TCONS_00056391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056391
Unique NameTCONS_00056391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056391 ID=TCONS_00056391|Name=TCONS_00056391|organism=Clytia hemisphaerica|type=transcript|length=1640bp
ttatacAGGCTactaataaaataaatttctcaaaGATGGTTTACTTGTTC
TCGGTGTCCAGAAAAGAAGATGTCAATGAATTTTTTGACACAAAAGACTT
GTTGGGAAGGGGAGCAACATCAGAAGTTTATAAAGTGATacaaaaaggaa
caaaaaatgaatatgcaatgaaaaaaataaagaaaaatattgataagaaa
ataatcaaaacggAAATTGGAATATTGCTCAGACTCAAACACACAAACAT
TATCCGACTGAAAGAAATCTTTGAGAGTGAGACACACTTATTTTTGATAT
TGGAATACGTCAGTGGTGGTGAATTATTTGACAGGATCGTAGATAAAGGT
TTTTACAGCGAGCAAGATGCAGCTCGATGTGTTAATCAAATTTGCCAAGC
CATCGATTACCTCCACGAAAATGATATTGTGCATAGAGATTTGAAGCCCG
AAAATCTCCTATACGCAACAAAAGATGAAGAAGCACCATTGAAACTTGCA
GATTTCGGTCTCTCCAAAATGTTGAAACACGATTTGACGATGCAGACTGT
CTGCGGAACGCCTGGTTATTGTGCACCAGAAGTATTACTTGGTAAAAACT
ATGGACCTGAAGTTGATATGTGGGCTGTTGGTGTTATCACTTACATCATg
ttATGTGGCTATGAGCCTTTTTATAGCGATGCTGATGACAACAAAGAAAT
GTTCCGTAAAATTCTGAAATGTGAATTCAAGTTTGATTCGCCATGGTGGG
ATGAAGTATCTATCAACGCTAAGGATTTGGTAATGAGATTGATCGTATTG
GAACCTGAAAAACGATTGACTGCAAAACAAGCACTTGAGCATCCCTGGGT
ACAAGGAAAAGGTGCTAACATACTACACATGGAGAATGCGCAAGTGAAAC
TTCGAGAGTTCAACGCAAGACGGAAACTGAAGGGTGGAGCACACGCCGTT
ATTGCTGTCAATGAGCTgatcaaaaaatttaaagttaacaaataaaaaag
tatNGGCACACGCCGTCATTGCTGTCAATGAGCTgatcaaaaaatttaaa
gttaacaaataaaaaagtatgaAGTTGGGTTCTATTCATTAAAAACCAAA
AGgatagaaaaaatttaaaacattgacGAAATTTATGTGCGACGAGATCT
TGTCGGTGaattctttttgtatttttgagaaTTCTGGGAAATCTTAAATG
GTATTATGTTGTGATATATGAGAGGGTCGTCGACGAGAGAAATTTTCGTT
TCAAAGCAATCATGGCAAGTATAAATACATGTTCCTCGATAGACAGAAAA
ACTATTTTGGATGGTGAAAACCTGAATCTATACAATTTCATTTTGTTGCC
TTCGTCGTTTGAGGCTTTGGGGAGGAAAAAGCTGTCTCCGTCAATATGAA
AACAGTAATTTCTACAACGTTGTTATTCCTTTATATGACTATTGGCATTC
AGCCATACAACGTTCCTTGGTTGTCTATATTTTTTGCATTCTGCTTATTT
ATTTGTATTGGGTATTTTTAGATGCTAGAATTTCGAACACGTAATCAATA
ATGGAATAACAGAGATAGAGATACGTAGTATTGGGCCGTACACATAGTAC
GTACGTACTAAGGGGAGGAGGGcgagtcttctcaaaagcg
Run BLAST on NCBI

transcript from alignment at scaffold_275:68987..84094-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056391 ID=TCONS_00056391|Name=TCONS_00056391|organism=Clytia hemisphaerica|type=transcript|length=15108bp|location=Sequence derived from alignment at scaffold_275:68987..84094- (Clytia hemisphaerica)
TTATACAGGCTACTAATAAAATAAATTTCTCAAAGATGGTTTACTTGTTC
TCGGTGTCCAGAAAAGAAGATGTCAATGAATTTTTTGACACAAAAGACTT
GTTGGGAAGGTAAGCAATTGTTCCACTTTTTTACAGAAGATACTTGCCAA
TCTTCCCTTTTAAGTGTAGGTAAGTCTTACAGCTAGCAGTTTTCCACCAA
TATTGTTGCCGCCAGAGATGTCACCACATTTTTATAAGGTGTGGTGTGGT
ATACGGTGAAGGCTTCTTCGTAAAAGCGAAAGACATGTGTCTATTTTTCA
GATCCGGCATGCGGGAATAGTGTCAGGACCTGCAGGCGACCTGGTAGGGT
TGGGTATGGGTGTGGTTTGGGTGTGGTTTCTTATCAGATTGGCTAGGAAT
TTGGTTATTATCAGTTAGGGTTAGGTAGGGTTGGAGCTCGAAACAAGCAC
TCTTAATTGTGATTTCTTCTTAATACAGTCTGGTCTGTAGTTTGTACAAT
ATAAATAGCCGTCAGAAACACTCTCTCGACATGAATCCGTGGCGCAGTGG
