TCONS_00056441 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056441
Unique Name	TCONS_00056441
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2292

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_276:646315..653006+

transcript sequence

>TCONS_00056441 ID=TCONS_00056441|Name=TCONS_00056441|organism=Clytia hemisphaerica|type=transcript|length=2292bp
AGGAGATTGTCAAAGATTTTGGTATAAAGGTATTAACAATGTATAACGTC
GGATACCAATTATTCAACCCCGTGCACGGGCAAACTTACCCTCAAGTACA
AACTGTCATTAATGACCGTGCCCTGATCAACCAAAGACTTCAAGCACTCA
TGAATATGTCATGTTTACGCATGCGTGGATTACCATTTTCAGCTGGCCAG
AAAGACattttgaatttcttggCTAATCATGCAGACAATGTGGTCAGTGC
TGTACACATCATTTATAACTTACAGGGACGTCCATCAGGTGAAGCATTTG
TTCAGATGAAGAACCCTGATCAAGCACACAAATGTGCTGGTGATTTACAT
CTCAAACATATGGGTGAGCGATACATTGAAGTCTTCCAATGCAGTGTACA
AGACATGACTTGGATGCTCGCCACCAGTCATGCTAACCAACTTGCATGCC
AACATTTGAGTCAACTTAACCACACCAAAACTCCAAAAACTTCATCCTCA
AATAATACTACATCCCCTGCTGGTGCAAAAACGACCTTCCAGCCATCCAC
ACCTTCTCCACCACCACCACCCATCCTTCAGACAACACAGGCACCACCCA
TGAACGGTATCCTGACATCACCACCTCCTCCAATCACCACCAACGGGTTC
TTCCCACCTGAAGTGTCACAGCCGTTACCCATCTACACGGGACCCTTCCC
TCCGATGTTCCCTCCACTACCACAACAAGGCTTCCTGCCACCACCACCTC
CCCTACCTCCACATACATCAGGGGTTCCAGCCATACCGACTGTCATGCCA
CCTATGTACGGAGACGCTATGCAGTTCCAAATGAACCCTTTCGGTAAACC
AGGACCAATGACATACATTGCTGTGAATTCACCTGAAGAAGCGCATAGAA
TCATTCAACATGAAAAACATATGCATAATAAATTTCTTCCAGGGAACGCT
CCTTACGTAGAAATGTTTATCGCTCATTAAATGTGATGTAAATATCCAAA
GAGATATAACAGCTACTCTTGCCAGCCACCTGTCAAATGGCTAAAATGGC
AGCGATGTCTACTTAGAGCCGATGAGTTGAGAGCTAGTGTTAGATTGGCA
CACTAGCTAGGCTTCTGGAAGCGTTTTTTTATGCTTGTTGACGCCTCACG
GTTTCCACTTAAGTGATCAACGTCCGCCCGTCAATTCAGCGAAGAACCGA
CAACTGAGTTTGCCCACAGCTAGATAGAAACTTTTGAAGGAAATAATATG
ATACAATAACAAGTCTATCATCtgataaagattttgtttttcaaccGAGA
TCATtaattttagatgaaaaatgaaaatatgataGCCCTTGGTTGACTTA
TTTTGGATCAATAATACTcacaatgttatttttttgtgtGAGAAACAATG
AATTCAAGATTTCAATGGTAAAATGCTgagcaaattttaaaattttatct
ttttacttgttgtttttttcttaattcataatattcatgacgtaatgttt
tccacggaaagaccccggtttttgccagtagtggcaaattttatacaact
tttgcctagtttaaatttgccactactgcctaaaaccggggtatttccgt
ggaaaacattacgtcatgaatatcatgaatatctaACATAAGTCTTCTAA
AGTTTAAACTtctttgaattgaaaattggtattttcaaaatattgaaaat
aaacgCCACCATATCGatgtttttagttttcttaCTGTACAATACTAACT
AAATCAGCTAAGCCATAATTCTTCTAGGCATAATTTGTTTACGCATACCA
AAATTGGTATTTGAAAAGTTTCtgtctgaaaattcaaaaagcgccaaatt
atgatttttattttgtcatattttctaGCTTTTATTGTTTATTGTTCCAA
GTTTAGAAATTACATTTAGTTGTTTTTCAGGTTTTATCTGAAACATGCAA
TTCTCTTCATTCGCAAAATTTGAGttatgaatttgaatttgaatttcctt
ACCCTTTGAGCTCTAAGTTCAAATAATTttccgaaaatatttttcaaatt
tttttcattttgcggAGAAGATTTTAATGACAGAAGagattaataatttt
tttgttttatttttattattgtcattttattattattaatacttactatg
aaaaattatcaatttacaATTTAACATTTTGCGAAGTTATTTtactaaag
aaagaaaaagaattatttattatttgttGCCTTTTGTGTACTATATAACA
ATTGAAAGAGATAAAATACTTTGAAatacaaacaaataaaaa

