCTCGAAGATATTATACAATATTACATCCTCCAGTTTT
CGGCAAAATTAGCTTTACAATTTTGCCTCATCTTTTATCCGCAATTATTT
TCACAACTTTCATTTCACCTAGCTCAGGACTCGGCACAGTTGAGTTGGGA
AAAGGACTTCAGAGATGAAAGCAATTTGTTCAGGTTAGTTTTAATTTTTA
CACATTTTGAAAAGTCTTTTTGGTTCCCACAATGACAACTCGTTTGTTAT
GTGTCGCTTTGAAGTGGAGTTTTTGGTAACCAGCCAGTACCGGTCATTTC
AATGTCACCAGTTACATTTCTATAGTGGCGCGTGTCAGCACATAATAATT
TAACGATACTTCAAATTATGATAGAGCTATGAAATTTTAGAAATGTGTTG
AGCTTAGATTCTCCGCAAAAAAGTTTCGATGACTTAAAAGATGACTTTTT
GTTGTTACGACAGTCAATGACGTCATTTTATTTGTTGCCATTTTAACTAC
AGAAGTGTTTCTCTCTCTCAAAGAAGTAATTCTACATTCCATTAAAACTG
TCTGTGCAAAATTTACTGTGCCAAACTATCGAAAGTATCGTTATGCTAAT
CCGCCCTACTTATTAACTCCTGCCGTAAGCTCGTCTAATGTCGACATCGC
TCTTCTAATTCCGACACCCAGTTTTAGAGATAGGAATAATAGTAAGGTCA
AAATCACTGATAGACAAAAGATTTTTTCCTCAATGGTCGCTAAGCAAAGA
AATATAGTTTCCATCAGCGTTTCTGACCTTCCTACTATTCCTATCTCTAA
AGAAGGGTGTCTGGATTAGAAGAGGGATGTCGACATTAGACCAAGTTAAA
AGTACTTATTTGACTTTTTCATTTTTATGAAATGTAATGGGGATTCGACC
AACCCATCAAGCTTGATCTTCCCCCATTTTACTGGGTAGATCCATGATAA
AGAAAGAGTAAATCTACAACCGTTGATAATGTGTATTTTTGCTTTCAGTG
ACACACATACGGAAGCGAAGACTTTTGTTTTGGAAAACGAACTTGAAGCA
TGTCAAATTCTATTAGAAGAGGAACCAGATAACAAATGTAAGAAACAATT
TTTTTCCTTCGGTAACAATTGTCANGTTAGAAGAGGAACCCGATAATAAA
TGTAAGAAACAATTTTTTTCCTTCGGTAACAATTTGTCACTCTTTACCGC
AATTGCCATTGGGGAATCATATAGCCTAGCGTGCACAATAACCATGGACT
TTAATATATCCTGGCCACTGTTTCTCGAATATATTTTTTTCTCGGGTATA
GCTTCAATGTTTATAAAGGTCAGTGTCAATAACTGCTTGTTATACAAATC
TTTTGAGCAGCATACAACCTTTATTAGAACACCAGTAGTAGTTTTGATTG
AGATATTGTTGTGAAATGACTTATGGAGGGTTAATATTCTATTTTTCTCT
GCGTAAGGGAGAGATGGGTATCAAATATTTGGGAAGCTTTTGAGTACGTA
CATATGAATGATCCCCAATCACATCTACCGTAAGTTGGTCTAATGTCGAC
ATACGTCAGCTAATTCTGACACCCTTCTTTAGAGATAGGAATATTAGGAA
GATCGGCATTGCTGATTGAAATTATATTCTTTTCTTGGTCAGAGAAGAAG
AAACCTTTTGCTGACCTTCTTATTATTGCTATCTCTAAAAAGACGTTTGT
CGAAATTAGATGAGGGATGTCGACATTAGACTAACTTACGGCATCATTGC
CTTGTTTTGGTTACTAGGGACAATGTTAACGATAGTGTATTTGATGAAAG
CCTTGGATGGTATCAAACACGCTGAAGCCATTGCTGGAATGATTGACAAG
TTGATGGAAACTGATCCAATGAGAAAAGGCTATTACCAACACCTGCGTGA
GTTCTGCTGTTGTTTGATATACAGTGAACTCTCGCTAATTCGAGATCGAA
CGAGTCTACTTTGTTCGAATTAGAGAAAGATTCGATTAATAGAAAAAAAA
ATGACGAGGGTTTTCCCTTGACGTGAAATGAGAATGAGTTCGAATTATAG
AAAGATTCCTATAATAGAAGTTCGAATTAGAGAAAGATTCCTTTAATAGA
AGTTCGAATTAGAGAAAGATTCCTATAATAGAAGTTCGAATTAGAGAAAG
ATTCCTTTAATAGAAGTTCGAATTAGAGAAAGATTCGATTAATAGAAAAA
AAAATGATGAGGGTTTTCCCTTGACGTGAAATGAGAATGAGTTCGAATTA
TAGAAAGATTCCTATAATAGAAGTTCGAATTAGAGAAAGATTCCTTTAAT
AGAAGTTCGAATTAGAGAAAGATTCGATTAATAGAAAAAAAAATGATGAG
GGTTTTCCCTTGACGTGAAATGAGAATGAGTTCGAATTATAGAAAGATTC
CTATAATAGAAGTTCGAATTATAGAAAGATTCCTTTAATAGAAGTTCGAA
TTAGAGAAAGATTCGATTAATAGAAAAAAAAAATGATGAGGGTTTTCCCT
TGACGTGAAATGAGAATGAGTTCGAATTATAGAAAGATTCCTATAATAGA
AGTTCGAATTAGGGAAAGATTCGATTAATAGAAAAAAAAATGATGAGGGT
TTTCCCTTGACGTGAAATGAGAATGAGTTCGAATTATAGAAAGATTCCTA
TAATAGAAGTTCGAATTAGAGAAAGATTCGATTAATAGAAAAAAAAAATG
ATGAGGGTTTTCCCTTGACGTGAAATGAGAATGAGTTCGAATTATAGAAA
GATTCCTATAATAGAAGTTCGAATTAGGGAAAGATTCGATTAATAGAAAA
AAAAATGATGAGGGTTTTCCCTTGACGTGAAATGAGAATGAGTTCGAATT
ATAGAAAGATTCCTATAATAGAAGTTCGAATTAGGGAAAGATTCGATTAA
TAGAAAAAAAAATGATGAGGGTTTTCCCTTGACGTGAAATGAGAATGAGT
TCGAATTATAGAAAGATTCCTATAATAGAAGTTCGAATTATAGAAAGATT
CCTTTAATAGAAGTTCGAATTAGAGAAAGATTTGATTAATAGAAAAAAAA
ATGATGAGGGTTTTCCCTTGACGTGAAATGAGAATGAGTTCGAATTATAG
AAAGATTCCTATAATAGAAGTTCGAATTTAGCGAGAGTCAACTTTATACG
TTAGAAAAGGGCATTGCGCTCGGTGATAAATTTACAGTAGAGTTTCTTTA
ATACACAAGTTGCAAAATTAAAGACTGAAGTCAAATCGCGCTTTTACTCG
AAATTTTTATGTGTCTGTTACATGACATTTATTTCTGATTGGTTCGACTT