ATAAGGCATTGGGTTTCAAAACATCGGAACTTTGCATTTAGTGGGTTTGA
ATCCCACCGGTGGCAATCTGTCGGTAAGTCATTCAGTAAATTAGAAAACA
TAGAAAATAACTCACATAGAACCAGAAAATCAGAAAAACTACGAACAAGA
GACTGGAAAATACGAAATAAATCCAGATCTGTCTTTCGTCTTTACGAAGA
AGCCACGACCATGGTATACTGCCAGTGCATATTAAAGGGATAATCATATG
GTTTGAGATATTTGGAAATAGAGAAATAGAAATAGAAATAAATCTCTTTG
ACAACAAATTTGTTTTGATAACTCCTCCACCAAGTTTATTAACCATACTT
TCTGCCATAACATGTCAAGATAACTTTCACACTTTTTGATAAACCAGACG
TCCGCACTCGATAGGATCGATCATCGGAACTGCTCGATGACGGATCGATA
TGTGATTGATGGATTACTTAACGATCCAGATAGGAGATCAATGGAAGATT
CAACCATTAAAAAGTCTTGAGTATCGATCCTCCGTTGATCCGTTATCGAG
CTTGTATTTCAATCGAGTATACCGATTCGTCATCGATCTTTAATCGATTC
GTCATTGATCGTTAATCGATTTGTTATCGATCGTAAATCGAGTATAGACA
GTTAGGGAAACCATCCAGGATCCTGCCATCCTATAAGCCAGCAAAAACTA
AATGACACTTGTAAACTTAAGTTTCTTACCATTTTCCATCGAAAACAACC
AAAAACAATGCTAAGAGAGACCAAAACAAATTAACTTCCAAGATTATGGC
GCCCTTTTGGATCTATTGTTAAGGCCATTTAAAATGGTGGAAAGAGTTGC
GGAAAGACAAAGGCGCTCGCTGCGTCGGNNACAGTGTGCTTATACTTACT
ATGTTTGCTACATCGTCTAGGCTAAAAAAAGTGCGAAAAGACACGAACGC
CATTTTTTATTGAGTGACGTTATGATTTTTTTGATTGAGGCCGCGTACAG
GAACTCGCCAAATGTTCCTAACTGATAGACCTTTTTCCAAAGAGGAAGTC
CTGTTGAATAATTATGTAGTCCAGGCATAAAAATAATAGAGCCATGCATA
ATTACTGTATCATGCATATTGTAATAATTATGCATGGTTTTATCATTGTT
TTTCTGCTGGACTACATAATTATTCAACAGGGTGGTCTCTTTGAAAAAAG
GTCTATGAGTCGATAGGGTCAATAAGATCAATAAAAGATCGATGATGGAT
CGATAAATAATCGATAACTAATTATAAGCTTAAAAGAACGCATAGTTTGC
AGAGGGGTATGAACCCCCCTAGGTTTATTTCATCCCCCCCTATATACCCA
TCCCCCCCTTTTGTAATGAAATCTTATCCCCCCCTTTTTTTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTTTTT
TATTTGATCCCCCCCTACATTCCCACCCCCCCTAGTTTTTTCGGCAGATC
TCGGTACCCCCCCCCCTACAAAGGCCCTCCAGAAAGTTGGCATCCCCCCC
TATTAAAAAGGGGGGGTGCAAACTATGTTGAGACTTTAAAAGAGATTGGA
GAATGTCTTAACTCCTCAAATGGAAATTTCTAATTTTATAGGTACTAGCA
GGCAGTTAGTCACATTAGCGTCCCGCCAAAATGCTTATCAAAGATTAATG
CTGCGAAAGGGCTATATCGTTTACTTGACTCTCAAGCAAAAAAATGCGCC
GCAAAAATTCTAAAGGGATTCATGAAAAAATAACCCAGCGCTTTTTAATA
AAATTAACATTTTCAAAAACTTTGAGAAATTGCCTAAAATTTGAGCCATA
GATGAAAAAATTTGAGCTAAGCCAACCTTGATAACTAGTTTGAAGATCAA
TTTCCCAAGAAAAAGATTTATGGAAGAGGCGGAACCCACCTGGATTGGCG
CACCGCCGGATAGACTATTTCCCGGAAATTTTGCCGGACCTCAAACAATG
ACCCATTTACATGTGCGGAATTATTCTTCCTTTAGAGTATAAAGAAGGCC
TTAAAAATCGAAGCGCTGTCTCGGGAATTGAATGAAAAAATTTGGTTGGT
TGATATTCTGGCTGCTGCACGTTCGCAATCTGTCATTTTGTCTCATTTTA
AGTTTTCAAGTTTTAACTGATTGTCTTGGGATCTTGAACTTAATTTAGGT
AACTCTCACCCTTGTTGTTGCAAATACATCCTGTAGATAACTGATGTTGG
TTTTTCTGAAAGCTTGATTTCCTAGTGTGACTAACTGGCAGGGTTTACCC
TGAGTATCAGAGGCTAAGTTTTTAAAGAGAAAATATATTGTAAACTATTA
TCTTAAGTTTATATATTTATTCGGACTGTGATACTCACAGTAAGAAGGGT
TAACAGCCCGTTTGCTGTCCCCTTTACTGAATTGAAATAAGAGTCAGTCT
TCAACTAAAAAGTTCTGAAAATCTCGATGAGTGCGAAAAAAAGCATCACA
CAAAATGAATATCTAACACTAATGATCGCAACTTTGAGAGTTTTTGTGTG
TAAGAAGTTACTAATTCTATGTTAATTATAATTTCTTTTGGAAATTTCAC
AACGCATCTGACAAATTTTTTGAAGGCACCGAAAGAAATTGGGTTGGACA
TGATGTCCGACTAGAATCGATTTGGGTCAGACAATGTCGATGTCCGACCG
TTATTTCGAGCCCTGTGAAAATTACAACTCCACACCTGCCAACTTGAGAT
