TCONS_00056359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056359
Unique NameTCONS_00056359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056359 ID=TCONS_00056359|Name=TCONS_00056359|organism=Clytia hemisphaerica|type=transcript|length=3162bp
AACGATTTAAGGGATTGAGAAATCGTATGTTTTAAAATTTGCGgatgatt
taaaatttttggtatATAGTTATTGTTGTCAGCGAGGTGTGAGTGAGTGT
ACCAATTTATTTGATATTTAATTGTGAACGAATGGACAAAATAACTTATG
TTTGATACTGTGATGTGGTGGTTGCTGGCAGAAGTTAAAACACATAATAC
TGTGAAAGAAATGAAAGCGACGATTTTTTTCATACAATTGATCGTTTGTT
GCTTCTAGTGTGGTTTATTGGTAGAAGACGTTTTGCCATCTGGACagcaa
taaatattttcttttttctcgttttagtgaaataaataaaaattgaaaaa
cataaaactcgataattgaaaataaaaacaaatttaaaatggGTCCCACA
ATGATACCATTGTTAAAAGAGAAAGTTGATGAATTATTTCTTCACTGGTT
CAGCGAGGTTGAAACACAACAAAATTTACGGAAAGAACTTTCAAACATCC
TTGGAACACACGATGAAATCGTCCCCATCTCAACACCATTTCTAACTTCA
TCGCCCCATGGCGGACAAACGACGCTCATATCCCGCCCCAGTTCTCCGCC
CATACCACCGGGTAGTCCCACTACACCACGTAGTCCTAGACGGCGTACCG
GCTCCGACTTATCACGAAAAGGATCACGTAAAAATCCGCGTAGGCGTACG
CAAGAAGAACAGAAACCGGCCCTTTACCCCGGATGTGCGGAaaaattgaa
acctttttatttTCCGTTCGGAGAACCAAGAACGTTAGAAAATGAGGGAA
ATACTGTGAATAGCATAACGACGTATTTTGATCGACTGAAAAATCAAACG
GCCACAATGGACGACTTTCCACAACTTATGAAGATCTGCGGGGCACCGCT
GTACTGGAAATACCCATACTTCTTAGCGTGCGGTGGCAACAAAAGCAATA
CAATTACTTGTAAGAAATTCATCGCAACTTGGAAACATGTCAACACGAAA
TACCACGACGAAGCATCTCGTTTCTTCCACTTACTATCCAAAGATTCACA
AAAACATCTCACGTATGACGATTTCGAAGGCTTACTACAGGACATTATCA
ACACGCACCCTGGTTTGAAGTTCTTACTAGACGCCCCTGAATTTCACTCA
CGCTACATCATTACGGTTGTGGCTAGGATATTCTACACAATCAACCGATC
TTGGAACGGAAAACTCTCCTTAACCGAACTAAGGCGGAGTAATTTCTTAA
CGGTTTTGAAAACTTTAGAAGAGGAAGAAGATATCAACCAAGTTGTGGAT
TTCTTCTCGTACGAACATTTTTACGTCATCTATTGCAAATTCTGGGAATT
GGACACCGACCATGATATGGTTATCAGTAAAGATGATTTGTCCAGATACT
CCAATGGAGCGGTTTCATTACGAATGATCGATCGATTATTCTCTGGCTGT
GTAACCAGAGATCAAAGTTTGAAAGAAGGCAAAATGTTATACGTAGATTT
TATTTGGTTCATCTTATCCGAAGTTGATAAAGCCTCACCAACTGGAATGG
AGTACTGGTTTCGTTGCATGGACATGGACGGTGACGGTGTGATCAGTATG
TACGAACTACAATATTTCTACGAAGATCAACTGCAAAAGATGATCGAACT
TGGCATGGAAACTCTCTCATTCCAAGACTGCTTATGTCAGATGTTGGATT
TAGTGAAACCTTCACATCCTTACCAAGTGACGTTGAGAGATTTAAAGAAG
