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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056386 ID=TCONS_00056386|Name=TCONS_00056386|organism=Clytia hemisphaerica|type=transcript|length=359bp
TGATCAAAATGCATCTATCCAGTATGGACAAGGGTACTTACAAGTGTAAC
ACAGTTCGATCTGGTAATCCTAAAGCACTTGGCGACATCAAACAACGATA
TGAGCAAATCAAAGAATTTTTTATAATGCAGCTAGAAGCTCTGGTTGTAA
GTGCTTTCATGAAGCAAGAAAACATGGAAAGTGTGAATGATGATTGTATA
CCTGAACACATACAAGATGCTAATGCCAAGAAACGTTGGCTCAATGGTCG
AATCTCGATGATGTTGGAAACATACGTAATACCACATTTCAGAACATTGA
TAGGCTCAATTAAGAAGGAAGGAGATGTTGACGAAAATGATGAAACTATA
AACCAAGCA Run BLAST on NCBI protein sequence of TCONS_00056386-protein >TCONS_00056386-protein ID=TCONS_00056386-protein|Name=TCONS_00056386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
IKMHLSSMDKGTYKCNTVRSGNPKALGDIKQRYEQIKEFFIMQLEALVVS
AFMKQENMESVNDDCIPEHIQDANAKKRWLNGRISMMLETYVIPHFRTLI
GSIKKEGDVDENDETINQA Run BLAST on NCBI transcript from alignment at scaffold_275:28018..28901+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056386 ID=TCONS_00056386|Name=TCONS_00056386|organism=Clytia hemisphaerica|type=transcript|length=884bp|location=Sequence derived from alignment at scaffold_275:28018..28901+ (Clytia hemisphaerica)
TGATCAAAATGCATCTATCCAGTATGGACAAGGGTACTTACAAGTGTAAC
ACAGTTCGATCTGGTAATCCTAAAGCACTTGGCGACATCAAACAACGATA
TGAGCAAATCAAAGAATTTTTTATAATGCAGCTAGAAGCTCTGGTTGTAA
GTGCTTTCATGAAGCAAGAAAACATGGAAAGTGTGAATGATGATTGTATA
CCTGAACACATACAAGATGCTAATGCCAAGAAACGTTGGCTCAATGGTCG
AATCTCGATGATGTTGGAAACATACGTAATACCACATTTCAGGTAAGCtt
gtaatatttcttttctttttatatacaaGGAAATTTTACAGGTGTAAATA
ATATTCAAAGATTTAACAAACATCTCTTGAGCCTTTAGGAGATAAATTTG
CACACTAAATAAAAGTGAATTACACATTTTTGTCTTTATGCAACCAAATT
GCTAAGGCTCCAGCcctgaaaatggccaaaaaattaagcaaTTTGGCTTA
GCAACCACATCCCTGTAACTGAGTGTTAGCTGAAAATCAGGtattttttt
gcataatttggCATCAATATGTCTAACAAAGACATTTTGTTAGCTAACTT
TTCGTATTTTGTGCATAAAGTGAGGTAAAAAGTCAAAACTTTAGGGGTTG
CGTAGCAATTTTAGTTCAAAATTCATTGGCAATTTTTAGGCTGAAATCTT
AACAATCCTTAGCAATTCTAGCCCTGAGCTAAAAATTAGAGTTTCCCATA
AAGAAATTGTGTAGATAGTCATTGGTTAAATTTGCAATACATAgcattat
ttcaattttcattataGAACATTGATAGGCTCAATTAAGAAGGAAGGAGA
TGTTGACGAAAATGATGAAACTATAAACCAAGCA Coding sequence (CDS) from alignment at scaffold_275:28018..28901+ >TCONS_00056386 ID=TCONS_00056386|Name=TCONS_00056386|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_275:28018..28901+ (Clytia hemisphaerica)
ATCAAAATGCATCTATCCAGTATGGACAAGGGTACTTACAAGTGTAACAC
AGTTCGATCTGGTAATCCTAAAGCACTTGGCGACATCAAACAACGATATG
AGCAAATCAAAGAATTTTTTATAATGCAGCTAGAAGCTCTGGTTGTAAGT
GCTTTCATGAAGCAAGAAAACATGGAAAGTGTGAATGATGATTGTATACC
TGAACACATACAAGATGCTAATGCCAAGAAACGTTGGCTCAATGGTCGAA
TCTCGATGATGTTGGAAACATACGTAATACCACATTTCAGAACATTGATA
GGCTCAATTAAGAAGGAAGGAGATGTTGACGAAAATGATGAAACTATAAA
CCAAGCAATCAAAATGCATCTATCCAGTATGGACAAGGGTACTTACAAGT
GTAACACAGTTCGATCTGGTAATCCTAAAGCACTTGGCGACATCAAACAA
CGATATGAGCAAATCAAAGAATTTTTTATAATGCAGCTAGAAGCTCTGGT
TGTAAGTGCTTTCATGAAGCAAGAAAACATGGAAAGTGTGAATGATGATT
GTATACCTGAACACATACAAGATGCTAATGCCAAGAAACGTTGGCTCAAT
GGTCGAATCTCGATGATGTTGGAAACATACGTAATACCACATTTCAGAAC
ATTGATAGGCTCAATTAAGAAGGAAGGAGATGTTGACGAAAATGATGAAA
CTATAAACCAAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056386-exon-scaffold_275-1491911889:28018..28309 | TCONS_00056386-exon-scaffold_275-1491911889:28018..28309 | Clytia hemisphaerica | exon |
| TCONS_00056386-exon-scaffold_275-1510915933:28018..28309 | TCONS_00056386-exon-scaffold_275-1510915933:28018..28309 | Clytia hemisphaerica | exon |
| TCONS_00056386-exon-scaffold_275-1575043694:28018..28309 | TCONS_00056386-exon-scaffold_275-1575043694:28018..28309 | Clytia hemisphaerica | exon |
| TCONS_00056386-exon-scaffold_275-1491911889:28835..28901 | TCONS_00056386-exon-scaffold_275-1491911889:28835..28901 | Clytia hemisphaerica | exon |
| TCONS_00056386-exon-scaffold_275-1510915933:28835..28901 | TCONS_00056386-exon-scaffold_275-1510915933:28835..28901 | Clytia hemisphaerica | exon |
| TCONS_00056386-exon-scaffold_275-1575043694:28835..28901 | TCONS_00056386-exon-scaffold_275-1575043694:28835..28901 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_275 | supercontig | scaffold_275:28018..28901 + |
Blast
The following BLAST results are available for this feature:
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