GGTATAGAATTAAAGTTTTCAAAGCAAAACTGAAAACTTTGTCACGTTTT
TCTGATTTTCTATTTTTCAAGCTCAAGAAAGAATTACCACTAACTATCTG
ACCTGACGGAAATAAAGGGCCAGAAGGGGGAAAGAATATTTTAATGATTC
TATGAAGCCGCTAGATTCAAGGACCACCCCTGAAAAAAGGTCTCTGTGTC
TTGAAATACATATACGACCTTTTAGGATCTGTAAGTAGCTTTTTTCAGCT
TTGCATATAATTGCATCACCTCATGTGTTTTATAAATCTAATTACTAGTG
ATTTTGAACATCATAGCCACACAAAAAAATTCTTTAAAGACAATAAAGTG
AAAAAGAAATTTATGTCAACATTAATACAATAATGACCCAGAATGTCAAT
AAGATAAATTGTTAATTGTTTTAATTGTTAAAATGAAAAAGAAAAACTGT
TATTGCAAAAGAATTCTGTGAAGTTGAGACTATTTTTCAAAAGTGGGGAT
TCTGAATTTCTGTTCTTACCTCAGTTTTCAAGCAAAATAGGCTTAAGTCT
GTCTAATTGATATTGGATGTAAAGCTACATTATGTCTTGTTAATAATTTT
ATGTCCTTGTTTTGAAAGATGAAGAAACATGTTCTGGTGACAGATACTTT
GATTATGTTATTCATGTCGATAAAAACTTTATTTGTATTCGTAATTTCTT
TCTCTTTATAGGGGAGCAACATCAGAAGTTTATAAAGTGATACAAAAAGG
AACAAAAAATGAATATGCAATGAAAAAAATAAAGAAAAATGTATGATTCA
TTTTATTTGTTTTTTCGAACTACTAGAAATAAATCATTTGTTCATCTCTA
GTGATCCTGTCATTTATAAAAGGTCTCAAACTCGTCTAACTAGAGCTTTA
CTATGGTTTTAAAAAAGTTTGACTTGTGTAACTTATGACATTTCCAAAAA
GGACATCAGTTTGGCGCAGACAACTGGAGGAGGCCTTAGGCATGGTCATT
TATACGTCAAAAGAAGAGTATTAGGATGTAGAGTTCAGAAAATGTCTGTT
AATAGAATTAATTAACTTTTTGTCCTTTTTGAGAAATTAGGGAAAAATTG
CTATTATGCGTATCATAATTGATGACGTCATTAAACTTAAAATTTGAATA
TTTTAAAAACTAATGATCAAAATAGGATGAAATTTTGCCCAATGATAAGT
ATTGAAAATAATATTTATGAAATAACAGATAAATATTATGGTTCTATTGT
ATTAATATTATATATTTGGATTTTAATTTTCTTTAGATTGATAAGAAAAT
AATCAAAACGGAAATTGGAATATTGCTCAGACTCAAACACACAAACATTG
TATGTATTTAAATTTAATCTCAATCTTACATTATATTCTATTCAAGTTTA
AATGTATCTAAATTTCATTCAGGAGGGACTCCTATAGTAGCTGATTATCA
AATAATTTTATTCAGATTGTTAATCCTGGTTTGCATTCTTTTATGCTTTT
GTGTTTATCAGCCTAGGCTAGGCTACACAGTTTGTTTATAAGAATTACTT
ATAGTATAAAAATAATTCTGATGAAAATAACTGTGTATACAGCTAATGGA
TAGTGCTGTCTTTTTTAGATCCGACTGAAAGAAATCTTTGAGAGTGAGAC
ACACTTATTTTTGATATTGGAATACGTCAGTGGTGGTGAATTATTTGACA
GGTAATTCGAAAATACATTTTTTTATAAGGACAAACTATATAAAAACATA
AGGCTTCGATTGTCAAAATTTTTAGAACAAGTTAAGAACATTTTGAGGCT
TTGTGGAATTTAAAACACCCGATTTCTTAGGAAAATGGACTAAAATACCC
ACAATATAGTGAAAATAAGAACATTGTTTGGCTTAAAACTCAAAAAGCTA
TCAACATCCAAAGGCTTCAAAAATTTCAAATGTTCTCATAAAAAGACAAC
TTGNATAAGAACATTGTTAGGCTTAAAACTCAAAAAGCTATCAACATCCA
AAGGCTTCAAAAATTTCAAATGTTCTCATAAAAAGACAACTTGTAATCAT
GAATTGGGATCATTATAATTGAATCGAAATAGCATCTTAAGTCTAAGACA
TTGTGTTGTGCTATTTGTTACCTAACGCCTTAGGTGTAAACTCATAAATT
GTTCCCAAAAAGTGATTTTTGATCTTTTTATTATTCATGTGCAGTATCAG
TAACTGTGGAAGTAACTGTTTGCAATCGAATAATACCCTCTTTAGATTGT
TTGTTTTTGTCATAACATAAGAATTATTTATACTTGATATTTTGACGAGT
TGTTTAAAAAATAATTCGAAGTGTTTTTATTTCTTCTGATAAATCTTTGC
TTGTAAATTTGTAGTTGCTTTGGAGATTCATTCATCCTGCCTTTTACAAA
TATGAATTATGAAAGTATCCTCCCCAATACTTTTAGCCCAAATGATAATA
ATATTTTTTGCTGTCTTTAGCACCAGCTCTCCCATCCTGTTTTAATTCTG
CATCATATTTCTAAACCAGAAATAATTGTATAATAATTGTATCAATATAA
TAATTGATAATTGTACATAAAAGAATCACTCCTCTTAAAAAAAGACCAAT
TCACCAATTCTTTTATACGTCAAGGCGTGAATTCCAAGATTTTAGAATTT
TACTGTAAAGGCTGGGCTAGGCGATTTCATATTCAGATGCAAGGTTGTCC
AAAAGAAATTGTCAAATTTTTTCAATAAGGTAAAATATACTTTGGGCAAT