TGTAAACTAGCGCCTGTTTTCTTTGATACATTTTTCAACCTGGAGAAATG
GCTTGAACATGAACAAAAAGATCCTTTTCAAGCTTCTAGAAACGAGAACG
GAGAACCGGAAGTGAGCGCATGGGAAAGATACGTAGGAGAAGAATATGAA
TTGCTCGTCGCCGAAGAAGGAGCATCTCAAATCAACCAAGAAATTGATTA
CGAAGATGATTTTGATGATGAAGAAATGTTAACGTACGAAGAATCACTTG
CTAAACATTCTTCACTCGACCCTTCTCTTTCCAACGGTTGGTCTGCGCTC
AATGCTGTCAGTTGATCACCACTAAAGACAGAAATGAGATTTGGTCGGGT
GAGAAAAATTAAGACCTGGGCGAAGGCTACAGAAGAAAGATCGAAGATGC
AATCTCCTTGAGATTAACAACAAGATTAACAAGATTTATCATTGCACCTA
CAAGATCAGTTGCAAGGATGCAGTTAATTTGACTGTCGAATTATCGTGCC
AGAGGTGACAACGtcaaaagaatttcaagtgCTATTTTGTCTCCAAAGAT
TTTTACGGACACTGCAATGATGATTTTTATTGGAtgcgtttgttttggtt
tgtagTGTTTCCAGCAAACACTCGAAGAGCTGGACTCTAATACTAACTGA
TTTCCATTGGCTGACTTCACATCCGCTTTTACTTAATGGCTCAAAATATG
TCTCTAAGAAAGACGCACGATGCAAGACTTCAAGACATACGCTACCTAGA
TATTCCGACCTTATTGGACTAAAGCCATCCTTTTGAAGGACCAAAATAGT
ACCATTCAGTCTTCTTTGACTATAAAAGGACATATAAACAATTTTACGGT
TTGGATTTCTTTTCAAGAGCCTCTCCACATATTTTGATGCGTAGGTGTCA
AAAGACTGGTCACATTTTACTGCTTTACACTATATTTTTCTTGATAGGAT
GCTCTTGAACGAATAAACAAACAATTCCTTACTTCTCAACCCTTATACAG
CGTGTTTGTAGTACAATTGTGTTATGCTGTAACATATGTGTAATACAATT
ACCGACGTTTATAACTCGAACTTTATTACTAAGTTCCGTGTTGCTATAAG
CATTCTGTATAATGATTCTTTTAATGCGCCTTGTTTTAAAGGTCATATTT
TATGAGGATATTTCAATATCTGTATTTTTCCtagatatttgaaaaattag
atttgttaataatttctttatgaTACTTGCAGCGTGTCTGGTTGGTTGGT
CGAATCAAGCACCTCACAAGCTTATATTTATGAACTTTAAATGAACCAGA
CCTTTTACCAGACACTCTGCGTTACAACAAATTAGACTCAACAGTATAGA
TATGAAAGTTCTTGTAAAATGTAATAACAAAATACtttgtaaatttgaaa
atatttcgaaag
Run BLAST on NCBI

transcript from alignment at scaffold_273:96075..107510-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056359 ID=TCONS_00056359|Name=TCONS_00056359|organism=Clytia hemisphaerica|type=transcript|length=11436bp|location=Sequence derived from alignment at scaffold_273:96075..107510- (Clytia hemisphaerica)
AACGATTTAAGGGATTGAGAAATCGTATGTTTTAAAATTTGCGGATGATT
TAAAATTTTTGGTATATAGTTATTGTTGTCAGCGAGGTGTGAGTGAGTGT
ACCAATTTATTTGATATTTAATTGTGAACGAATGGACAAAATAACTTATG
TTTGATACTGTGATGTGGTGGTTGCTGGCAGAAGTTAAAACACATAATAC
TGTGAAAGAAATGAAAGCGACGATTTTTTTCATACAATTGATCGTTTGTT
GCTTCTAGTGTGGTTTATTGGTAGAAGACGTTTTGCCATCTGGACAGCAA
