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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056436 ID=TCONS_00056436|Name=TCONS_00056436|organism=Clytia hemisphaerica|type=transcript|length=1397bp TATGTAACCTGGAGAAATTCATTTAACTGTATTTGTTTGTTGCCTGCGAT GGCTATTTAATATAAGTGCTATTCTTTTTAGGTCTAAAAAAATGTCTCTG TGGATTAGAAGAGCCACAGAAGTACTTAAAAGTGCAAAAATAGCTACTGG AGTTCNATTAGAAGAGCCACAGAAGTacttaaaaatgcaaaaatagctAC TGGAGTAAGAACAAAAATTGTACCCAAGAATGCTGGCAAAATAGATTACA GGCGTGTTGGTTTCTTTTTTGCTGGTACATCAATTGCAACTACTTATGGT GTCTTGGTATTGTATGCTGAAAGCATAGAAGATAAACCTAAAAAGAAATT GGTAATCCTTGGCTCTGGCTGGGGTGCTGTCAGTTTGATAAAATCCCTAA AACCTGGTGAATTTGATGTCTCAGTAGTATCACCagagaattatttttta tttacaccACTTTTACCAAGCGTCACTGTGGGTACTGTTGAAGGTAGAAG CATCACTGAACCTATACGTAAGATACTGGCAAAGCGACATAAACATGGTG CAAAGTTCTATGAAGGTCAATGCACTGAAATTGACATTGAGGGAAATACT GTCAAATGTAAAGATCTATCAGAAATAACTGGACATCGTGAAGAGTTCTC TTTGAATTATGATTATTTGGTGTTAGCGATTGGTGCACAAACTGCTACAT ATAACATCAAAGGCATTGAGGAGCACACTCATTACTTGAAGAACATGAAG CAAGCACAAGAGATTCGTAAACACGTCATTGACTCATTTGAAACAGCTGC CATCCCTGGTCAACCTGACCATGAAGTGAGACGCTTGTTAAATTTCGTTG TCGTTGGTGGTGGTCCTACTGGTGTGGAGTTCGCTGCTGAATTAAGAGAT TTTGTGAAGGAGGATTTACGAAAGATTTTCCCTGATGAAATGATCGACAA ATCGACTATTACGCTTATCGATGGATTGAATAAAATCTTGAACAGTTACT CTGACGAGATCAGTCGTTACACCGAGAACAAGTTCCAAAGTGAGGGGATC AATGTTGTCACAAACACTTTCGTGGCTGGTGTCGAAGATAAAATCATCCA TTTGAAAGACGCTAAAACGCGTGATGTACGTAGCATGGATTACGGTATGT GTGTATGGGCTGCTGGAATAGCACCACGTGACCTGACCAAACAATTGATG CAACAAATCCCTGGCCAAACGAACAGaATGGCTCTGATTACTGACCCCTT CATGAAAGTCAAAAACACTGAAAATATCNGAGCTTGCAAAAGCATTGAAG TTGTTAAAACAAGAATTAAAACAATAAATAACGAATACCTCTAGAAAAAA CCCTTTCCAACTTTCGCTATCCTGGAAAAGGCAAAGGAAAATTTTCG Run BLAST on NCBI protein sequence of TCONS_00056436-protein >TCONS_00056436-protein ID=TCONS_00056436-protein|Name=TCONS_00056436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MKQAQEIRKHVIDSFETAAIPGQPDHEVRRLLNFVVVGGGPTGVEFAAEL RDFVKEDLRKIFPDEMIDKSTITLIDGLNKILNSYSDEISRYTENKFQSE GINVVTNTFVAGVEDKIIHLKDAKTRDVRSMDYGMCVWAAGIAPRDLTKQ LMQQIPGQTNRMALITDPFMKVKNTENIXACKSIEVVKTRIKTINNEYL Run BLAST on NCBI transcript from alignment at scaffold_276:587386..594616+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056436 ID=TCONS_00056436|Name=TCONS_00056436|organism=Clytia hemisphaerica|type=transcript|length=7231bp|location=Sequence derived from alignment at scaffold_276:587386..594616+ (Clytia hemisphaerica) TATGTAACCTGGAGAAATTCATTTAACTGTATTTGTTTGTTGCCTGCGAT
GGCTATTTAATATAAGTGCTATTCTTTTTAGGTCTAAAAAAATGTCTCTG
TGGATTAGAAGAGCCACAGAAGTACTTAAAAGTGCAAAAATAGCTACTGG
AGTTCNATTAGAAGAGCCACAGAAGTacttaaaaatgcaaaaatagctAC
TGGAGTAAGAACAAAAATTGTACCCAAGAATGCTGGCAAAATAGATTACA
GGCGTGTTGGTTTCTTTTTTGCTGGTACATCAATTGCAACTACTTATGGT
