TCONS_00056446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056446
Unique NameTCONS_00056446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056446 ID=TCONS_00056446|Name=TCONS_00056446|organism=Clytia hemisphaerica|type=transcript|length=2493bp
ACTGTCTttgatttaaagaaatttatcgCCTCTCAACTGAAAAATTCGCA
ATTAGGGTTTTAAATTCTAATCAAACCCTTGAAGACCTCAAAGATCTCAC
ACCCCTAACTACAAAGAAATTAACTTTTAGACCTGTCAATATTGACTTGG
TGTAAGTGAATGTGCACTGTAAAATACAAATGGTCTACCCCCATAATATA
CCCTAAAAGCCTATAGGATACACACATAACCTAGCAGCCAAACCATTTAC
CAATGCTTCAATCTNTCTCAACTGAAAAATTCGCAATTAGGGTTTTAAAT
TCTAATCAAACCCTTGAAGACCTCAAAGACCTCACACCCCTAACTACAAA
GAAATTAACTTTTAGACCTGTCAATATTGACTTGGTGTAAGTGAATGTGC
ACTGTAAAATACAAATGGTCTACCCCCATAATATACCCTAAAAGCCTATA
GGATACACACATAACCTAGCAGCCAAACCATTTACCAATGCTTCAATCTG
GCTTTATAATCTAAACTAGCTTTATTCTTGTTTAGGTACCAGACTTTTTA
TTAAATGTAGGTTTGATTGAAGTGCAGAAGAGCCTTTGTTATTCTACACG
CAACCGGAAAGGAGTGTAAAAATGCTAAGAGGAGTAGATCAAGATCTAGA
GATAGAAAAAgAAAAAGCCGCTCAAGGTCAAGAGACAGGCGGAGAAGTCG
CAGAAGCCGTTCAAAATCAAGAGATCGAAGgaGAAGTAAATCACGTTCAA
AATCACGTGAAAGGCGTAGAAGAAGTAGAAGTCGATCACGTGACAGAAGG
AGAAGTCGAAGAAGTAGAAGCAGAACAAGGTCCCCAAGGCGCTCACCATT
GAGAAGGAGATCCCCAGATAGAGAATTTGTCCGACGAAGCTCCGATGGTG
TAACAACAATTTCTTTGCGAGGAGATCGTGACCGTGAAGATGACCACATC
ACGCAAGAAGAACGTGATGCACGTACTGTCTTCATCATGCAGTTGGCACG
GAATCTAACCATCCGCGATATCCAAGATTTCTTCAGTAAAGTTGGTCAAG
TTCGTGACGTCAGACTCATTTCAGATCGAAACTCTAGACGCTCCAAAGGA
ATTGGTTATGTGGAATTTACAGACCCTAGCGCTGTCACTTTGGCTATCAA
ATTGTCAGGGCAGCGTTTGCTAGGTGTTCCCATAATGGTATCTCCAACAA
TGGCTGAAAAGAACCGTTTCGCGGCACAACAAGCTGCGGTCACCAAACCA
TCTGGTCCCATGAAGTTATACGTCGGTTCTTTGCATTACAATATAACAGA
GCCTATGCTTAAAGCGATATTCGAACCGTTCGGGACCATCGACAGTGTTC
AGTTACAATACGACAGCGAAACGAACAAATCGAAAGGTTACGGTTTCGTC
AATTTCCAAGATTCCGTGGCCGCCAAACGTGCCATGGAACAGATGAACGG
ATTTGAACTAGTTGGCCGACCAATCAAAGTGAACACAGTATCAGAGCGGT
CTGATGGCTCCATGTCTTTCCTTGATGATGAAGAGACAGAGAAAGGTGGT
ATTGAAATGAACGCACAGTCCAGAGCCTCGTTGATGCAAAAGCTGGCACA
AACACATGGTTCAGGAATGCAAGTACCACAAGTTCAACAAGTTTCAGGAA
TGTTGTCTTCACCTTTGTTACCTCTTGGTGGAAGCACGTGTTTAATTCTA
TCAAACCTCTTCGACCCTACAAAAGAAACCGATCAAGATTGGGAAATGGA
TTACAGAAACGACGTCTTGGAAGAAGTAACAAAACATGGAATTGTAGTTC
ACATCTCTGTTGATACTATCAGCCCAGAGGGCAACATTTATTTGAAGTGT
TTAACGGCAGACGTGGCAAGTAAAATCGTCCAATCGTTTAACGGTCGTTT
CTTTGCTGGCCGCACCATTCGTGCGACGCCTGTACCCACTGCCAATTACC
ATACCATGTTTGCTGATTCCGTGAATGCTGTAAGACCTTTGAAACCTGAT
TCTTGAGCATTCAATAAGCCTTGATTGGTGATCTAAATGATGATTGTGTA
CAGTAATGAAATGACTTTTAATGAGGAAAAAAGACATCGAAATAAACTTA
GTTTAATAATGGGACACAAGAAATTATCCAACTGCCAACTGACTCTTTCA
TAAAGCTCAAAGACACGTGGTTATTTTGATATAATGAGtcaattttcttt
