TCONS_00056435 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056435
Unique NameTCONS_00056435
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056435 ID=TCONS_00056435|Name=TCONS_00056435|organism=Clytia hemisphaerica|type=transcript|length=507bp
ACTGTTTGGATTTTTTATTGAAGACGCAAGTTTGTCTTAGTTGAATTGTA
CTgcattagattttcgaaaatgtGGGTAAAGCAGGTCATATTTATTATCC
ATATTTTCGCTTTTAACAAGGTTTTATCAAGGAATGACACATCACTGAAT
TCAGGCAGGTCGCCACCATCAGTTCTATTATACAGTGGCTTACACAAAGG
ACATCATACGGAGGTATGGAAACGAGCAGAAATCAGTTCAACGAAAGATA
ATCCATGTCTAGATGAAGAACAAGCTGTCCACATGCTTGAAATGGGACCC
TGGTCACCAGACGATTGCCACAAAGCACTTTGTATAATCATTGGTATCAT
CTTGTTTAGAAGTTGTCCAGAGGCAAGCCCTTGCGGTGATGGAGAATATC
TGAAATTGACGAGCGAGAAAACTGGTTGTTGTAAATGTATGCCTGTACCA
GGCTGAACCACAAACAACAAAGCAGGGATCCAAGGGATCCATGATGATAC
ATAACAT
Run BLAST on NCBI

protein sequence of TCONS_00056435-protein

>TCONS_00056435-protein ID=TCONS_00056435-protein|Name=TCONS_00056435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MWVKQVIFIIHIFAFNKVLSRNDTSLNSGRSPPSVLLYSGLHKGHHTEVW
KRAEISSTKDNPCLDEEQAVHMLEMGPWSPDDCHKALCIIIGIILFRSCP
EASPCGDGEYLKLTSEKTGCCKCMPVPG
Run BLAST on NCBI

transcript from alignment at scaffold_276:552659..556507+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056435 ID=TCONS_00056435|Name=TCONS_00056435|organism=Clytia hemisphaerica|type=transcript|length=3849bp|location=Sequence derived from alignment at scaffold_276:552659..556507+ (Clytia hemisphaerica)
ACTGTTTGGATTTTTTATTGAAGACGCAAGTTTGTCTTAGTTGAATTGTA
CTgcattagattttcgaaaatgtGGGTAAAGCAGGTCATATTTATTATCC
ATATTTTCGCTTTTAACAAGGTTTTATCAAGGAATGACACATCACTGAAT
TCAGGTAAGATTTAGTAAGATTTTAGACTAGAAAGGAGAAAgaatgaaat
tgtgtttttttttgttttgagctGTGAAATAGTCAAGTTCCAAACAAATT
TATTTCGTGATTAAGATCTTATTTTCATACATGACACAATCATGTTTAAA
TTCTCGAttgattgaaaatattgaaataaggTATTGCATCGCCATTGCAC
TGACATGTACAGAAAGGGCAATGCAATTGACTCTAGACAGTCAACTTTCT
TTCAAATTTAATTCATAATCTGAGTTTGGGCTGTCCAAACTAtagccatt
gagtttcaagcccgaaagtagaacgcgccgtaatcatggaGACGGATtat
atctacaatcatggtcgtaatatttgagaaaaaagggaaatccacctcCC
GGTggagttttgaaaccacaatcgatttgtaagtacTCTAAAGGTAGAGT
TTTAGcactgagttttaacatgagccTTAAAACTTAacaggaccttagga
tctgaggatccaaatgttcaaaaatggttcaataaggctcataatatagc
ctggaggtCTATAAAATAATCCCgacccaaattgaaatatccgattaaat
ttgagagatggcccaaaatcgactttctcgcccgaactccaaatatcgaa
aaacgaggaaattagcttaattctcaatagataTCGACTATGATtgtagc
ggttcctttgttttggaggactacattatttgaaatctagcgatagatta
gTTTtatagtttcaatccggcgtttgtgtaaaaactacgcgcgggtattc
tggatggaaaataagtggcttcatttcccatccaaaggTTATGAGTCTAG
CCTTTCGGACTTAGAAGTCAATGGTCCAAACTTAGAGATTTGATAGGAGA
ATTTCAAAGCAAGTTATGCTACTTTTTACAGGCAGGTCGCCACCATCAGT
