TCONS_00056508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056508
Unique NameTCONS_00056508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056508 ID=TCONS_00056508|Name=TCONS_00056508|organism=Clytia hemisphaerica|type=transcript|length=275bp
AATTGAATCCAGCCAATGAGATGAAGAGACGGTTTGGGGCGTCAGTCGTT
GATCAAGATCGAAGGCGTAACCCACACGAACGAAGATTCAAACGCCTCAC
GAGACTTGTTGTACCCAAGGATAACTGGCCACCCTACTCTAAACAAGGTA
TTACAATGTGTGAGGATCGAAGTGATGAGACGATGAGTtctttgtttaca
ttcgaaCATCAAGAAACGTACCAGAAAATCCAATTCAAGTTTTATGATGC
TGTTGAATCCATGGACCATAATAAT
Run BLAST on NCBI

transcript from alignment at scaffold_276:473264..475521-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056508 ID=TCONS_00056508|Name=TCONS_00056508|organism=Clytia hemisphaerica|type=transcript|length=2258bp|location=Sequence derived from alignment at scaffold_276:473264..475521- (Clytia hemisphaerica)
AAATTAACAAATTGACAGTATGTAGATGCTTAAGGACATAAGCACATTTT
GGTAAATCGGGTACAGTATTGAATTTTGTCCAAGCTACTCGTTTTATACT
GTTAGAATGGACTTAAAAATTATCCCCTCCCGTATCCTTATGAAAAGATC
AATTTTGTATGGTGGTCTGATTTTACCGATCTTTCTTTTACGAAATATGA
CTGACATCATGGATTTTACTGGATGGAAATTATATGGTCTATTCGAAATG
GGTAGGGGTGAATTCTGTTTAATTAATAGTCCAAAGTTTTCTTGGTCAAG
AAGGTAAAAAAAGCTCTGTTCATTTTCTTTAGGTGTTTCACTATTTTAAA
GAAAATGAACAGATTTGTTTATTTCGTTCAATTTCTCCTTCTCTAGGAAC
TTGAATCCAGCCAATGAGATGAAGAGACGGTTTGGGGCGTCAGTCGTTGA
TCAAGATCGAAGGTCGGTATGAAAATTCGATTCCTCCGTCAAGTTGTTAG
CAAGTTTTTATATGTTCAGACTCTCGAACACAAATTATACCAAAATACTC
ACAAACGAAGACTTTTACGCTTAAAAGCATAAAAGGTCAAGGTCATATCC
ACAGGCTTCAAAACTTTCTGGCATTCTTCTTATNACGCTTAAAAGCATAA
AAGGTCAAAGTCATATTCACAGGCTTCAAAACTTTCTGGCATTCTTCTTA
TAAGAAAAGGTGTTCGTCTTTTCCATTACGCTCTGACAAAATTAAAAATA
GTTAATTGTTTCATTTTAGGCGTAACCCACACGAACGAAGATTCAAACGC
CTCACGAGGTAGGTCAAACCCTTTTTATTGGGCGGCGTTTATTTGAGGGA
CGCACTTTTTATTAGGTGTGGCGTCCTTTAGGGGGCAATGCTCATGGGGG
TGTGGCGCTTAATAGAGGAAACGCGGTACGGTGCCATGATGACATCAATG
TGGTACAAGAGTGGGGAAGTGTGAAAAGCACCATTATGCGGTTTACCTGT
ATACCTGTATACCTGTAGTGCTGAGTGTTGAGCAAAATGTTCATCCGTTC
TGTTCAACAACTGTTGCCGATGCGACACATCTTGGTTTTGTCGCGAGCAA
TGAGTTAAAAGATGGCTTGAAGCTCTTTATGATTTTCTTATACAAGGGTA
GGCAACTTCTTTGGGATAGGGCTCATTCTGTATGTTTCGGAGAGATACCA
CTTATCTCTTCGTTCCACAAATATCATATACCTTTACACAATAGATAGGC
TAGAACTACGCATAGATTTCCCTTGGAAGTGTGTCCAGTTTTGAAGTCCT
TTATTCCGCCATGTTATTTTCTAATCAATCTTTTTGAACGTTACATAATT
TTGAACATACGAATAACGCTATTGACGGCCAGAATTGAAAACAAGATGGC
GGACTAAACTGACCACACTTCCTTTTATATTGGAAACTCGATCCATGCAA
GTAGTAACAGGGCTTACCTCTCATATTAAAAAGGATTTCATCGTTTTTAT
CTCATACTCAAAGCAAGACGAAAACTACTTTGGAATTCTTAATTTGCAGA
AACAAGACGCAAACTTTGTTTAAAAAATACTTTGGACTTGTTACTTTGTA
GACTTGTTGTACCCAAGGATAACTGGCCACCCTACTCTAAACAAGGTATT
ATGTTTTCCTTACTACCTAATTAGTTCCTGATTCTCAAGAGCTTTTGGTT
ACTTGATTTCTTTCTCAGACAGAGCCATCATATTTTCCTTGCTACAGTCG
AGTCGAACAAGCACAGGGGACACAAATTTGTTTGAGCTAAAGACATTTTG
AGATGTGCTGTAAGGTTTTTAAGACATCGTGAACTGAAGGCAAAGGAGCA
AAAACTTGTTCGAGTTTAGGAGACATTCGAATTATAGAAGTTCGAGTTAT
AGAAGTTCGAGTTGAAGAGACTCCACTGTATTCATCCCATATCTGGGTGA
AAAAAATTAAAACGGTCCACCAACCTTGGCATATTCTCTCACGGAGCCAT
GGCCTTTAAAGGGAATACGTGCCATGCGCAGAGTAATCAAAATCTGCTCC
TCCTTCATTTTATTTTTACCGGGTCACTGAGTGTGACCACCTGGACAGCC
CATCTTTTACTCTACATTGCTTTCCACTAGGTATTACAATGTGTGAGGAT
CGAAGTGATGAGACGATGAGTTCTTTGTTTACATTCGAACATCAAGAAAC
GTACCAGAAAATCCAATTCAAGTTTTATGATGCTGTTGAATCCATGGACC
ATAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035594XLOC_035594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056508-exon-scaffold_276-1575043694:475520..475521TCONS_00056508-exon-scaffold_276-1575043694:475520..475521Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1575043694:475060..475121TCONS_00056508-exon-scaffold_276-1575043694:475060..475121Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1575043694:474714..474752TCONS_00056508-exon-scaffold_276-1575043694:474714..474752Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1575043694:473877..473920TCONS_00056508-exon-scaffold_276-1575043694:473877..473920Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1575043694:473264..473391TCONS_00056508-exon-scaffold_276-1575043694:473264..473391Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1510915933:475520..475521TCONS_00056508-exon-scaffold_276-1510915933:475520..475521Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1510915933:475060..475121TCONS_00056508-exon-scaffold_276-1510915933:475060..475121Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1510915933:474714..474752TCONS_00056508-exon-scaffold_276-1510915933:474714..474752Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1510915933:473877..473920TCONS_00056508-exon-scaffold_276-1510915933:473877..473920Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1510915933:473264..473391TCONS_00056508-exon-scaffold_276-1510915933:473264..473391Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1491911889:475520..475521TCONS_00056508-exon-scaffold_276-1491911889:475520..475521Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1491911889:475060..475121TCONS_00056508-exon-scaffold_276-1491911889:475060..475121Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1491911889:474714..474752TCONS_00056508-exon-scaffold_276-1491911889:474714..474752Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1491911889:473877..473920TCONS_00056508-exon-scaffold_276-1491911889:473877..473920Clytia hemisphaericaexon
TCONS_00056508-exon-scaffold_276-1491911889:473264..473391TCONS_00056508-exon-scaffold_276-1491911889:473264..473391Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:473264..475521 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.1803	34.3511	24.602	36.3401	4.54561	6.40925	26.417	26.4399	8.56045	13.2522	7.19102	4.33194	9.27518	11.8396	10.7602	13.4649	28.5793	18.9302	15.6607	8.56585	9.82396	16.5616	9.69103	10.9296	16.4393	19.1211	15.3544	6.22572	9.54052	13.4743
Blast
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BLAST of TCONS_00056508 vs. Swiss-Prot (Human)
Match: TCF25 (Transcription factor 25 OS=Homo sapiens GN=TCF25 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.870e-17
Identity = 41/91 (45.05%), Postives = 54/91 (59.34%), Query Frame = 3 
Query:    3 LNPANEMKRRFGASVVDQDRRRNPHERRFKRLTRLVVPKDNWPPYSKQGITMCEDRSDETMSSLFTFEHQETYQKIQFKFYDAVESMDHNN 275
            LNP  E+KR FGA  +  ++R    +R + + T L  PK  WP YSK G++M    S + + S F FEH E YQ+ Q KF  AVESM+ NN
Sbjct:  185 LNPDTELKRYFGARAILGEQRPRQRQRVYPKCTWLTTPKSTWPRYSKPGLSMRLLESKKGL-SFFAFEHSEEYQQAQHKFLVAVESMEPNN 274
The following BLAST results are available for this feature:
BLAST of TCONS_00056508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TCF251.870e-1745.05Transcription factor 25 OS=Homo sapiens GN=TCF25 P... [more]
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