GTCTTGGTATTGTATGCTGAAAGCATAGAAGATAAACCTAAAAAGAAATT
GGTAATCCTTGGCTCTGGCTGGGGTGCTGTCAGTTTGATAAAATCCCTAA
AACCTGGTGAATTTGATGTCTCAGTAGTATCACCagagaattatttttta
tttacaccACTTTTACCAAGCGTCACTGTGGGTACTGTTGAAGGTAGAAG
CATCACTGAACCTATACGTAAGATACTGGCAAAGCGACATAAACATGGTG
CAAAGTTCTATGAAGGTCAATGCACTGAAATTGACATTGAGGGAAATACT
GTCAAATGTAAAGATCTATCAGGTATTGTAGactttttcattcttcaacc
CACAAGCCAATCTAATCGTAGTAGAAAGCCAAACTCTCCCAAAGAGGCCC
CCAACAGACCTTCAATTCaggcaatcacgcaatttttttcgcaattcaca
tAATTTCTGGTCACACAAAGTTTTCCAATTCACACATCCAtgcaatttta
taaaaattttcacgcattcacacaagTGAAAAAGGCCATTCACCTCGACT
CATGCTCTCGGCGGGGGAGAGGGGCGGCGACTTAAAAAGGAAGATAAACT
TTTATAATAAGGTGAACTTATGAGCTTACTGTGATGCTTATTTTTCTCAA
TGTTTGAGCTGGCagaataaattttaattttcccacaaaattttcttctt
cttttttttacagtgtgtatagtcttttttctatgagaacaattttataa
gaacacgaagttgaaaatttgcccaaacttaagaacaaactaagaaCAAT
GTGAgtctcaaatttcaaaaaattaagatcatCCCAGTCTGAGCCAAAGT
TTACTGGTACTTGATGTTATTGATTTATGATCTAATAAATACATTATATT
TTTTCTCTAAAGAAATAACTGGACATCGTGAAGAGTTCTCTTTGAATTAT
GATTATTTGGTGTTAGCGATTGGTGCACAAACTGCTACATATAACATCAA
AGGTATGATCTTTCCTCTAGTCTTgtgaagatttctttttttattgctta
tacaagggccaaattgaaaagtcccgttcctgtcacggaaggaaatcaga
gccttttttggtctttttttgaaaaatggtaaaatgaatgaaaaNNNNNN
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NNNNNNNNNNNNNNattctgagctccatacagggttgagctggttcccaa
tggttctaaaccttgTAGGACACTCTCCTGCAataaattagacccattga
agtccaagatttctaaaaacaacaagatatttttaatcagtcacggaagg
acaaggtgaaagtgtcacggaaggacaataATTTCAGACCTTGTAAGTGA
ATATGAAGGAGGTTGCTTTGGaatgtaatttcattttttNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNTTGGAAAATTTAAGggttatttaaataaaaaatcacagttacttatt
ttgtttgtaagatttttgattttgtgttttggttgacgacttttcaattt
ggcccaCAAGATGGATTTTGGCATTGAAAGCGAGAAAAAGCCAGTAAAAT
TCGGAGGCTTTACTATAAAAGACTTAGTGGGAATCTAACTAAAAAGACTA
ATTAAAAAACTCCAGTATCACAACTATATTACACGAAAACATAATTAGTA
TAAAACACGTGTACTAACAGATActaaatattttcttatcattgttttga
tgttgtcaCGGGTCAGTggagttttttatttcatatttaacATGACGATG
CATCTCACAAAAGTTcgacagttgactctctctaattcgatcttcaaggg
accaagaattttcttcgaattagagagtgatTTTAATACAGAAAGTAATT
TGTATTAATTTCTGAGGTGACAaatattttagtttgaattatagaaagat
tcgaatagaaGAGTTTGGTTGTATTCATATCTGATTATTCTTATAAACTT
ATCAATTCCAGGCATTGAGGAGCACACTCATTACTTGAAGAACATGAAGC
AAGCACAAGAGATTCGTAAACACGTCATTGACTCATTTGAAACAGCTGCC
ATCCCTGGTCAACCTGACCATGAAGTGAGACGCTTGTTAAATTTCGTTGT
CGTTGGTGGTGGTCCTACTGGTAAGTGAAGAAGTCCTATAAAAGAGCTTA
AAAATTCCCAAATACAGTGCGTCTTATAAGGGTTATCACAAGCGACTTTC
AATACAAATAAGTTCCAGTAAAAGAAACGCTACGTAACAttgagcttttc
cagaaaaatatcttacccccactgttgaggatattgatttttcgaagtat
cgaaccccctggatatcctactttatcaGTAAAATagtggatatccactc
ttaaaaatatgctcaaccctctggatatcctctcttataaagatgcttac
atcttgatattgtatttttttttacttgaaaagacactttaccccctgga
tatccgctcccttgtagttatttaaccccctggatatccacttttgaaca