TCTATTATACAGTGGCTTACACAAAGGACATCATACGGAGGTATGGAAAC
GAGCAGAAATCAGTTCAACGAAAGATAATCCATGTCTAGATGAAGAACAA
GCTGTCCACATGGTAGGTTTCTTAGCAACAGTTGCAATCTGTTTTATTCA
AACTGATACTCTAGCAcacaactttttgagtttattgaTCCATGGACGTA
TTATAACCTTTTTTGAACGCTATCAGAACTCCTGGTTATCAGGATCATCC
AAACGCGAAATAAGGGAATTGAAATGGAAACATAACGGGCTTCAAAATTA
ATGTTGGTTTGACAACAGAGTGATGAAGAAATTTTAATGAGGTACAGTTG
GGGTAAGGGGGCTCTAATACTTTCTAATATTGCTTTTAAAATCCAACTTA
TCATCAAGAGTCCTGTATCGTCGATTTACATTTTCCATGCACCATTCTAG
CTTGAAATGGGACCCTGGTCACCAGACGATTGCCACAAAGCACTTTGTAT
AATCATTGGTATCATCTTGTTTAGAAGTTGTCCAGAGGCAAGCCCTTGCG
GTGATGTAAGTGTTAAATCTTTCTAATTTGATCTTCAAAAGACCAAATAG
GTTTTCTTCAAACAGACAATATTAAAGTTCATGCTTTCTCTTGAGACCAA
ATTTTTAGATCGAAAATCATACTGCCGTATATTATCTTTGGATACAAAAA
ACTTCTAAGGAGCCACCAAACAGTTGTGAATTATAATTTGAGTTTGACAA
GGACCACTAAAAGGAAATTTTCAAAGAGTATTTTTTACTGACATTTGTTG
CTTACCAGACCCTTCAGTGCGAACAGCACAATCGcatagaaatttaaaaa
attggagatCACCATAAATACAACACACACAAAAGACTATTAATCTTCAG
TTGGCATTGGGCGTTTCCAAAAATAGATCGTACNGGTTTATATACAAAGC
TCAATGGTGAAActgtattgggcttttccagaaatagtccgtgcctcccc
cccccctattgaggatatcggatatccagggagttaacgatttttgttca
aaagtgaatatccagggggttaaatatctacaatgaagtggatatccagg
ggtgaagtgtcttttcaattaaaaaatacgatatccagggggtaagcatc
tttataagagaagATATTCAGGGggcagggggttgagcatatttttaaga
gtagatatccagggggtctttactaataaagtaggatatccagggggttt
gaTACTtccaaaaatcaatatcctcaacagtgggggtaatttttttttct
ggaaaagcccatttacgCCCTTTTATCTTATCCTCTTTTACTAAAAGATT
CTTCTTGGCTACTAAAGACAGGGACCAAGCTATCTACACCGGTCATGTTC
AAtattaggctgctggcatccactaattTTTATTCGTGTTCCTTATACTa
tctggggttttgtagaggtctgcgattcagactagttcaatattgttttc
attttatatacAGGGAGAATATCTGAAATTGACGAGCGAGAAAACTGGTT
GTTGTAAATGTATGCCTGGTAAGGaagttttgatttaaaatcttttaata
tATTGCTTTTAACacatacacacttttttataagaacattcaaaaatttt
gaagtcttcggtcgttcttaacttttgagttttaagcctataaAAAAGTC
CTTAACATGTTCctattttcgacatttttgtGAATAAAGATGTCCATTTT
TTAAGGGATCGGTTGTtctagagtccacaaagccttaagatgttcttaac
ttattcttatagtgaggtcaggtagcacataaaaacgtaagaatacttca
gatggtgattaaagcattaaatttggcacagatgatccatagagggtcta
aaacttaattttaaacagtaacaccaaattttgccacctctggccacctg
ccagatgacgtcatcaggtggctgggcaaaaaattatttttttgaaaata
ttcaaaatctgatggttctNcatgaaatgctgataaaaattgaggtataa
aacatgccttgaaaatcttcctatcaaaagttatggaggttgaaagtttt
ttgatgacgtcatcataagcctttccaagcaaaaattaaaaacctcgtaa
ttttggtacaaattgaccaaatttcatgttttatttaatcaccatctgaa
gtatttttatgctaacagacctcactattaATGTTTTGGAAACTGAAGCC
TTATGAACTTATAAAGCNAATTCTTATTAAGATTGCTTTTAACACACACA
CACTTTCTTATAAGAGCATTCAAAAATTTAGCCTTATGAACTTATAAAgc
ttgttcttacaaaaaaactttttgctttttacggataccgtcgttttgta
taagattccatAAGATTGGAAAGGATTTATTTTTTAAGGTATGGAGGAAA
ATCTTATATTTGCTCACGAAACTGTCCTGGTGAtgtggcaaaggaatctt