TTGCAAATCAACAAAACTAACAAACTAAACTAAACAAACTGTGAACTACT
TTAGGCGGACAAACTTTCGCAATTTTCGCGAATTTTGGCATTTTTCGCGA
AAGTAAATTTTGTCGTAAATTTCGCGATTTTTTGACCTAGCAAAAGTTTC
GACTCTTGAAATTTTATACGCCTAAAGTAAGTAGTTCACTCAGTTCACTT
TGAAGTGATAAACTATTAACTTTTAAAATTCATCTTCCACTTTAAATCTG
CTTATCATTTTCAGGATCGTAGATAAAGGTTTTTACAGCGAGCAAGATGC
AGCTCGATGTGTTAATCAAATTTGCCAAGCCATCGATGTGAGTAAATACC
TCAATATTTATTATGAACGGGTTTTTTTTCAATGAAATCTGTGGCCACCT
CCCAATTATTCAGTCTAATGTTTTCATGAATTTTTCAAGCATGGTGTCAT
CTTCAAAACTTGAATTAAGATGACCTGTTTTCTTAATGTAAACGCAATTC
AAGTCCTTCAATCTAAAAGATAAATAAAAGAACAACAATGATTTAGTCAT
TCTTTTACACAGATTTAACAAATGTGTGATTTGATTTTATCCATAAACAA
ATTCTCGTTTTTTTAGTACCTCCACGAAAATGATATTGTGCATAGAGATT
TGAAGGTACGTTTTTTATAATTAATATTTACAACCACGTTTTTTAAAAGC
AAGACAGCCACGTTGAATAACTAGTACTCTCGCCTCGTCGACTATTCATT
TTCATTACATCGCGTTAACATTCGATTTTTGATGGCCTATACTANGCCAC
GTTGAATAACTACTCTCGTCTCGTCGACGAGACGACGAGTCGAGACGAGA
CGATTCCACTTTGCGACTTTTTCGAATGTTTTGAGCCCAGGTTTTCGGGC
TCTAAACATTCTATTTTTTTACGTCACTTTAAACGTTTGAAGCTCCTGCG
GTAGCAAAAAATCAAATTTGCGTCAAAACACTTGAAAGGCTTCTATTTTT
CGAAAATCGTCAAAGTGGAACCCACTAAGAAACGGGATGAAAAATCCCGG
TTTTTGGTACCTCACTCGCTAGATTTTTGACAGCACTTCGAATTTTCGAA
GATAACGAAAGAAATTTAACATTTGAAAGGCCAGGGGGGGGGGTCAACAT
TTATAATACCAACCCATAGCCCAAAAACCTGACTTTTGACCTTTTGAGCT
AAGTTAACACCACCACCCTAAAATTGGTATCGATACCAACTTGAAAATCA
TAATTTTCAGAAAAAGGGGGGACCTACCCCCTTATTTTGGTATCGATACC
AGCTTGAAAATCATAATTTTCAGAAAAAGGGGGGACCCACCCCCTTAATT
TGGTATCAATACCAACATGACTTTTTGAATTTGACAAAATATCATGGGAC
CCACCCCCTAATTTAGTACCAATACCAATCTGACAAATTTGAGTTTAAAG
CTGTTTAAAGGGGACCCACCCCCTTCCACACAAACAGGGTACTAAGAGAA
ACTTTAAACTAGTCATAGCTTTCACTAAATGCCCCCACTGAAAGGTCATG
TCATGAACTTATAAAGCTTCTAATGCTTTAAAGATCTATAAAGCTTTTAA
TGCTTTAAAGATTGAAACATAAAAAATAATCAGGAACAATTAATTGATTT
GATTATTGATTGATTTAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTATAACATTTACCGATGTATAATTTACCGCCATATTTTTGCGGAACAC
TTAATTGGCCGGAAATCAAATTACAAACAAAAACGCAAAGATTCGAGATT
CTAGTCCAATATTATGCGTGAAGCTATAAGTGCCTCCTCGTCGCTGCGCT
CCTGCGGGGGCAAAAACTCATTTTTGAAATACTCTTTCTCCAACACAACA
CAAAAAATGTCATATGCTAAAATAGAATATGACTGAAAACTGACAATATA
ATAAAAACAAACCCAATGAAGCTCGCAAAATCAATCTGCTATCACAGAAA
AAATGTTTTTGCTTCGGGCTTGATCAAAAATAAAACTTGAAAATATTGAA
AAAGTCCAAAATAAACAAACTTAAAAGTCATTTATACTTATTACTCATTT
ACAGTCATTATACTCAAAAGCTAAAACAAATCCAATTGAAACCTGTTTAG
ACTGATATGTACCCCGGGGTATTTTCTANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNACAAAAATTAGGAAAGTTTTGCTGTCATTTTGAT
ATGGATACCAACTTTCTGAATCATATTATTTAAAAAAAGGGGTACCCACC
CCCTATTTTGGTATCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTTTTTTTCTAAAAAAGGGGGACCCACC
CCCATCAATACCAACTTGACTTTTCAGACTTTTAAAGGAAAAAAAGACAC
CACCACCCGGCTATGGGTCTGGTATCTGGATGTTGACCCCCCCCCTGGAA
AGGCTCCTTTTTACAAAAATCATCAAAGTTCAACTCTTCACGAAACAGAA
TAAAAAAGCCTGGTTTTTTAAAACTGGGTCCATTTACTACCTATTATATG
GGAACACAAGCCAGTCAAGTAGTTAGAGACTTTCTTTTATAGCCCGAAAA
TCTCCTATACGCAACAAAAGATGAAGAAGCACCATTGAAACTTGCAGATT