TATTGACACTAATTAATTAAGTTATCAGCTGTAAGCTGTAAAACAACATG
GGAATGAAGTCACGTGAACTTTTCGAGTAATCACATGTTTTGACTGCACT
GCTATAACTTTGCAACCCGTGTATTCTCTTTTTAATGTCTCCCCAACTCG
AACTAGTTTTCTTGTTCCTTTTGTTGTTTTCTAAATTTCCTTAATTCGAA
CAAAATTGTGTGCGTGTTCGAGTTATGGTAATAGTTTGAGTCAGCTGTAA
TAATGGGATTCACGCTTAGGATTGTTTGTGACATTTTTCACGAAAAGCAA
CCGCATATTTTTAGTTCGAAAAGAGCTGAGAATTTTTGAAAGAGAGCCTG
TGAATAAGAGCTTGTCAAAATTTGTTATTGCTTATTATTTTTAAGACTGA
TCTGTTACAGGCAGAACTGCAAACTCCCAAAATGAGCTGGGAACCTATTA
ATTGACCGAAAAATCGAAGTTGTGGAGTTTAGACACGCAAATGTCATGAA
AACAAACATCTATAAAACGAGCATAGCATATCTTAAAGTGACTTAAAGTC
CATTCACTTTAAGTGTGCACTCTGCTTTGCTGTGGAAACCAAAAGTAGCA
AAATAAGAGTGCACACTTAAAAGGAGTGAACTTCGAATTTGAATTTCGTT
ATCCACCGCAAAAAATAGCTGCCATATATGTTAGGTTTGATGAAGATTCA
AAGAAAAACTATTTAGGGGTTAATTTTTTCCCTTACTCTTTAGGAAGTAA
ATTCAACCTGGAAAACAAACTACAACACATTTATAACGAAAAGGTAAACT
TCTCGTCCCCGTGTATCCCAGGCTTTATTTACGTTACGGATGGACGCCAG
AGAATATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056510-exon-scaffold_276-1575043694:489840..490022 | TCONS_00056510-exon-scaffold_276-1575043694:489840..490022 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1575043694:488936..489024 | TCONS_00056510-exon-scaffold_276-1575043694:488936..489024 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1575043694:488127..488255 | TCONS_00056510-exon-scaffold_276-1575043694:488127..488255 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1575043694:485863..485979 | TCONS_00056510-exon-scaffold_276-1575043694:485863..485979 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1510915933:489840..490022 | TCONS_00056510-exon-scaffold_276-1510915933:489840..490022 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1510915933:488936..489024 | TCONS_00056510-exon-scaffold_276-1510915933:488936..489024 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1510915933:488127..488255 | TCONS_00056510-exon-scaffold_276-1510915933:488127..488255 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1510915933:485863..485979 | TCONS_00056510-exon-scaffold_276-1510915933:485863..485979 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1491911889:489840..490022 | TCONS_00056510-exon-scaffold_276-1491911889:489840..490022 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1491911889:488936..489024 | TCONS_00056510-exon-scaffold_276-1491911889:488936..489024 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1491911889:488127..488255 | TCONS_00056510-exon-scaffold_276-1491911889:488127..488255 | Clytia hemisphaerica | exon |
| TCONS_00056510-exon-scaffold_276-1491911889:485863..485979 | TCONS_00056510-exon-scaffold_276-1491911889:485863..485979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_276 | supercontig | scaffold_276:485863..490022 - |
Blast
BLAST of TCONS_00056510 vs. Swiss-Prot (Human)
Match: PGTA (Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens GN=RABGGTA PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.402e-16 Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 2
Query: 137 QLSWEKDFRDESNLFSDTHTEAKTFVLENELEACQILLEEEPDNKWTMLTIVYLMKALDGIKHAEAIAGMIDKLMETDPMRKGYYQHLRSKFNLENKL 430
Q W +D + LF + K+ VL++ELE+C+ L E EP+NKW +LTI+ LM+ALD + + + L DPMR Y LRSKF LEN +
Sbjct: 338 QEGWCRDSTTDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFQTLKAVDPMRATYLDDLRSKFLLENSV 435
The following BLAST results are available for this feature:
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