TAAATATTTTCTTTTTTCTCGTTTTAGTGAAATAAATAAAAATTGAAAAA
CATAAAACTCGATAATTGAAAATAAAAACAAATTTAAAATGGGTCCCACA
ATGATACCATTGTTAAAAGAGAAAGTTGATGAATTATTTCTTCACTGGTT
CAGCGAGGTTGAAACACAACAAAATTTACGGAAAGAACTTTCAAACATCC
TTGGAACACACGATGAAATCGTCCCCATCTCAACACCATTTCTAACTTCA
TCGCCCCATGGCGGACAAACGACGCTCATATCCCGCCCCAGTTCTCCGCC
CATACCACCGGGTAGTCCCACTACACCACGTAGTCCTAGACGGCGTACCG
GCTCCGACTTATCACGAAAAGGATCACGTAAAAATCCGCGTAGGCGTACG
CAAGAAGAACAGAAACCGGCCCTTTACCCCGGATGTGCGGAAAAATTGAA
ACCTTTTTATTTTCCGTTCGGAGAACCAAGAACGTTAGAAAATGAGGGAA
ATACTGTGAATAGCATAACGACGTATTTTGATCGACTGAAAAATCAAACG
GCCACAATGGACGACTTTCCACAACTTATGAAGGTTCGAAAATTTGCTGT
GTCAATGCTGAAGAACGGGCTAAAAATTCAGTTTCTTCAGCTGGAAAGTA
GTAACTTCCCTTTAATTTGAATGTTTCTTTAGTTCAAAAAATGGTCTTTT
TCTTGAGAGTCGATTTAGAGAGAGTCAACTTAGAGAGAGTCAACTTAGAG
AGAGTCAACTTAGAGAGAGTCAACTTAATGAAGCAATGAGATCATCTGAG
GGATATCAACTTTTCAAATAGTTTTACCCAAGTATTTTTAAGATTCGACT
TCTTTCTTATTTTAGATCTGCGGGGCACCGCTGTACTGGAAATACCCATA
CTTCTTAGCGTGCGGTGGCAACAAAAGCAATACAATTACTTGTAAGAAAT
TCATCGCAACTTGGAAACAGTATGTACTTTAATTTCTTTTTGATTATTTT
TATTTGGCTCTATTATTGCCTGGCCTTGCTTTAGTAATATCCGAAAACTG
TTTATTTTGTCGATTAACGTCACAACGACGTTATCTTTCATTCTCTTTGA
CTAATTTGTTGTTAATAGTGACTAAAAATAGAAGTCTTAAAGTGCTTCTT
AATTCTCGCTAATTAGGCCGGTAGGCATTTCCACATAATGATGCAAAATT
AATTATACTCAATTTAGCGTAGTGTAGGTGTGTATTGAGTAACAGAAAGA
ATTTTATGGTACTTTATTTTTAAATTTCAACAATGCTAAATATAGCAAGT
CTTTAACTTCAACACAGCAATTCAAAAACAACAAATTTGCTAGTGCTTCA
TGGTAGGCTTCAAGATTTTCCTTTTGTCTTATCGTTACTGTCAATTTCCT
CGCCTTGTTTCCATGTAGTGTCAACACGAAATACCACGACGAAGCATCTC
GTTTCTTCCACTTACTATCCAAAGATTCACAAAAACATCTCACGTATGAC
GATTTCGAAGGCTTACTACAGGTAAAATGCTTTTCATTTGTCATTTTAAG
GAATAGGAAATATTTTTTTTCAAATTTCTGCAGTAAATCAAAATTTCGCA
CAATGATTTGTTTAAAATGCCCCTGCCTTAATTTATATTTCATTTTCAAA
AACACAGACATTATGAACTACACTCTAGACGTTCTAGACGAGTCATCGAT
TTTAGCGTTAGTGTTAGTCAAACTATAATCTTTTGATATTTTGGTTTGTT
TAACGATCAATTACGAATCAGCTCATAATCTTTTTATCGAAATTTTTAAC
ACTATGTCATTTTTGATAAAGTTTTGACGAAAGACGAAAGTTATGCTTTC
ATAAAATCATGACGTGATATGTACTAAAATCAACATTGAAAATAAGCTTT
TGCAACCTCGAAAGCTTTGTTGAACCTTTGTTGAGTTCTCAAAACAGCCC
TACATAAAGGGAGGGTACGGCCCTGTTATTTTTGTATATCTATTTACCTT