aaaatcattaacccctggatatccaatatcctcaacagggggtgcacgga
ctatttctggaaaagcccattcttgGACGTTCCTGACCGTTCCCTTTTAT
TTACcagtttgaaaatgttttagaaCGTTCCAATACGTTTCCGAACGTTC
TTATCAAGTTGAATATTAACCTTTTGACAACAAGAATCGTTCGCGAACGT
TCAGGAACATTCCCTAACGTTCTGGAACGCTCGCGAACGGAAGGAAGGTG
TGAGATTCTCAATCAGATAGGTCTTCAAACTATAGCCTGTACTTGACGTC
ATGCCAACTTTTCTACgccatttttttgattttatcgaGGAACTTGCATA
ATTTCTGGAAACGTTGAGGGAAATAACAGTtactatttatttatttttca
ccaGGTGTGGAGTTCGCTGCTGAATTAAGAGATTTTGTGAAGGAGGATTT
ACGAAAGATTTTCCCTGATGAAATGATCGACAAATCGACTATTACGCTTA
TCGATGGATTGAATAAAATCTTGAACAGTTACTCTGACGAGGTAAGGTGT
AGTGATTGGTCGCAgtaaattggaaaaattctctgTTTTTTGTGAGTTTT
AATCTATCTAAAAGTGAATTGTTTTACTTCAAAAGTTTTAATTACAGGTG
ACTATTTGATAGGtcaaattatttaaaagttttaaacatTGTAGAATTGA
ATACGAAAATACGAAGAATACATTATAATAATGGTTATTAGTATTACATT
AGTAGTTATACTACGACACCGAAACTCTGGATGTAAAGCCTTACGATGGG
AATTGATTTTTAAACCATACTCTTATTtcggttgaaaaaaaaacggaCTG
AATGAtgctcaaaatttcatatctcCTTTAAAATACAGTGTGTCCTAAAA
AAGCGGACACATTTTTATAAGTAAATAAAAGAGGTAAAATCCGCAAAACT
TATGATCTAAACTGGGCTTAGAATGATTGAAATAAGTTTACAATTCTTTA
TTCAATCGATAGATATTTAATTCCCAAGACGACTGAATAGGTTTTGGAGA
TTGAAGTATTAAGTAAACAAGTAATAACATTTGGCATTTAAATAATGAGG
ATTTTACTCAGAATAAAAATTTGTCGCACACACTGTATATAATCTTGTTA
TCATTATTATCAATGTTCAGATCAGTCGTTACACCGAGAACAAGTTCCAA
AGTGAGGGGATCAATGTTGTCACAAACACTTTCGTGGCTGGTGTCGAAGA
TAAAATCATCCATTTGAAAGACGCTAAAACGCGTGATGTACGTAGCATGG
ATTACGGTATGTGTGTATGGGCTGCTGGAATAGCACCACGTGACCTGACC
AAACAATTGATGCAACAAATCCCTGGCCAAACGAACAGGTATGGGTCAAT
ATTAAGCTTGGTTGATGATATTTAAATTGAGGTCTGAATCGCTATGAAAA
AATACTGAGCTTGCAAAAGCATTGAAGTTGTTAAAACAAGAATTAAAACA
ATAAATAACGAATACCTCTAGAAAAAACCCTTTCCAACTTTCGCTATCCT
GGAAAAGGCAAAGGAAAATTTTCGGAATTGAAAGGACGGTGAAATTTTAG
CCGACGGGAAGTGAAATCTCACCCGAAACGCATTCGTGAATTCCGTTGTA
AATTGGGAGCAAGGGGGGTAGGACAGCCATTCTAATTCACGTCGGCATTC
GGCTATTGTCGACGCAAATTTGCCTTAGGCCTTTGCTAACGCAAATGTCG
ATGTAGTAAATTTGGCTTTTGCCGACGTAAAAATGTTTACTGTACTATAG
AAGCGAACATTTTTGCCGACGTAAAAATGTTTACTGTACTATAGAACCGA
ACATTTTTGCCGACGCAAATAAATCTGAATTAAGAAGGCTGTAGGAATAA
TGGCTTTCACATTAAAAATATTGGTGAAATCCTcaactttcttcttttca
ttttgaatagaATGGCTCTGATTACTGACCCCTTCATGAAAGTCAAAAAC
ACTGAAAATATCNGAGCTTGCAAAAGCATTGAAGTTGTTAAAACAAGAAT
TAAAACAATAAATAACGAATACCTCTAGAAAAAACCCTTTCCAACTTTCG
CTATCCTGGAAAAGGCAAAGGAAAATTTTCG Coding sequence (CDS) from alignment at scaffold_276:587386..594616+ >TCONS_00056436 ID=TCONS_00056436|Name=TCONS_00056436|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at scaffold_276:587386..594616+ (Clytia hemisphaerica) ATGAAGCAAGCACAAGAGATTCGTAAACACGTCATTGACTCATTTGAAAC AGCTGCCATCCCTGGTCAACCTGACCATGAAGTGAGACGCTTGTTAAATT TCGTTGTCGTTGGTGGTGGTCCTACTGGTGTGGAGTTCGCTGCTGAATTA AGAGATTTTGTGAAGGAGGATTTACGAAAGATTTTCCCTGATGAAATGAT