atcagtaggaaaaagaaaaaaagatactAGGCTCTGTACCACGTGACAGT
ACAGAATCGAAATGTTCATGTAAAACTGAATGCATGATTTATTGGGATCA
TGGActgattattttttctttatattgaAAAGTTCTGGTTTGATTATGAG
TCGCAATCTTTGTTATATTATTATCATTGTAAAATATGAAGTTTTTATGA
AATACCTATACTCTTTGACAGGCTACATTTGTTACTCTCCTTTTTCTTTT
AGTTATCTTTCTTGATTCAAATttaggctcttccagaaaatga
Run BLAST on NCBI

transcript from alignment at scaffold_276:669075..679583+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056446 ID=TCONS_00056446|Name=TCONS_00056446|organism=Clytia hemisphaerica|type=transcript|length=10509bp|location=Sequence derived from alignment at scaffold_276:669075..679583+ (Clytia hemisphaerica)
ACTGTCTttgatttaaagaaatttatcgCCTCTCAACTGAAAAATTCGCA
ATTAGGGTTTTAAATTCTAATCAAACCCTTGAAGACCTCAAAGATCTCAC
ACCCCTAACTACAAAGAAATTAACTTTTAGACCTGTCAATATTGACTTGG
TGTAAGTGAATGTGCACTGTAAAATACAAATGGTCTACCCCCATAATATA
CCCTAAAAGCCTATAGGATACACACATAACCTAGCAGCCAAACCATTTAC
CAATGCTTCAATCTNTCTCAACTGAAAAATTCGCAATTAGGGTTTTAAAT
TCTAATCAAACCCTTGAAGACCTCAAAGACCTCACACCCCTAACTACAAA
GAAATTAACTTTTAGACCTGTCAATATTGACTTGGTGTAAGTGAATGTGC
ACTGTAAAATACAAATGGTCTACCCCCATAATATACCCTAAAAGCCTATA
GGATACACACATAACCTAGCAGCCAAACCATTTACCAATGCTTCAATCTG
GCTTTATAATCTAAACTAGCTTTATTCTTGTTTAGGTACCAGACTTTTTA
TTAAATGTAGGTTTGATTGAAGTGCAGAAGAGCCTTTGTTATTCTACACG
CAACCGGAAAGGAGTGTAAAAATGCTAAGAGGTTTATAAAATTTACTTGC
TggtgaataaaaaacaaacagaaaaatttatttaactCTGGGTTTCAGTT
TGCAGTttacatttttaaatttgagtaatttcagTAATTTTGTCTGACAG
GCAAGACCAATTTGATTCCTAgtttaaagttttgaaaacttaGTCAGTTA
ATGGTTTTGCAACGTTCAAAGTGGAAAATAAGATCAAAGCTTAGGAGGCA
AACAAAAGTGAATATAATAGGAAATAGCATCCATCCATCTCTATTATTCA
CAATAGACAGTAAAATTGGTCTTgccttttcaaaaatcaaatattttgtg
cTTAAAATAACTTAAAAAGTGACTGCATTCTGAAACCCTTAGGCACAGAA
CAGGTTTTAGTCGTGAATTAACATTTCTATCACTTGTCTCTTTCAGGAGT
AGATCAAGATCTAGAGATAGAAAAAggtatttaaaaattttatccCATCA
AAAATATGTTTCTATTCATCAAAATAATGATGAGCTACAATCTACAATTT
CTgcatatttttttacaatttgtCAGATGTCATGTCAGATTATTACCACT
ATCCCTTTTTTTCTACATAATTATCcaggaatttttttgaaaataaatat
ttcttctTTCATACCCCTTCAAGAAAAAAAGGATGATTGTAAGGTAAAGC
ATGACACTTATAAACCCtttattttaaatattacaGAAAAAGCCGCTCAA
GGTCAAGAGACAGGCGGAGAAGGTAAATTAATATTTCATTCACTTTCTTT
TGGCATATGGCTACGCCTTTTTCAGTCCAACTAATTTCTGATTATGCcca
tatttcaaattttcataaccGATAGGACAATACTACAAGGATATTCAAAA
ACTATTAGTCTGGCAATGTTATGAATTTTGAGCATTTATTTCAGCTGTTG
TTAATCTTACTCAATCTCCACTCTTTTTTAGTCGCAGAAGCCGTTCAAAA
TCAAGAGATCGAAGGTAATAGAATCAAACATACAATTTGTTCACTTGGTC
TTCAAGAATTTATTGAATCCTTAGTATATTTACACATGATCCCCTCCAAA
TGCTACAAATCCATTTCCATTTATGTAGTATTTTAAATCTGCACTCTAGA
TTAACTAATGGCGGATAGATTAATTAGTTTTTTGTCTAAAAATAGGCGTT
TTAGcccctttttttcattttggtaagACCTAATTTTTGGTTGATTTCGG