TCCAAATCTCGTCATGACTTTGGTATTTTACCACCCTATATAAACAGTAA
CAGGATGACGTTGAAAGTTGTATACATCATTGAAACCCAATCCCCCCAAA
TCTAAAGATAGATGATTTGAAAACCACTGCGGTTTTTACTTATAACTTTG
GCATTTTATTTTGTGTTTTGTGCCCTAAATATTCTCTTTTTGTCTCTCTC
CGGTATCTCCTCTTAAAATCAAGCTAGAGGTTAAGGTTTTACACTCGAGT
CCTATATTCTAGTACTTTTCGTCTGATCATGAACATATAAACGACTGGAC
ATCCATCTCCTTTGTATTTTTGAAGATAACACTGCTAGCTTCGTTGCCGC
CTCGTTAAAATCATCNTTATTTGGCTCTATTATTGCCTGGCCTTGCTTTA
GTAATATCCGAAAACTGTTTATTTTGTCGATTAACGTCACAACGACGTTA
TCTTTCATTCTCTTTGACTAATTTGTTGTTAATAGTGACTAAAAATAGAA
GTCTTAAAGTGCTTCTTAATTCTCGCTAATTAGGCCGGTAGGCATTTCCA
CATAATGATGCAAAATTAATTATACTCAATTTAGCGTAGTGTAGGTGTGT
ATTGAGTAACAGAAAGAATTTTATGGTACTTTATTTTTAAATTTCAACAA
TGCTAAATATAGCAAGTCTTTAACTTCAACACAGCAATTCAAAAACAACA
AATTTGCTAGTGCTTCATGGTAGGCTTCAAGATTTTCCTTTTGTCTTATC
GTTACTGTCAATTTCCTCGCCTTGTTTCCATGTAGTGTCAACACGAAATA
CCACGACGAAGCATCTCGTTTCTTCCACTTACTATCCAAAGATTCACAAA
AACATCTCACGTATGACGATTTCGAAGGCTTACTACAGGTAAAATGCTTT
TCATTTGTCATTTTAAGGAATAGGAAATATTTTTTTTCAAATTTCTGCAG
TAAATCAAAATTTCGCACAATGATTTGTTTAAAATGCCCCTGCCTTAATT
TATATTTCATTTTCAAAAACACAGACATTATGAACTACACTCTAGACGTT
CTAGACGAGTCATCGATTTTAGCGTTAGTGTTAGTCAAACTATAATCTTT
TGATATTTTGGTTTGTTTAACGATCAATTACGAATCAGCTCATAATCTTT
TTATCGAAATTTTTAACACTATGTCATTTTTGATAAAGTTTTGACGAAAG
ACGAAAGTTATGCTTTCATAAAATCATGACGTGATATGTACTAAAATCAA
CATTGAAAATAAGCTTTTGCAACCTCGAAAGCTTTGTTGAACCTTTGTTG
AGTTCTCAAAACAGCCCTACATAAAGGGAGGGTACGGCCCTGTTATTTTT
GTATATCTATTTACCTTTCCAAATCTCGTCATGACTTTGGTATTTTACCA
CCCTATATAAACAGTAACAGGATGACGTTGAAAGTTGTATACATCATTGA
AACCCAATCCCCCCAAATCTAAAGATAGATGATTTGAAAACCACTGCGGT
TTTTACTTATAACTTTGGCATTTTATTTTGTGTTTTGTGNGATTCAAAAG
TATACACGCAGTTGAAATTCTGCATTTCAGAGTTGAAAATGTTGATGAAA
TATATTGCAAACCCGTGAAAAAATTTGGAAATAATTTTTTTGTGCATTAG
GAGTAATGTTCAAGCTCTATCAATCATTTTACCTAAACAATTCAAAGAAA
TAAAATTACGACGGAATATTGTCGGGTTTTTTATAGCAGTTTTGAAATAC
AGGCGGCAACGAAGCTCGCTTCAAAGAGACAATAAAAGATAGATGTCCAG
TCGTTTATATGTTCATGGTCTGATGGAACATTTTATGAAGAGCCCTCTAT
ATGTAATTATCACATTATTACATTGCTTCCTCTGCCTTTATTTAAGCGTA
AAACACCTTGAATCCACAATACATCGATAACCCTTAAAATAGTTCTTCTC
TATATTTAAACCAATTAACCGAAATTAGAACGAGAAAAAAAGCTGTGGTT