agtgtgGAAAttggaatcttatacaaaacggtACACAGGCGGTACGGttc
taaacttttacttgtTTAGTCTGGTATGATTTTGTAAAAGCTGAATTAAA
ATTGGACAGGGGTGTAGGTGTAAGAAATATTTCACAGTGAAGAAATAAAT
TCATTGAAGAATCATTCCTATCTTCCTTTTCTTTTAGTACCAGGCTGAAC
CACAAACAACAAAGCAGGGATCCAAGGGATCCATGATGATACATAACAT

Coding sequence (CDS) from alignment at scaffold_276:552659..556507+

>TCONS_00056435 ID=TCONS_00056435|Name=TCONS_00056435|organism=Clytia hemisphaerica|type=CDS|length=1935bp|location=Sequence derived from alignment at scaffold_276:552659..556507+ (Clytia hemisphaerica)
atgtGGGTAAAGCAGGTCATATTTATTATCCATATTTTCGCTTTTAACAA
GGTTTTATCAAGGAATGACACATCACTGAATTCAGGCAGGTCGCCACCAT
CAGTTCTATTATACAGTGGCTTACACAAAGGACATCATACGGAGGTATGG
AAACGAGCAGAAATCAGTTCAACGAAAGATAATCCATGTCTAGATGAAGA
ACAAGCTGTCCACATGCTTGAAATGGGACCCTGGTCACCAGACGATTGCC
ACAAAGCACTTTGTATAATCATTGGTATCATCTTGTTTAGAAGTTGTCCA
GAGGCAAGCCCTTGCGGTGATGGAGAATATCTGAAATTGACGAGCGAGAA
AACTGGTTGTTGTAAATGTATGCCTGTACCAGGCTGAatgtGGGTAAAGC
AGGTCATATTTATTATCCATATTTTCGCTTTTAACAAGGTTTTATCAAGG
AATGACACATCACTGAATTCAGGCAGGTCGCCACCATCAGTTCTATTATA
CAGTGGCTTACACAAAGGACATCATACGGAGGTATGGAAACGAGCAGAAA
TCAGTTCAACGAAAGATAATCCATGTCTAGATGAAGAACAAGCTGTCCAC
ATGCTTGAAATGGGACCCTGGTCACCAGACGATTGCCACAAAGCACTTTG
TATAATCATTGGTATCATCTTGTTTAGAAGTTGTCCAGAGGCAAGCCCTT
GCGGTGATGGAGAATATCTGAAATTGACGAGCGAGAAAACTGGTTGTTGT
AAATGTATGCCTGTACCAGGCTGAatgtGGGTAAAGCAGGTCATATTTAT
TATCCATATTTTCGCTTTTAACAAGGTTTTATCAAGGAATGACACATCAC
TGAATTCAGGCAGGTCGCCACCATCAGTTCTATTATACAGTGGCTTACAC
AAAGGACATCATACGGAGGTATGGAAACGAGCAGAAATCAGTTCAACGAA
AGATAATCCATGTCTAGATGAAGAACAAGCTGTCCACATGCTTGAAATGG
GACCCTGGTCACCAGACGATTGCCACAAAGCACTTTGTATAATCATTGGT
ATCATCTTGTTTAGAAGTTGTCCAGAGGCAAGCCCTTGCGGTGATGGAGA
ATATCTGAAATTGACGAGCGAGAAAACTGGTTGTTGTAAATGTATGCCTG
TACCAGGCTGAatgtGGGTAAAGCAGGTCATATTTATTATCCATATTTTC
GCTTTTAACAAGGTTTTATCAAGGAATGACACATCACTGAATTCAGGCAG
GTCGCCACCATCAGTTCTATTATACAGTGGCTTACACAAAGGACATCATA
CGGAGGTATGGAAACGAGCAGAAATCAGTTCAACGAAAGATAATCCATGT
CTAGATGAAGAACAAGCTGTCCACATGCTTGAAATGGGACCCTGGTCACC
AGACGATTGCCACAAAGCACTTTGTATAATCATTGGTATCATCTTGTTTA
GAAGTTGTCCAGAGGCAAGCCCTTGCGGTGATGGAGAATATCTGAAATTG
ACGAGCGAGAAAACTGGTTGTTGTAAATGTATGCCTGTACCAGGCTGAat
gtGGGTAAAGCAGGTCATATTTATTATCCATATTTTCGCTTTTAACAAGG
TTTTATCAAGGAATGACACATCACTGAATTCAGGCAGGTCGCCACCATCA
GTTCTATTATACAGTGGCTTACACAAAGGACATCATACGGAGGTATGGAA
ACGAGCAGAAATCAGTTCAACGAAAGATAATCCATGTCTAGATGAAGAAC
AAGCTGTCCACATGCTTGAAATGGGACCCTGGTCACCAGACGATTGCCAC
AAAGCACTTTGTATAATCATTGGTATCATCTTGTTTAGAAGTTGTCCAGA
GGCAAGCCCTTGCGGTGATGGAGAATATCTGAAATTGACGAGCGAGAAAA