TCGGTCTCTCCAAAATGTTGAAACACGATTTGACGATGCAGACTGTCTGC
GGAACGCCTGGTTATTGTGGTATGTCAGGGATTTTTTCAGCACTTTTTAT
GTCCGTATACCGGCCAAAATACTCAATCCAAGGTTGAGTTCTTGAGACTC
AATCCAAAATAGAAAAATTGTTTTCAAGTAAAATTTTACCTTTTTGTTGT
TTACACGAAAAATAACTAATATAATATAACTAATATTTTTAAGAGCTTAG
CCTTCTGAACCCATTTGGGTTTCGCCCTGAACCCACTAGGGGGCTTCAAA
GCCCCCTCAGACCCCCAGCTTCATCAATGATGCCCTTTCAGGTATTAGAA
ACTCAATCTGAATTTACAAAAACAGCCCCACCTCAGACTGCTTAGAAAAA
TCCCTGGTATGTTAGTAATTGAATAAACATCAAATGCATTTTATTTACCC
TTTCCATAAAAGATAGTCCATTTCATTTTTCAAACTGATTGCGCCCCCTA
TAACCGCTTCCCGTTGGTTAGACGTAAAATTTTTTAGATCAACTTGACCA
ATACTTATCTCATTGACCTCAGTTTCATACCTAAATAGTTCTAGACCAAT
AGAAAATCGTTATCAGAGCCCAGTGGTCCTGATTTACCATGATTCCTTTC
GAGCGTGAAATGGCTTATACCGACAATAGGCCGTTTCACAGTCGCAAAGC
GTAACGGGTAATCAGGACCACTGCGCGTTAATGACGACTTAATATTGGTC
ATAAGTTTTAAAAAATTTTGAAGATTATTTCATCTAGCCGTTATGGAGGT
GCAATCAGTCCTGATTACCTATAATTCATTTCGACTGTGAAATGGCTTAT
ACCGACAATAGACATTATTTTTTTCTGGTTAACCCAAACCAACCCCTTGT
GGCGTAAGAGTTCATAGGTTTCTTGAGATATCTTTCCATCATTTCTACTA
GTTTTTACCTAACTTCTTAGGGGCATTGGCGTCGACTTTTATTAATCCTT
CTTCATAAGAAATCATTCTACAGTCCATGCCCCACAAATATGCAGGTGTT
CAACGGTATCTACATTGTTGATGTAGAAGCGAGTATTAATTTCTTTTTAT
CCGAAAAACATCACATTGAGATGATACCTGAACTCTCTTCTTTACAGCAC
CAGAAGTATTACTTGGTAAAAACTATGGACCTGAAGTTGATATGTGGGCT
GTTGGTGTTATCACTTACATCATGTAAGAAAATGGTTTATAATAATAATT
TGAATAAGGTGGCCACAAACAGGAACAGGGTAGGAAGGTTGTACAAAATA
TAAGATATTCCTCTTGTCCGCTCAAAATGAACAGGCGGGTCCAAAAGGTT
TGGAGTGGAAAAAAAATCAAAAAGTAGGGAAGGGGTCTAATTGTTAGGCT
CAAGAGTTAAACAATCTTGTTTATGAGTAGCTAAAACAGGGAATAGCTTT
TTGGGGAAATTGGTCGATTGGGTTGCTCTGTAGCTCTGTAGCTCTGTACT
TTCCAACGCAATGAAGTGCTATATAATATGCTTTCCTGTTGATTGAATGA
ATTTACTACTCTACTATTTTTGTTCCTTGAAATAATATTATGAGCGCTTG
ACATTTTTTTCAATCTAGCGCAATATTCAGCAACGACTTTTGTCGGAAAA
TCATATTCTAAATAAAGAAAGAGCTTTACTTTTAGTTTCTGCCAGAAATT
ATTGATTTCGTCTTATTACGTATTATTTTAAATTTTTAGGTTATGTGGCT
ATGAGCCTTTTTATAGCGATGCTGATGACAACAAAGAAATGTTCCGTAAA
ATTCTGAAATGTGAATTCAAGTTTGATTCGCCATGGTGGGATGAAGTATC
TATCAACGCTAAGGTATTTTCTTATTAAGATTATTTTGTCGAGGGGAGTT
TATTTGGCATTTAACGGAAAATCGAACGAAATTTATTTGGCATTTGGCGT
TTGATTGACAAAAGAAATAAGGAAATTTATTTGATTTTGACAAGAAAAGT
TGAGCGAAATTTGTTTGACGTTTGACAAAAAATTGAGCGAAATTTATTTA
ACGTTTAACAAAAAACTATGGTGAAATCTATTTGACATTTGACAGAAAAC
TTAGCGAAATCTATTTGACGTTTGACAAAAATTTAACGAAATTCATTTGA
CCAAGAAACTTGATTTGACGTTTGACAAAAAATTGAGCGAAATCTATTTG
ACGTTTGACAAAAAATTGAGCGAAATCTATTTGACCAAGAAGCTTGATTT
GACGTTTGACAACAAATTTAGCAAAATCTATTGGACGTTTGACAAAAAAT
TACCGAAATCTATTTGACCAAGGAACTTGATTTGACGTTTGACAAAAAAT
TTAGCGAAATCTATTTGACCAAAGGAACTTGATTTGACGTTTGCCAAAAA
ATTTAGTGAAATCTATTTGACGTTTGACAAAAATTTAACGAAATCTATTT
GACGTTTGATAAAAAATTTAACGAAATCTATTTGACCAAGAAGCTTGATT
TGACGTTTGACAAAAAATTTAGCGAAATCTATTACGAAATCTATTTGACC
AAAGGAACTTGATTTGACGTTTGCCAAAAAATTTAGCGAAATCTATTTGA
CGTTTGACAAAAAAATTGAGCGAAATCTATTTGAAGTTTGACAGAAAAAT
TGAATGAAATCTACCTGACGTTTGACAAAAAATTTAGCGAAATCTATTTG
GCGATTGACAAAACGAGGAAATTTACTCGACATTTAAAAAAATTATGATA