Run BLAST on NCBI

transcript from alignment at scaffold_276:646315..653006+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056441 ID=TCONS_00056441|Name=TCONS_00056441|organism=Clytia hemisphaerica|type=transcript|length=6692bp|location=Sequence derived from alignment at scaffold_276:646315..653006+ (Clytia hemisphaerica)
AGGAGATTGTCAAAGATTTTGGTATAAAGGTACGATAAAGTACACGTTGC
CTTTGCGGTTGATTGTGTTGTTAAGATTGTTATCTTCTCCTGCAGAGCTA
TGATacatgtagctctactgtattTGAAGCTTGGCTNCAGTGGTTGCAGC
TAGTCTTAAGATGCATAGTAGAGTTTTTATAGTTTATAATTTAATTTGCG
TATTTTCGAGAGAAGAGAGAAAGAGATTGTCAAAGATTTTGGTATAAAGG
TACGATAAAGTACACGTTGCCTTTGCGGTTGATTGTGTTGTTAAGATTAT
TATCTTCCCCTGCAGAGCTATGATgcatgtagctctactgtattTGAAGC
TTGGCTAATACAGTTTTGTCCGTCTGGAGATAATTTCAAATGATGGTTGT
CAgaatcattgagtttcaagcagAAGGCTAGAAAGGAATCTTAAACCTTT
CCTTAGGCGAGCAAAAATGAAGCCTTGAGATTCGCGCCGCTTTTGGAATG
ATGTATTGAATCtagcattttctttgttttctaccgcggcattatttttt
gaaaactgttGATAGATTTTAAGTTTAATGTGGCGTTTGTGTGAAAGCCA
GACGGGTCTCGCCTTTTGGATGGGAAATCGATGGCTTCATTTACAATCTA
AGAGTTTCTTCTCTAGCCCTTTAACTTGAGAGAAATCATTTAAGTTATTA
ACCAAACTCaactcaaaactttattttctgTGATATAAATCCAGggttta
tttgttttttactCTTACCCCAAAGCATGAGTTTGTTTTGTCATACagcg
gagtctccataactcaaacccGCACGAGGAACACGAACTTAAcgcgagtt
aaggagacatcagagttaaagagactctaatGTATTGACTTCTTTGTGTG
CGTACGGAATCAAATCCTGTGTCATCCATCAACTTGGAGTTTGATAATAT
GAGACATAAGATAGgtcttaaaaatgataatattgTTTCGTGTTTTTATT
CGAGAACCCGGAAGAGTAAATGAAAGTaatcaaatatattttgatcGTAT
CAGGTGATTTAGTCAGACAGGGAAACAAATTCTCGTAAAAACTACTAAAG
CATTTTTTCTTAGAATAACAGTTTTTTTTAGTCACTAGTTTTCTTGGTTA
TGAATTATGGAGCtatttgaattttattgttcTAGCTTTGATTTTCAGTC
AAAATTAAATGTGTTTTCAGTGTTGACATTATCGACAGGTTAGCATCGAA
ACGTGTTGTCCATGGGAAACACATGAATGAGCCTATCAAACACGTTAAAa
tgtagacgatgctatcgtccgttagagggtcagtaaacgcgggaaaatat
aTATGTGCAGAGTTAGTGCAGGGCGTTAGGGCGTTTACGGCAAAAAAGTA
GCGGTAGagtaaacacctccgccactgttTACTCCGTCCCCGGGCTAACC
ACCGTTTTAAAGTcatcccttttttagtgatctcgtgtagacgataggat
ttGCAATTGAGTCTAAAGACAGAAGGGTTGGAGAGGGATCTTTAACATTT
CTAAAGCAAGAAAATGTGAAACCTTAGGGTTTGCATTAATTAATGACGTC
TAGTGCTTTCTTCTGTTTTCTCACGCGGCATATTTTTCAAGATCTGGAGA
TGGATTTTACTTTTGAACTGGGGTTTATGGTGGCGTGTAACGTGTGTCTA
AGTTTAAACTCAACGAGTACAGTATGTCCAATAGTCCATAAATGATGTCC