CTTGACAAAAAGAGGGTCTTTAAAAGATGTTAAGCACGCGGTGCATCTTA
GTTAGTACTACCAATTATTAGGAAGGTATTATgattctttttcttatttt
tttcaggaGAAGTAAATCACGTTCAAAATCACGTGAAAGGCGTAGAAGAA
GTAGAAGTCGATCACGTGACAGAAGGTAGTCTAAATATGATTTTCAAATG
TTCTTCAAAGTCAGCGGGCTCTGGCATATCCCTTTTGTATTTTGTGAAGC
CTTATTCAGAGTCCACTCAAAGATGGTGAATCCCTGATGATTGTTAGCAA
GAAACTTGAAGTGCTACATTTAAGAAAGTAGCGATAAAGGTGGGTTTGTT
TCACCAAAGACAGTGCTCTACGTAAAGGAGCAATACAATAATGATgagtc
aaaactttttttaaaatgtagaacttaaagtattaaaattttattttttc
taattacTCATTAATTTTACGACTTGTCGATTCTAGCaatgtttgaattt
tgaattttttcaattagATCAAACTTGTATCAtatgtagctgatgattgt
aagcatgaaactttaagttTTGACTCATCATTATTACATTTAAGATAgaa
agttttgacatattttatattatatacaCTCTATGAAGTGCACTGTCTTT
GATGATACAAACCCACCTCTATTCATACTGAACCCCTCTGTAAAACTTGT
AACTATTACGTAACAGCTAATACGTTGTCATTAGAACTGAGGTCTGACTT
ATGCATTTTTGGTTCTAGTGAATTAGAAAGTCTTTTCGATCTTTTTCAGG
AGAAGTCGAAGAAGTAGAAGCAGAACAAGGTCCCCAAGGCGCTCACCATT
GAGAAGGAGATCCCCAGATAGAGAATTGTAAGTCAAGTCCGTGTCTGGCT
TGTGCTTTAATGTGCCAATAATCAGTTAACAACTTGTGTTTATTCCTGTA
ATGTCTCCCACCTCACCATCCCTCCTCactgatctttttttttcaacctt
taACTTCGATTTCTTAGTGTTGTGAAACCTTAACTGATTATATCGATACC
CTAAACCGAACTGAAAAGAACGAAACAATATTGGGAGACATTATAGGAAT
TAGTTATTCTAATTCACTAGAACAAAAAATAGATCAGTCAGACCTCAGTT
CTAATGACAAcgtattggaactaattttcgtgagaattaattttagcgtt
tttcgcggtttttcgtcaaagtCGCGAACATTTGAACCCGCAAAAAAATT
TGAGAGTTAAAAACAACGAAAATTGATTCCTGCGagatacaattttttcc
aattttattaaaaaatttcaaaaatccctaggaaatttgtccaaaaaagg
gcaaaaccgcgaaaattaaaactcgtgaaatgcaatttttcggatatttt
ttttcgaccatgaaaattagttccaataaggtatctCCTACCATTTCCTT
ACGAGGAATTTTTGAACCTACTCCCCCGCAATGTACCAGAACATTATTCT
GTTAATCCTGCATTGTCAACATAGAGGCGTGCCTTCATTCTATATCATGA
AAAATTGGtatctttttaaaagtttttattcGTCAACTTTTCTTGACTGT
CTGCGGTTGTTGGGAATGTACCCTCgtccgggtcaacccatgccatgtga
ggggataTGCCTGGCTTTGTGGTGAGTCGTTCGAGTATAATTACTATACA
CCAGCAGCTCGATGTGTCCCGAGCACGAGTTGGCAGGGTCAGGAAAGCAC
AGTCCTATCCTAGGATAGTGAATGTTGTCCTGGATAGGGCCTGTTCCGTC
TATCGGAAGGTTAATCCATCTTTCTCGCTACAGTTGTCGAGCACAAGGTA
TTTTGCCCTTACCAATCGATGCTCTTCTAATGTATtactctttttggacc
tacctggaggtcctataaattaacctttgttcgtccgtccgtccgtccgt
ctgtccgtccgtccgtccgtctgttaccagcttttctcaagattggctca
ttagttttttctgatttttgtcacaaagatgcaaaatggcaatgcccaaa
atgtgacggagcccgattttcgaaaaaaaaaattttccggccaaaaatgc
cggaaatatgccggaaaaaccagttttttgacattttctcgagatttcat
cataagttttcaaaacatgacagagttcgattttttgagaaaattctttt
tccggccgaaatgccgaaaatgccggaaatatgttGGAAATCGctgattt
tgcagattttcattgggctttttcctaacatttctttgttttttctaaaa
aaaaacatcattgataGCAATTCCCACTATCATtcatgattcgattgtca
ataaaactgattttttttctcgaagaagaaaatgtcactgtagagcgcga
tggtttgagttttctagaaaccttatttattaagctgtatatttttctga
aagtggattgtttttataaagaaaagcgtttaatagttttttagcttttt
