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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056392 ID=TCONS_00056392|Name=TCONS_00056392|organism=Clytia hemisphaerica|type=transcript|length=1118bpRun BLAST on NCBI protein sequence of TCONS_00056392-protein >TCONS_00056392-protein ID=TCONS_00056392-protein|Name=TCONS_00056392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp IQATNKINFSKMVYLFSVSRKEDVNEFFDTKDLLGRGATSEVYKVIQKGTRun BLAST on NCBI transcript from alignment at scaffold_275:68987..84094- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056392 ID=TCONS_00056392|Name=TCONS_00056392|organism=Clytia hemisphaerica|type=transcript|length=15108bp|location=Sequence derived from alignment at scaffold_275:68987..84094- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_275:68987..84094- >TCONS_00056392 ID=TCONS_00056392|Name=TCONS_00056392|organism=Clytia hemisphaerica|type=CDS|length=10923bp|location=Sequence derived from alignment at scaffold_275:68987..84094- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056392 vs. Swiss-Prot (Human)
Match: KCC4 (Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1) HSP 1 Score: 411.379 bits (1056), Expect = 3.517e-140 Identity = 199/305 (65.25%), Postives = 249/305 (81.64%), Query Frame = 3
Query: 42 YLFSVSRKEDVNEFFDTKDLLGRGATSEVYKVIQKGTKNEYAMXXXXXXXXXXXXXTEIGILLRLKHTNIIRLKEIFESETHLFLILEYVSGGELFDRIVDKGFYSEQDAARCVNQICQAIDYLHENDIVHRDLKPENLLYATKDEEAPLKLADFGLSKMLKHDLTMQTVCGTPGYCAPEVLLGKNYGPEVDMWAVGVITYIMLCGYEPFYSDADDNKEMFRKILKCEFKFDSPWWDEVSINAKDLVMRLIVLEPEKRLTAKQALEHPWVQGKGANILHMENAQVKLREFNARRKLKGGAHAVIA 956
Y S ++ +++FF+ + LGRGATS VY+ QKGT+ YA+K +KK +DKKI++TEIG+LLRL H NII+LKEIFE+ T + L+LE V+GGELFDRIV+KG+YSE+DAA V QI +A+ YLHEN IVHRDLKPENLLYAT +APLK+ADFGLSK+++H + M+TVCGTPGYCAPE+L G YGPEVDMW+VG+ITYI+LCG+EPFY + D + MFR+IL CE+ F SPWWDEVS+NAKDLV +LIVL+P+KRLT QAL+HPWV GK AN +HM+ AQ KL+EFNARRKLK AV+A
Sbjct: 32 YWIDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD-QFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVA 335 The following BLAST results are available for this feature:
BLAST of TCONS_00056392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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