TCTTTTTAGACAGTGCGTGTCTAAGAATTGCCTACTTAtcattagactgg
agtcgtttataatgcgtgtaataagTAGCATTGGCGTtttatgataatac
gattattgttacgggatttagtttgtataaactaaaatagactaaaattg
ttccctccgccattactttttgctttatttctactctgtctgatgaatta
gtcgtctagcttgctagactaacttatcaaagattttgctgtCTTATTAA
TGCGCTGATcatttttctgatgtttttacCAGGTATTAACAATGTATAAC
GTCGGATACCAATTATTCAACCCCGTGCACGGGCAAACTTACCCTCAAGT
ACAAACTGTCATTAATGACCGTGCCCTGATCAACCAAAGACTTCAAGCAC
TCATGAATATGTCATGTTTACGCATGCGTGGATTACCATTTTCAGCTGGC
CAGAAAGACATTTTGANGTGCTCTGATCAACCAAAGACTTCAAGCACTCA
TGAATATGTCATGTTTACGCATGCGTGGATTACCATTTTCAGCTGGCCAg
aaagacattttgaatttcttggCTAATCATGCAGACAATGTGGTCAGTGC
TGTACACATCATTTATAACTTACAGGTAAGGAAACtcttaattctttttt
tgtttttaaaatttatgttacccacagttgatgctctctattTTAATATT
CTACTTTTCTATACACTCTATTGTTCGATAATAccaagtttatgtatgtg
tcttttactgcgacggagacggtaaggttctaattggACTAAATCCTGAC
TGGCTGAGgatgacggtaaatcagcacttttaccatcCTCGATtatgcgg
gtcagaactgcgggttattccaaatcgcttcagtcactttaccgttttca
aaagtgcaaatacataaactcgctaatattgaaagtcaccctcaacaaga
aactctcgtaaacaacgctccattattcgacacactcccttattcgatta
TCAAGGGgttttcatcaaataagggagcgtatggaatagtagagcgtcgt
ttatgagagttcgTTGTTGTTGATGGTggatttcaatattatcgattAAT
GGAAcatatcgaataatagaacttcgaattagagagcgtcaactgcacTT
TTTTATTACAGTACATGAAAGGGGAAGATACAAGTTTCATCTTGAAGGTC
GCAAAGACCAGATTCGTGAGAACCATGTGGAGTGTATATTCATATAAGCT
CTTATCTCTTATGAATCTTTATTATACATTTCGGTCAACTCGACGTaaaa
aacgaaagtagttgCAAACGGCAAATCAATAAGAATAGAGATGTTAATCT
GACAAATTTCCATACGTTGAGTAgggtttttcttttcatttgattCGTAT
CTTATGATGTCGTtacgttttaaagatattaacAGATTACTTTACTTAAT
AATATGACGAAGATAGTATCTTTCAAGAAAAGCTTTTGTCGAATTTAGGT
ACTATCTTTAATACAGGAAGCTCGAAAATAGCCCCAAGCCATAGCCCTtg
cacaaaaataaacaatctaccaaaatgatttgatttttttatctaaaaat
gttcctaacaaATCAATAACAAAAACTCCCTCATCTTTTTCCTGCTGTAA
AATCTGTAACATTTATTCTACTGTGATTGAATGATTTCTACGGACGATAA
AATCGTCGGAAAAGTAGCCTACCCTGAAATCTATTCGTTAAACGAGAGCT
GACCGACTACCCGGTTCTACCCATTTCTTGATGAACTTGAACGCTACTCT
AGATTTGACTTTGAGAAATCACTCATCAAAAGGTTTAGATAGCTGTCTTA
ATCACTGTTTTTGGTATGAGAAACTATGAACAGATTTCGACCACAACTTT
ATCATAACATACTCGAGAAAAGTTTGAGATTTATTTAAGATTACATTTAA
CAGGTTAATCAGATCAATAGTAGAAAATGGGAAAAAgcgaaagaaaaata
ttcctaTGAATATTCTTATTCCTAAAAGCTTCTTCGAGTTCAGGAAACAT
CCGAGTTAAAGAAATTCGGACTATCAGACTGCATTTTCCAACTACTTTTT