caatAGGGTTGATAATTTCTCCCAATAGACACGctttcattgtatatttt
ttattttgtccagttatgtcttatgtgtttcattgtttcaattttcattg
attagttttgataaccaggtaggtccataaaagtatcacttgtttcattT
CAAAGTGTCCGACGAAGCTCCGATGGTGTAACAACAATTTCTTTGCGAGG
AGAGTAAGTAGTAACGCTATGTTTTAAATTGCTTATTTGGGTTCTAGAAA
gaaatgtcttcttttttttattatttaattttctaaaagaaaacaaaaat
aactcCTTGAAGATTTTTACAAACAGCGTGATTCTGATCGATTACTTTCT
AACAACTTGCTAGTATGCTTGCTTATCAGTCTTcatacaaaaaaatcaag
aaaaaagaaaaaccaatCTATTCTGAAAGAAGCTTTCTGCCAGCCTTATT
AttgatgattattttttttcaatttatttcagTCGTGACCGTGAAGATGA
CCACATCACGCAAGAAGAACGTGATGCACGTACTGTCTTCATCATGCAGT
TGGCACGGAATCTAACCATCCGCGATATCCAAGATTTCTTCAGTAAAGTT
GGTCAAGTTCGTGACGTCAGACTCATTTCAGATCGAAACTCTAGACGCTC
CAAAGGAATTGGTTATGTGGAATTTACAGACCCTAGCGCTGTCACTTTGG
TAAGTCATGTATCTTTCTGAACCACAATCTGATATTCCAATCATGTTTTT
GTGATCGCttacaaagaaatattttaatggGTTGTTTTTCAAATTGGATG
TTATTGGTAGCTTGGAtgacgagatttacgtttgacTACGTCTCGAGAGA
TTCTTCTTCCAGCATCGGGCAAGGTTGAGAATGTTTTCTCCGCAATTTGT
ACTAAAACCTTCTGATTACCCATAAATTATCAAGAGCAATTCTCTTTAGT
TCAATCAAGGAGGAAAAGGTTAAATTCGAATACATCGAAATGTTAAACGC
TCGCCCTTGTGTCACATCTATTATTAACCTAATAATTCGAACCAACCCTA
TAATTTGACTAATCTAAAAAGTCTTCACATACTTATTTNTCTAGTATTAA
CCTAATAATTCGAACCAACCCTATAATTTGACTAATCTAAAAAGTCTTCG
CATACTTATTGAACCAAACATCTTTTCTTCATATTTCAGGCTATCAAATT
GTCAGGGCAGCGTTTGCTAGGTGTTCCCATAATGGTATCTCCAACAATGG
CTGAAAAGAACCGTTTCGCGGCACAACAAGCTGCGGTCACCAAACCATCT
GGTCCCATGAAGTTATACGTCGGTTCTTTGCATTACAATATAACAGAGCC
TATGCTTAAAGCGATATTCGAACCGTTCGGGACCATCGACAGTGTTCAGT
TACAATACGACAGCGAAACGAACAAATCGAAAGGTTACGGTTTCGTCAAT
TTCCAAGATTCCGTGGCCGCCAAACGTGCCATGGAACAGATGAACGGATT
TGAACTAGTTGGCCGACCAATCAAAGTGAACACAGTATCAGAGCGGTCTG
ATGGCTCCATGTCTTTCCTTGATGATGAAGAGACAGAGAAAGGTGGTATT
GAAATGAACGCACAGTCCAGAGCCTCGTTGATGCAAAAGCTGGCACAAAC
ACATGGTTCAGGTGAGTCAATATATCCTAGATAAACTCTAAAGCTTTTCA
TTTTATAAACTTGAGTTTTCCTTCCAATAATCATTCTTTATACCATGTGT
CTAGAAACAGAGCGGAATGGATTCTTATAAATCACAACTTAAATTCACAA
AAGCAACAGTCACGTAGTAGTGAAGTAGATATGATTCTCCACTCTTCGGT
TCCCATTCGGTGCTACGATTcagtgaatgtaccttcgcccTGGTCGACCC
CTACCATGCGAGGGGAATTTGGTAGAAGAGTGTGGGGAGGTATGTCAAAC
ATTGCAACTGGGGCGGTGACTTTGCTTGcattaattcatgatatgcaccg
ttGCATTGGTTGAAAATAACGTAttaactgattttacgtcacttacaacc
aatcagctagatgtaatgtcagaagatatTGCTCGCTCTACCATCTTGTC
AACCCCGCGCTCTTCATCATTCTTTAAGAAATCTTAAATGGGAAAAAGAC
ccggggggcactgggtttgccaactgacggtatgtgcggcgaaaaaattg
gcttttaaaatcgcacccttacagtgtagcaAAAAACGCCGAAATTCCGt
caaattcatacccttacaaattttcaatccttttagagcaaaaaaattaa
tttttccttgaattactataatttccacccttacagtgcatttaacAAAA
AGTCTACCCTTACAGCGCATTTCTGCTATCTTGAAAAATAGACCCTTagc
cgccgcacatacccgtcggtcaatttgcctggctgcccccccccccccNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgcccccccc
ccccccccagggaaAAAGACAATGGCAACAGACCCTTTtttgcaatgaat
tttgaaattagccgtagatatcgggtctgtgcACAGATAAAGGGTTAAAG
GGATAAGGCCTATACAGTTCGCATCGGCAGGATTTCATTTGAATTGAAAT
CCACAGAATgagtttgaaatgtttttcagGTGTTCCAAAGTAAGCGACTC
ggtgaaaatttatttgaaaacctttgtaatctttttggatttcttttATA
GGAATGCAAGTACCACAAGTTCAACAAGTTTCAGGAATGTTGTCTTCACC
TTTGTTACCTCTTGGTGGAAGCACGTGTTTAATTCTATCAAACCTCTTCG
ACCCTACAAAGTGAGAACCCTGTCTCCTGTTGTGTAGATTCTTTTTCCTG
ATTAGTGCATACTGTAATTTCGAAATAAAACATCTCGACGATGATCTatt
caaaaattgtcaattttcattCTTTGGAAAGAAGTTTCGTGCTGCTATGg
aaactactttaggcgtacaaactttcgcgagcagaaactttcgcgaggtc
gaaaaatcgcaaaatctacgacatttactttcgcaaatttgacaaaaaaa
attttcgcgagaaactttcgcgaatgaggTATATTTTTAGTAGAAAATTC
AAGTTTTCGGCGCATAAAACTAGTGTTTTGATCGTTCAAATGTATTCAAA
CAACAATTGATGGACTTTTGCTTAGTATCTTCACTAAATTTTATCCTTGT
TATCATCaaagaggaaaatttgagtgaatttccttttcagattttttttc
gcgagcataaactttctcAAATTACCctctcaagaattttcaagatattt
actttcgcgaaaagggctaaaattcgcgaaaatcgcgaaagtttctgctc
gcgaaagtttgttcGCCTAATGAAAACCGTTATTCCCGTTGCCAAAGATA
GCGAAGGACCTTTAGATTTGATATAATattagtgtgcaaaatttcaaaat
taaaataccATTTGCAATGTTTACATGTTGTTTATTTGAGCAAAACTTCT
TCACTAAAAGGGTcaattgaaagtgaaaaaaaatcagaaaaaatttgatc
TTCGAAAACTTACTTGCTGGTGAACTTCAACTAATTGTTTTCTTGTTCCA
TCTTTTTTCAGAGAAACCGATCAAGATTGGGAAATGGATTACAGAAACGA
CGTCTTGGAAGAAGTAACAAAACATGGAATTGTAGTTCACATCTCTGTTG
ATACTATCAGCCCAGAGGTATGAATTCATTTAGTTGTTTTAACCAACGTA
ATGGGCCAAAGCCTAACCTAGGACCTGACCACAAATGATAGTGATTGGAA
ATTTTAATGTATTCACGAGGGcagtcggaaccactacatggaaaaggcaa
ctattgccttagcgggaaatatttcccgaacaacgggaaggtggaaaact
tcccgaaatggTTAGACTTTCCAAATCGGGAAGTTCACCAGTTTTCTGAT
CGGGAAAGTGACCTCTGAGCACTCTGAAAATGCCTgtgaaaagtttaaaa
tttgtcCCTCTTGTGAAGGagggaaaataaataatattcaccaggtagtt
aagaaatccaccTGGTAACCGCTTCTTGattctactttccccattcccaa
ttaaaaacttccctaTTAGGAAACtttttctcgatcgggaaacaaaaatc
tgctttgtttacaaaaattctatttcccgttcggggacgatgaaaagttc
ttgaccaaaacgggaaacagaaaagtTATGAAATTctcaatctggaaaca
gtttcctGTTCGGGTTATTTTCACCCCACCGTTCGGGAAaaatttcccgt
taaggcaatagttgttTCATGTAGTGGTACCGACTGGAGGAGGCAGGATC
CACTGCTAAGGCATTTCAGTTTGTTGTGGGATCCTTTTTTGGTTTTGTCT
CTTACTTAAACACTGCAGCTTGGCAAGTTGTGTAAAGAAACAGCCAACCA
AGTAGACCTAGCACATAGTCAGTCGGAACCACTTCATAGAAATGgcattt
cccgaacgggaaggtgaaaataacccaaaaaggaaactgtttccagattg
aaaatttcatcacttttcagTTTCCGGTTttggtcaagaacttttcattg
ttcccgaacgggaagttgaatttttgtaaacaaagcagatttttgtttcc
cgatcgagaagaagtttccaaatagggaagtttttaattgggaatgggga
aagtagaatCAAGAAGCGATTACCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
ATTTACCTTCCACGACCATTTCCGGAGTGCGCAGAAGTCacattcccgat
cgggaaactggTTAACTTCCTGATTCGGAAACTCTAtccatttcgggaag