CTGGTTGTTGTAAATGTATGCCTGTACCAGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035567XLOC_035567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056435-exon-scaffold_276-1491911889:552659..552812TCONS_00056435-exon-scaffold_276-1491911889:552659..552812Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1510915933:552659..552812TCONS_00056435-exon-scaffold_276-1510915933:552659..552812Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1575043694:552659..552812TCONS_00056435-exon-scaffold_276-1575043694:552659..552812Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1491911889:553740..553870TCONS_00056435-exon-scaffold_276-1491911889:553740..553870Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1510915933:553740..553870TCONS_00056435-exon-scaffold_276-1510915933:553740..553870Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1575043694:553740..553870TCONS_00056435-exon-scaffold_276-1575043694:553740..553870Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1491911889:554209..554313TCONS_00056435-exon-scaffold_276-1491911889:554209..554313Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1510915933:554209..554313TCONS_00056435-exon-scaffold_276-1510915933:554209..554313Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1575043694:554209..554313TCONS_00056435-exon-scaffold_276-1575043694:554209..554313Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1491911889:555272..555326TCONS_00056435-exon-scaffold_276-1491911889:555272..555326Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1510915933:555272..555326TCONS_00056435-exon-scaffold_276-1510915933:555272..555326Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1575043694:555272..555326TCONS_00056435-exon-scaffold_276-1575043694:555272..555326Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1491911889:556446..556507TCONS_00056435-exon-scaffold_276-1491911889:556446..556507Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1510915933:556446..556507TCONS_00056435-exon-scaffold_276-1510915933:556446..556507Clytia hemisphaericaexon
TCONS_00056435-exon-scaffold_276-1575043694:556446..556507TCONS_00056435-exon-scaffold_276-1575043694:556446..556507Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056435-proteinTCONS_00056435-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:552659..556507 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.76604	1.14181	0.153061	0	0.702265	0	3.25664	2.85439	3.6422	1.64455	3.85332	8.4155	1.9662	2.01529	0.253112	0.264863	1.95682	1.34748	1.22853	1.36512	0.894752	0.684467	0.32649	0.522659	0.132139	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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