CACGTTTAAAGGATATCATTTAACGGATCACGTACCTTTGCTGACACagc
attttttaagaaaaaactgaTATTTCTTTCCTCCGTGCTGCGCGAGCACA
AATGTTGAGAAATTACCATTGCCTATCTTGTCAACATAAAGAAAAGCCTC
CCTTTATACAGCGGAGTCTTGATCATTCCGAGCGCAACATTTGTGTTCAC
CTTGCAtgctcgagttatggagactctactgtttATCGTTTAAAAGAGTA
Tcctaaaggttttgtttttgaataagaagtggtatcgtttgcttactcgt
taattttgattcacaagctttttcgcattggattgacacggatgtggagc
aagatcagtcagaaagaggaaaagaaaaacattttttttgcttatatcaa
caTAATAAAACAAgaggcagacactgtcccgatatgaaatatgtgtctga
tatgaaacgcttatgtaaaaataaaacctttaatctcGTAAACGACTTCA
agcatttctttctttttcaatcacCAGGGACGTCCATCAGGTGAAGCATT
TGTTCAGATGAAGAACCCTGATCAAGCACACAAATGTGCTGGTGATTTAC
ATCTCAAACATATGGGTGAGCGATACATTGAAGTCTTCCAATGCAGTGTA
CAAGACATGACTTGGATGCTCGCCACCAGTCATGCTAACCAACTTGCATG
CCAACATTTGAGTCAACTTAACCACACCAAAACTCCAAAAACTTCATCCT
CAAATAATACTACATCCCCTGCTGGTGCAAAAACGACCTTCCAGCCATCC
ACACCTTCTCCACCACCACCACCCATCCTTCAGACAACACAGGCACCACC
CATGAACGGTATCCTGACATCACCACCTCCTCCAATCACCACCAACGGGT
TCTTCCCACCTGAAGTGTCACAGCCGTTACCCATCTACACGGGACCCTTC
CCTCCGATGTTCCCTCCACTACCACAACAAGGCTTCCTGCCACCACCACC
TCCCCTACCTCCACATACATCAGGGGTTCCAGCCATACCGACTGTCATGC
CACCTATGGTAAGTTTCTTCTCCTTGCTGGAAATTCATATCTTTTGTAGG
TTTTTAAATTGTAAAAGACTTTCATCACTTATAACAGTCAAACTCTTTCT
AAATTGAACGTCTATTATtcgaataataataatattttggATCCCTCAGC
TGAAAAGTGGCATAAATCACTCTGAATCAATCGCTTTGTAATTCCCATCT
TTTTGATAATAGATAATTTGTGGTCCCTTTGAGTTAATCGAataaaagag
agagagagagtcaaTTATATGTTATTATTCATGACCATGTTCTTTTCTTT
CTACAGTACGGAGACGCTATGCAGTTCCAAATGAACCCTTTCGGTAAACC
AGGACCAATGACATACATTGCTGTGAATTCACCTGAAGAAGCGCATAGAA
TCATTCAACATGAAAAACATATGCATAATAAATTTCTTCCAGGGAACGCT
CCTTACGTAGAAATGTTTATCGCTCATTAAATGTGATGTAAATATCCAAA
GAGATATAACAGCTACTCTTGCCAGCCACCTGTCAAATGGCTAAAATGGC
AGCGATGTCTACTTAGAGCCGATGAGTTGAGAGCTAGTGTTAGATTGGCA
CACTAGCTAGGCTTCTGGAAGCGTTTTTTTATGCTTGTTGACGCCTCACG
GTTTCCACTTAAGTGATCAACGTCCGCCCGTCAATTCAGCGAAGAACCGA
CAACTGAGTTTGCCCACAGCTAGATAGAAACTTTTGAAGGAAATAATATG
ATACAATAACAAGTCTATCATCtgataaagattttgtttttcaaccGAGA
TCATtaattttagatgaaaaatgaaaatatgataGCCCTTGGTTGACTTA
TTTTGGATCAATAATACTcacaatgttatttttttgtgtGAGAAACAATG
AATTCAAGATTTCAATGGTAAAATGCTgagcaaattttaaaattttatct
ttttacttgttgtttttttcttaattcataatattcatgacgtaatgttt