tttttcaccttcccgctcgggaaatatttcctgttaaggcaatagttgcc
atttctatgtagtACAGTTGTTGTAATTGAAGAGAAAGCACTCATACGAC
AGATTACAGAGCCTACGCCTGTCAGTGTATTAAACATTTGTTCAGTGAAC
CTGCTAGCTAGTACACAAGAATACTGagtgtaaaaaaaggaagaatatAT
CCATTGTTGGAAGTGGCTAAATCAACTTTCCTGCAAAGGTCGTTTTTGAC
AATAACCCGTTCTTTATCATTTCCTTTTTGAAACTTGATAATAATTGTAA
AAGTATTTCGTGAGAAAACCATTTTATTGCTGTTCTCTTTTTCAGGGCAA
CATTTATTTGAAGTGTTTAACGGCAGACGTGGCAAGTAAAATCGTCCAAT
CGTTTAACGGTCGTTTCTTTGCTGGCCGCACCATTCGTGCGACGCCTGTA
CCCACTGCCAATTACCATACCATGTTTGCTGATTCCGTGAATGCTGTAAG
ACCTTTGAAACCTGATTCTTGAGCATTCAATAAGCCTTGATTGGTGATCT
AAATGATGATTGTGTACAGTAATGAAATGACTTTTAATGAGGAAAAAAGA
CATCGAAATAAACTTAGTTTAATAATGGGACACAAGAAATTATCCAACTG
CCAACTGACTCTTTCATAAAGCTCAAAGACACGTGGTTATTTTGATATAA
TGAGtcaattttctttatcagtaggaaaaagaaaaaaagatactAGGCTC
TGTACCACGTGACAGTACAGAATCGAAATGTTCATGTAAAACTGAATGCA
TGATTTATTGGGATCATGGActgattattttttctttatattgaAAAGTT
CTGGTTTGATTATGAGTCGCAATCTTTGTTATATTATTATCATTGTAAAA
TATGAAGTTTTTATGAAATACCTATACTCTTTGACAGGCTACATTTGTTA
CTCTCCTTTTTCTTTTAGTTATCTTTCTTGATTCAAATttaggctcttcc
agaaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035571XLOC_035571Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056446-exon-scaffold_276-1491911889:669075..669705TCONS_00056446-exon-scaffold_276-1491911889:669075..669705Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:669075..669705TCONS_00056446-exon-scaffold_276-1510915933:669075..669705Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:669075..669705TCONS_00056446-exon-scaffold_276-1575043694:669075..669705Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:670121..670150TCONS_00056446-exon-scaffold_276-1491911889:670121..670150Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:670121..670150TCONS_00056446-exon-scaffold_276-1510915933:670121..670150Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:670121..670150TCONS_00056446-exon-scaffold_276-1575043694:670121..670150Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:670411..670446TCONS_00056446-exon-scaffold_276-1491911889:670411..670446Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:670411..670446TCONS_00056446-exon-scaffold_276-1510915933:670411..670446Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:670411..670446TCONS_00056446-exon-scaffold_276-1575043694:670411..670446Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:670656..670688TCONS_00056446-exon-scaffold_276-1491911889:670656..670688Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:670656..670688TCONS_00056446-exon-scaffold_276-1510915933:670656