AACAGTCGAAGCTCTTATGACAAAACCACTTGAAAAGAGATATAGTTGTT
CCCTGGGCCATTAGGACAAAATTTAAAGAGAGCGAATCTCGAAATTTTGG
AGCTCGCTCTCTTGTTAAATAAATTTTTAGGATACATTTACATATTATAC
ACCGTTGGAAAGGAAATTGTATTATGAGCTAACTTCTTGCTTACACACCG
TCACTTTCTTTTCACGACTTCGTGTATCCAAACAAAAAGTTCACAGTATG
CAATAGCGATTTTATGTATCTATGTTTTCTGCGACTGAGATGATAGGCTT
CAGACGACGGTAAATCAGCACTTTTACCCTCCTCCGTTTTGCCCGGGTTG
CTCCAAATCGCTTCAGTCACTCCGCCGTCCAAAGTGCAAATGCATAAATT
ACTCATACGCCTATGTTCGACAATGAAAGTTTTAAAAACTGACGTCATAT
CAAAATGAAAAATGCATAGTGAGGGTGGGCTTCCTTAAAAATTTCGTTCA
AGTCAGGTAAGGAGCGACACCGCCAAATTTCAGACTTCTATTTGAAGTGT
CCTTATGATTTTTTTGTCACAAGAGCTCTGTAAAGATCGAGGGAAATTTC
TTTGACGAAAAATATTTTAAAAACTCAAGTTAAAAAGGTTAAACCTTGTT
TACATACCTTTTTTGGGGGGTTAGTGTGATGTCTCCTCCCCTCCTTTTGT
TAAATCTTGAAAATCTCAGTAAAGCTATGCATGAGATACATTTATATATG
ATTATGATCCACTGACTTGTTCACTTTGAATTTATATTTTAGAATTTGGT
TTTCTTTTCAGGATTTGGTAATGAGATTGATCGTATTGGAACCTGAAAAA
CGATTGACTGCAAAACAAGCACTTGAGCATCCCTGGGTACAAGTAAGTAA
CCCCTGTCTCACAACTCTGGTGGTAATTTTTCCCACATGAAAATTTTTAT
TAAAATACCAAATAGGGATAGAAATTCTATTGTTCCCAGCTCAAAATGTT
CTCATCCTGATCTTATTTCTAGGGCAAAACTAAAGTATTTTAGGTTTCCG
ACCAAATTCTATTAAATTTGACCTTTTACTGGCTTAATATTCGTTTATAT
ATTTATGCATTTTTGAGCCTCGTTGTTATCATAAATTGTTTCTTATGAAA
AAGGTTACACCCAAGATTCTTTTGCCAGGTAGCAAGTTCAACTTTTCAAG
TTGAGGAAATGATACAAATACACTCTCTAAATATTCATGTTTCTACTTTG
GAGCTATTAGACTTGGATGATCTCTTGAACGTACAAGAAATGTATACACT
TTTTTATATAAGAACAATTTTATAAAAACAATGACGCTCAAAATTGCCAA
AAAATGAGAACAATTTAAGAACAATGTTGAGCCTGAATTTACTCAATTTC
AAGTAATTTAGGGGTTAAAGTAGTAAAACTTGGGTATAACACCTGAAATA
CCTAAATCACATCCTATAAATAAGAACAGGATAAAAACAATTTGAGGCTC
AAAGTGCCAGAAAAATAAGAACAGCCGAGCCTCAGAAAAATTTACTGGTT
CTTATAAACAAAAAGTATATTTATGTTCTGTTACAACTTCTCTCAATTTT
CTTTGCTTTTTCACACGTCCAGGGAAAAGGTGCTAACATACTACACATGG
AGAATGCGCAAGTGAAACTTCGAGAGTTCAACGCAAGACGGAAACTGAAG
GGTGGAGCACACGCCGTTATTGCTGTCAATGAGCTGATCAAAAAATTTAA
AGTTAACAAATAAAAAAGTATNGGCACACGCCGTCATTGCTGTCAATGAG
CTGATCAAAAAATTTAAAGTTAACAAATAAAAAAGTATGAAGTTGGGTTC
TATTCATTAAAAACCAAAAGGATAGAAAAAATTTAAAACATTGACGAAAT
TTATGTGCGACGAGATCTTGTCGGTGAATTCTTTTTGTATTTTTGAGAAT
TCTGGGAAATCTTAAATGGTATTATGTTGTGATATATGAGAGGGTCGTCG
ACGAGAGAAATTTTCGTTTCAAAGCAATCATGGCAAGTATAAATACATGT
TCCTCGATAGACAGAAAAACTATTTTGGATGGTGAAAACCTGAATCTATA
CAATTTCATTTTGTTGCCTTCGTCGTTTGAGGCTTTGGGGAGGAAAAAGC
TGTCTCCGTCAATATGAAAACAGTAATTTCTACAACGTTGTTATTCCTTT
ATATGACTATTGGCATTCAGCCATACAACGTTCCTTGGTTGTCTATATTT
TTTGCATTCTGCTTATTTATTTGTATTGGGTATTTTTAGATGCTAGAATT
TCGAACACGTAATCAATAATGGAATAACAGAGATAGAGATACGTAGTATT
GGGCCGTACACATAGTACGTACGTACTAAGGGGAGGAGGGCGAGTCTTCT
CAAAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035537XLOC_035537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056391-exon-scaffold_275-1575043694:83986..84094TCONS_00056391-exon-scaffold_275-1575043694:83986..84094Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:79405..79483TCONS_00056391-exon-scaffold_275-1575043694:79405..79483Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:78846..78908TCONS_00056391-exon-scaffold_275-1575043694:78846..78908Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:78494..78576TCONS_00056391-exon-scaffold_275-1575043694:78494..78576Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:77108..77180TCONS_00056391-exon-scaffold_275-1575043694:77108..77180Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:76790..76828TCONS_00056391-exon-scaffold_275-1575043694:76790..76828Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:74076..74202TCONS_00056391-exon-scaffold_275-1575043694:74076..74202Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:72922..72997TCONS_00056391-exon-scaffold_275-1575043694:72922..72997Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:72282..72405TCONS_00056391-exon-scaffold_275-1575043694:72282..72405Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:70503..70583TCONS_00056391-exon-scaffold_275-1575043694:70503..70583Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1575043694:68987..69772TCONS_00056391-exon-scaffold_275-1575043694:68987..69772Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:83986..84094TCONS_00056391-exon-scaffold_275-1510915933:83986..84094Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:79405..79483TCONS_00056391-exon-scaffold_275-1510915933:79405..79483Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:78846..78908TCONS_00056391-exon-scaffold_275-1510915933:78846..78908Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:78494..78576TCONS_00056391-exon-scaffold_275-1510915933:78494..78576Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:77108..77180TCONS_00056391-exon-scaffold_275-1510915933:77108..77180Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:76790..76828TCONS_00056391-exon-scaffold_275-1510915933:76790..76828Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:74076..74202TCONS_00056391-exon-scaffold_275-1510915933:74076..74202Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:72922..72997TCONS_00056391-exon-scaffold_275-1510915933:72922..72997Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:72282..72405TCONS_00056391-exon-scaffold_275-1510915933:72282..72405Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:70503..70583TCONS_00056391-exon-scaffold_275-1510915933:70503..70583Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1510915933:68987..69772TCONS_00056391-exon-scaffold_275-1510915933:68987..69772Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:83986..84094TCONS_00056391-exon-scaffold_275-1491911889:83986..84094Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:79405..79483TCONS_00056391-exon-scaffold_275-1491911889:79405..79483Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:78846..78908TCONS_00056391-exon-scaffold_275-1491911889