CGACAAATCGACTATTACGCTTATCGATGGATTGAATAAAATCTTGAACA GTTACTCTGACGAGATCAGTCGTTACACCGAGAACAAGTTCCAAAGTGAG GGGATCAATGTTGTCACAAACACTTTCGTGGCTGGTGTCGAAGATAAAAT CATCCATTTGAAAGACGCTAAAACGCGTGATGTACGTAGCATGGATTACG GTATGTGTGTATGGGCTGCTGGAATAGCACCACGTGACCTGACCAAACAA TTGATGCAACAAATCCCTGGCCAAACGAACAGaATGGCTCTGATTACTGA CCCCTTCATGAAAGTCAAAAACACTGAAAATATCNGAGCTTGCAAAAGCA TTGAAGTTGTTAAAACAAGAATTAAAACAATAAATAACGAATACCTCTAG ATGAAGCAAGCACAAGAGATTCGTAAACACGTCATTGACTCATTTGAAAC AGCTGCCATCCCTGGTCAACCTGACCATGAAGTGAGACGCTTGTTAAATT TCGTTGTCGTTGGTGGTGGTCCTACTGGTGTGGAGTTCGCTGCTGAATTA AGAGATTTTGTGAAGGAGGATTTACGAAAGATTTTCCCTGATGAAATGAT CGACAAATCGACTATTACGCTTATCGATGGATTGAATAAAATCTTGAACA GTTACTCTGACGAGATCAGTCGTTACACCGAGAACAAGTTCCAAAGTGAG GGGATCAATGTTGTCACAAACACTTTCGTGGCTGGTGTCGAAGATAAAAT CATCCATTTGAAAGACGCTAAAACGCGTGATGTACGTAGCATGGATTACG GTATGTGTGTATGGGCTGCTGGAATAGCACCACGTGACCTGACCAAACAA TTGATGCAACAAATCCCTGGCCAAACGAACAGaATGGCTCTGATTACTGA CCCCTTCATGAAAGTCAAAAACACTGAAAATATCNGAGCTTGCAAAAGCA TTGAAGTTGTTAAAACAAGAATTAAAACAATAAATAACGAATACCTCTAG ATGAAGCAAGCACAAGAGATTCGTAAACACGTCATTGACTCATTTGAAAC AGCTGCCATCCCTGGTCAACCTGACCATGAAGTGAGACGCTTGTTAAATT TCGTTGTCGTTGGTGGTGGTCCTACTGGTGTGGAGTTCGCTGCTGAATTA AGAGATTTTGTGAAGGAGGATTTACGAAAGATTTTCCCTGATGAAATGAT CGACAAATCGACTATTACGCTTATCGATGGATTGAATAAAATCTTGAACA GTTACTCTGACGAGATCAGTCGTTACACCGAGAACAAGTTCCAAAGTGAG GGGATCAATGTTGTCACAAACACTTTCGTGGCTGGTGTCGAAGATAAAAT CATCCATTTGAAAGACGCTAAAACGCGTGATGTACGTAGCATGGATTACG GTATGTGTGTATGGGCTGCTGGAATAGCACCACGTGACCTGACCAAACAA TTGATGCAACAAATCCCTGGCCAAACGAACAGaATGGCTCTGATTACTGA CCCCTTCATGAAAGTCAAAAACACTGAAAATATCNGAGCTTGCAAAAGCA TTGAAGTTGTTAAAACAAGAATTAAAACAATAAATAACGAATACCTCTAG ATGAAGCAAGCACAAGAGATTCGTAAACACGTCATTGACTCATTTGAAAC AGCTGCCATCCCTGGTCAACCTGACCATGAAGTGAGACGCTTGTTAAATT TCGTTGTCGTTGGTGGTGGTCCTACTGGTGTGGAGTTCGCTGCTGAATTA AGAGATTTTGTGAAGGAGGATTTACGAAAGATTTTCCCTGATGAAATGAT CGACAAATCGACTATTACGCTTATCGATGGATTGAATAAAATCTTGAACA GTTACTCTGACGAGATCAGTCGTTACACCGAGAACAAGTTCCAAAGTGAG GGGATCAATGTTGTCACAAACACTTTCGTGGCTGGTGTCGAAGATAAAAT CATCCATTTGAAAGACGCTAAAACGCGTGATGTACGTAGCATGGATTACG GTATGTGTGTATGGGCTGCTGGAATAGCACCACGTGACCTGACCAAACAA TTGATGCAACAAATCCCTGGCCAAACGAACAGaATGGCTCTGATTACTGA CCCCTTCATGAAAGTCAAAAACACTGAAAATATCNGAGCTTGCAAAAGCA TTGAAGTTGTTAAAACAAGAATTAAAACAATAAATAACGAATACCTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056436-exon-scaffold_276-1491911889:587386..588007 | TCONS_00056436-exon-scaffold_276-1491911889:587386..588007 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1510915933:587386..588007 | TCONS_00056436-exon-scaffold_276-1510915933:587386..588007 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1575043694:587386..588007 | TCONS_00056436-exon-scaffold_276-1575043694:587386..588007 