..670688Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:670656..670688TCONS_00056446-exon-scaffold_276-1575043694:670656..670688Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:671031..671099TCONS_00056446-exon-scaffold_276-1491911889:671031..671099Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:671031..671099TCONS_00056446-exon-scaffold_276-1510915933:671031..671099Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:671031..671099TCONS_00056446-exon-scaffold_276-1575043694:671031..671099Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:671724..671801TCONS_00056446-exon-scaffold_276-1491911889:671724..671801Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:671724..671801TCONS_00056446-exon-scaffold_276-1510915933:671724..671801Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:671724..671801TCONS_00056446-exon-scaffold_276-1575043694:671724..671801Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:673580..673627TCONS_00056446-exon-scaffold_276-1491911889:673580..673627Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:673580..673627TCONS_00056446-exon-scaffold_276-1510915933:673580..673627Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:673580..673627TCONS_00056446-exon-scaffold_276-1575043694:673580..673627Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:673907..674123TCONS_00056446-exon-scaffold_276-1491911889:673907..674123Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:673907..674123TCONS_00056446-exon-scaffold_276-1510915933:673907..674123Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:673907..674123TCONS_00056446-exon-scaffold_276-1575043694:673907..674123Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:674614..675085TCONS_00056446-exon-scaffold_276-1491911889:674614..675085Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:674614..675085TCONS_00056446-exon-scaffold_276-1510915933:674614..675085Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:674614..675085TCONS_00056446-exon-scaffold_276-1575043694:674614..675085Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:676276..676384TCONS_00056446-exon-scaffold_276-1491911889:676276..676384Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:676276..676384TCONS_00056446-exon-scaffold_276-1510915933:676276..676384Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:676276..676384TCONS_00056446-exon-scaffold_276-1575043694:676276..676384Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:677186..677291TCONS_00056446-exon-scaffold_276-1491911889:677186