:78846..78908Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:78494..78576TCONS_00056391-exon-scaffold_275-1491911889:78494..78576Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:77108..77180TCONS_00056391-exon-scaffold_275-1491911889:77108..77180Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:76790..76828TCONS_00056391-exon-scaffold_275-1491911889:76790..76828Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:74076..74202TCONS_00056391-exon-scaffold_275-1491911889:74076..74202Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:72922..72997TCONS_00056391-exon-scaffold_275-1491911889:72922..72997Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:72282..72405TCONS_00056391-exon-scaffold_275-1491911889:72282..72405Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:70503..70583TCONS_00056391-exon-scaffold_275-1491911889:70503..70583Clytia hemisphaericaexon
TCONS_00056391-exon-scaffold_275-1491911889:68987..69772TCONS_00056391-exon-scaffold_275-1491911889:68987..69772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_275supercontigscaffold_275:68987..84094 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.89348	4.30798	3.07814	3.01148	237.138	146.961	194.265	195.593	99.2069	96.1969	74.8483	67.6409	25.2224	22.72	28.2885	30.7355	20.1023	22.696	16.0391	21.1687	25.1022	27.597	18.0791	19.483	12.8214	22.6635	30.5675	29.0419	24.8938	29.3595
Blast
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BLAST of TCONS_00056391 vs. Swiss-Prot (Human)
Match: KCC4 (Calcium/calmodulin-dependent protein kinase type IV OS=Homo sapiens GN=CAMK4 PE=1 SV=1)

HSP 1 Score: 411.379 bits (1056), Expect = 1.422e-137
Identity = 199/305 (65.25%), Postives = 249/305 (81.64%), Query Frame = 3 
Query:   42 YLFSVSRKEDVNEFFDTKDLLGRGATSEVYKVIQKGTKNEYAMXXXXXXXXXXXXXTEIGILLRLKHTNIIRLKEIFESETHLFLILEYVSGGELFDRIVDKGFYSEQDAARCVNQICQAIDYLHENDIVHRDLKPENLLYATKDEEAPLKLADFGLSKMLKHDLTMQTVCGTPGYCAPEVLLGKNYGPEVDMWAVGVITYIMLCGYEPFYSDADDNKEMFRKILKCEFKFDSPWWDEVSINAKDLVMRLIVLEPEKRLTAKQALEHPWVQGKGANILHMENAQVKLREFNARRKLKGGAHAVIA 956
            Y    S ++ +++FF+ +  LGRGATS VY+  QKGT+  YA+K +KK +DKKI++TEIG+LLRL H NII+LKEIFE+ T + L+LE V+GGELFDRIV+KG+YSE+DAA  V QI +A+ YLHEN IVHRDLKPENLLYAT   +APLK+ADFGLSK+++H + M+TVCGTPGYCAPE+L G  YGPEVDMW+VG+ITYI+LCG+EPFY +  D + MFR+IL CE+ F SPWWDEVS+NAKDLV +LIVL+P+KRLT  QAL+HPWV GK AN +HM+ AQ KL+EFNARRKLK    AV+A
Sbjct:   32 YWIDGSNRDALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD-QFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKAANFVHMDTAQKKLQEFNARRKLKAAVKAVVA 335
The following BLAST results are available for this feature:
BLAST of TCONS_00056391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCC41.422e-13765.25Calcium/calmodulin-dependent protein kinase type I... [more]
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