tccacggaaagaccccggtttttgccagtagtggcaaattttatacaact
tttgcctagtttaaatttgccactactgcctaaaaccggggtatttccgt
ggaaaacattacgtcatgaatatcatgaatatctaACATAAGTCTTCTAA
AGTTTAAACTtctttgaattgaaaattggtattttcaaaatattgaaaat
aaacgCCACCATATCGatgtttttagttttcttaCTGTACAATACTAACT
AAATCAGCTAAGCCATAATTCTTCTAGGCATAATTTGTTTACGCATACCA
AAATTGGTATTTGAAAAGTTTCtgtctgaaaattcaaaaagcgccaaatt
atgatttttattttgtcatattttctaGCTTTTATTGTTTATTGTTCCAA
GTTTAGAAATTACATTTAGTTGTTTTTCAGGTTTTATCTGAAACATGCAA
TTCTCTTCATTCGCAAAATTTGAGttatgaatttgaatttgaatttcctt
ACCCTTTGAGCTCTAAGTTCAAATAATTttccgaaaatatttttcaaatt
tttttcattttgcggAGAAGATTTTAATGACAGAAGagattaataatttt
tttgttttatttttattattgtcattttattattattaatacttactatg
aaaaattatcaatttacaATTTAACATTTTGCGAAGTTATTTtactaaag
aaagaaaaagaattatttattatttgttGCCTTTTGTGTACTATATAACA
ATTGAAAGAGATAAAATACTTTGAAatacaaacaaataaaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035570	XLOC_035570	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_276	supercontig	scaffold_276:646315..653006 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.116916	0.188775	0	0	0	0	0	0	0	0	1.99159	0.0482053	0	0	6.35887	8.5237	4.7393	9.13752	14.6554	12.8335	6.94688	8.43523	8.26083	4.48156	12.3868	8.77668	5.89127	3.44444

Blast

[Close]

BLAST of TCONS_00056441 vs. Swiss-Prot (Human)
Match: ESRP1 (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.057e-21
Identity = 44/95 (46.32%), Postives = 67/95 (70.53%), Query Frame = 3

Query:  159 SCLRMRGLPFSAGQKDILNFLANHADNVVS-AVHIIYNLQGRPSGEAFVQMKNPDQAHKCAGDLHLKHMGERYIEVFQCSVQDMTWMLATSHANQ 440
             C+R+RGLP++A  +DIL+FL   A ++ +  VH++ N QGRPSG+AF+QMK+ D+A   A   H K+M +RY+EVFQCS ++M ++L     N+
Sbjct:  445 DCIRLRGLPYAATIEDILDFLGEFATDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCHKKNMKDRYVEVFQCSAEEMNFVLMGGTLNR 539

The following BLAST results are available for this feature:

BLAST of TCONS_00056441 vs. Swiss-Prot (Human)

BLAST of TCONS_00056441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ESRP1	2.057e-21	46.32	Epithelial splicing regulatory protein 1 OS=Homo s...	[more]

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TCONS_00056441 (transcript) - C. hemisphaerica