..677291Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:677186..677291TCONS_00056446-exon-scaffold_276-1510915933:677186..677291Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:677186..677291TCONS_00056446-exon-scaffold_276-1575043694:677186..677291Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1491911889:678920..679583TCONS_00056446-exon-scaffold_276-1491911889:678920..679583Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1510915933:678920..679583TCONS_00056446-exon-scaffold_276-1510915933:678920..679583Clytia hemisphaericaexon
TCONS_00056446-exon-scaffold_276-1575043694:678920..679583TCONS_00056446-exon-scaffold_276-1575043694:678920..679583Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:669075..679583 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.93417	7.79659	17.1562	16.3523	31.5003	22.5425	20.8996	22.2662	16.7271	12.6877	15.4886	10.2027	11.6605	12.9033	13.8331	13.0096	18.6219	17.637	8.78549	11.5019	14.6987	14.1714	13.9074	12.6191	13.9443	18.6787	9.17468	6.69563	7.81003	8.9768
Blast
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BLAST of TCONS_00056446 vs. Swiss-Prot (Human)
Match: RBM39 (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 368.237 bits (944), Expect = 1.229e-116
Identity = 192/387 (49.61%), Postives = 251/387 (64.86%), Query Frame = 3 
Query:  942 DHITQEERDARTVFIMQLARNLTIRDIQDFFSKVGQVRDVRLISDRNSRRSKGIGYVEFTDPSAVTLAIKLSGQRLLGVPIMVSPTMAEKNRFAAQQAAVTKPS-GPMKLYVGSLHYNITEPMLKAIFEPFGTIDSVQLQYDSETNKSKGYGFVNFQDSVAAKRAMEQMNGFELVGRPIKVNTVSERSDGS--MSFLDDEETEKGGIEMNAQSRASLMQKLAQTHGSGMQVPQVQQVXXXXXXXXX--------------------------------XXXXXTCLILSNLFDPTKETDQDWEMDYRNDVLEEVTKHGIVVHISVDTISPEGNIYLKCLTADVASKIVQSFNGRFFAGRTIRATPVPTANYHTMFADSVNAVRPLKP 1997
            D++T EERDARTVF MQLA  +  RD+++FFS VG+VRDVR+ISDRNSRRSKGI YVEF D S+V LAI L+GQR+LGVPI+V  + AEKNR AA    + K S GPM+LYVGSLH+NITE ML+ IFEPFG I+S+QL  DSET +SKGYGF+ F DS  AK+A+EQ+NGFEL GRP+KV  V+ER+D S   SFLD +E E+ GI++    R  LM +LA+  G+G+Q+P   Q +  +S  L                                     + C  LSN+F+P  E +  W+ + ++DV+EE  KHG V+HI VD  S +GN+Y+KC +   A   V + +GR+FAG+ I A  VP   YH +F DS+ A + L P
Sbjct:  143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAE--GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVP 527
The following BLAST results are available for this feature:
BLAST of TCONS_00056446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM391.229e-11649.61RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
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