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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056444 ID=TCONS_00056444|Name=TCONS_00056444|organism=Clytia hemisphaerica|type=transcript|length=1809bpRun BLAST on NCBI protein sequence of TCONS_00056444-protein >TCONS_00056444-protein ID=TCONS_00056444-protein|Name=TCONS_00056444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp MADDFDVDDLLEAPFQKVENGDDKVRKSGSESPATEQKKKKKRSRSRSRDRun BLAST on NCBI transcript from alignment at scaffold_276:667407..679583+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056444 ID=TCONS_00056444|Name=TCONS_00056444|organism=Clytia hemisphaerica|type=transcript|length=12177bp|location=Sequence derived from alignment at scaffold_276:667407..679583+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_276:667407..679583+ >TCONS_00056444 ID=TCONS_00056444|Name=TCONS_00056444|organism=Clytia hemisphaerica|type=CDS|length=22344bp|location=Sequence derived from alignment at scaffold_276:667407..679583+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056444 vs. Swiss-Prot (Human)
Match: RBM39 (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 365.925 bits (938), Expect = 1.633e-118 Identity = 190/381 (49.87%), Postives = 248/381 (65.09%), Query Frame = 1
Query: 487 DHITQEERDARTVFIMQLARNLTIRDIQDFFSKVGQVRDVRLISDRNSRRSKGIGYVEFTDPSAVTLAIKLSGQRLLGVPIMVSPTMAEKNRFAAQQAAVTKPS-GPMKLYVGSLHYNITEPMLKAIFEPFGTIDSVQLQYDSETNKSKGYGFVNFQDSVAAKRAMEQMNGFELVGRPIKVNTVSERSDGS--MSFLDDEETEKGGIEMNAQSRASLMQKLAQTHGSGMQVPQVQQVXXXXXXXXX--------------------------------XXXXXTCLILSNLFDPTKETDQDWEMDYRNDVLEEVTKHGIVVHISVDTISPEGNIYLKCLTADVASKIVQSFNGRFFAGRTIRATPVPTANYHTMFADSVNA 1524
D++T EERDARTVF MQLA + RD+++FFS VG+VRDVR+ISDRNSRRSKGI YVEF D S+V LAI L+GQR+LGVPI+V + AEKNR AA + K S GPM+LYVGSLH+NITE ML+ IFEPFG I+S+QL DSET +SKGYGF+ F DS AK+A+EQ+NGFEL GRP+KV V+ER+D S SFLD +E E+ GI++ R LM +LA+ G+G+Q+P Q + +S L + C LSN+F+P E + W+ + ++DV+EE KHG V+HI VD S +GN+Y+KC + A V + +GR+FAG+ I A VP YH +F DS+ A
Sbjct: 143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAE--GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTA 521 The following BLAST results are available for this feature:
BLAST of TCONS_00056444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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