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1491911889:588598..588687 | TCONS_00056436-exon-scaffold_276-1491911889:588598..588687 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1510915933:588598..588687 | TCONS_00056436-exon-scaffold_276-1510915933:588598..588687 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1575043694:588598..588687 | TCONS_00056436-exon-scaffold_276-1575043694:588598..588687 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1491911889:591947..592105 | TCONS_00056436-exon-scaffold_276-1491911889:591947..592105 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1510915933:591947..592105 | TCONS_00056436-exon-scaffold_276-1510915933:591947..592105 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1575043694:591947..592105 | TCONS_00056436-exon-scaffold_276-1575043694:591947..592105 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1491911889:592890..593026 | TCONS_00056436-exon-scaffold_276-1491911889:592890..593026 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1510915933:592890..593026 | TCONS_00056436-exon-scaffold_276-1510915933:592890..593026 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1575043694:592890..593026 | TCONS_00056436-exon-scaffold_276-1575043694:592890..593026 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1491911889:593656..593873 | TCONS_00056436-exon-scaffold_276-1491911889:593656..593873 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1510915933:593656..593873 | TCONS_00056436-exon-scaffold_276-1510915933:593656..593873 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1575043694:593656..593873 | TCONS_00056436-exon-scaffold_276-1575043694:593656..593873 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1491911889:594446..594616 | TCONS_00056436-exon-scaffold_276-1491911889:594446..594616 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1510915933:594446..594616 | TCONS_00056436-exon-scaffold_276-1510915933:594446..594616 | Clytia hemisphaerica | exon |
TCONS_00056436-exon-scaffold_276-1575043694:594446..594616 | TCONS_00056436-exon-scaffold_276-1575043694:594446..594616 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_276 | supercontig | scaffold_276:587386..594616 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR023753 | FAD/NAD-binding_dom |
Vocabulary: Biological Process
Term | Definition |
GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
Term | Definition |
GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055114 |
oxidation-reduction process |
molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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