TTTAGTCCGATCTCTTACAAAGTGGTATCGATATTTGTTCGGGTTACAAA
ACACCCTTTTCTTTATCTATTTACATCATACGTAATATTAGGCAGTTGCT
AAACTCGTTGATGTGAAAGATAAGCATAGTTGCCCTTTGGACTTATTTTG
CTCGTAAATTAACATATTTGTGGTCAACTCGGGCGCATGAAAAAAATTTA
AAAAGTGTCAAATCCCGTTTCGGTCCTTGACTTAAAAATTACATTTGAGA
TGACTTTTATTTCTTTTCAAATTTGTAGGACATTATCAACACGCACCCTG
GTTTGAAGTTCTTACTAGACGCCCCTGAATTTCACTCACGCTACATCATT
ACGGTAAGATAAAGAATAGATGTCTTAAATACACGGGGTTTTTTTATAAG
AACATCCGAAACTTTTGAAGCCTTCGGGTGTTATTAACTTTTTGAGTTTT
AAGCCTATAATAATGATCTTAAAATATTCATTTTTCACCATTTTGTGAGC
ATTCTTTGGGCATTTTTTCTAAGAAATTATGACTCTGCAAAAATGTTCTT
AACCTGTTCTTAATATTTTGACCATCGAAAGCTTATGTTCTGGTATAGTT
TGTTCTTATGTAAAAACATGTATTTCGATAAGCTCTCTGATCGAACGCCC
CTTTTAATGAAGTGTCTTGATAATCCATTAATGATGCCGCGTGCTTGAGT
ATGCCTACTATTAAAAATGAATTTCATTCAGTGCCTCTCAGTCTGTATAA
ACAATTAAGTCGCATGAATCCTGATTTGCAATTATAGGCCGAGAGATCTT
AAGATTTCTTCGGTCCATGTAATGGAATGCCATTTGTAAAGAAATTATTT
TCGTGGTAGGAAGCCATCCATTGGCAAACAATCGCATTATATTTCTCTTG
TTTATTTACACGTCCTCAAACGAGATGCCTTGGTAATCAATTGACTTTTG
GTTATCGCTCTTTAAATTCTTTAGCTTTTAGTAGTATGCCATTCATCTCA
ACAAATCTTAGCAGGATAAACATGCTCAAATCCTCCCACGCATGGCTTTT
ATACATTCAAAAAATGAAGGATATTTAGTATTTAAATCTCCTGTTTTGAT
CATAAAAAAGCCGATTCCCTTCAAAATGTTGGTGCTTTTTACCTTAAATG
GTAATTTTCTTGAGATAATTCCTACTACCTGCTTGTGTTAATTCGCTTTC
AGTGTTTTCCCTAAATCTAATTCAGATGAAACTTTTAAATTCTCCTTAAT
TTTCTTAACCGTGAAGTTTTGCTGAAGCGTGGTTAAGAAAAAACCTTTTT
CTTAAGCTTAATTTATCGAATACAATTATTTTATGCACTCAAAATAAAGC
CATATACCCGCCGAAAAGATTTGAAACTATAACCGGGTTATTTCCGTCTT
TTAATCTTTCTGATCTGCTAATAGGAAATTGATGAGCTTGTACCTGATTT
CCCTGTTTTCAATGAAGGAAACCGTTACCGTTAAGTGTTTTGAACGAAAA
CTTCCTGATATCATAACAGTTTTATATTTTTGCATGATTTTTTCGGATGC
GACTTTTAGCTCTTGGTGACCCTTCTCTGTCAGAATTCTATCAGTTTTTC
CTCGTTTCCCCTAGCCTGATTAATCAAGCCAGATATTACAGCGCGCGATA
TACTGTATAAAGATGTATATCTTTTTTGGTGCTTTAATGATTTTTTTATA
TCCGTGAAATTTAAGTTAGCGCTGAATAACAGTATTTCAGTCACAACTTA
ACTTTCATATTTTATAGCAAGTGACTGAAAACTGGCTTAGATATCTAGGC
TAGGTTTCCCCATCCTGTGAAACCCGTACTGTCATTCAGTAATTTGGACT
TCTCCATAAAAGTCTTCTGACTTGATTTTCAATGTACTTTATCAAACGAA
TTTCCTTTTGACAGGTGATATATGACGTTTTTCTGCAAGCCTATTTTTCT
TTATAACCTTCAGTTGACGCTCTCAATTTCGATTTTCATCGAATGAGGAA
GCGTATCGAATCATAGAGTGCCGTTTATGAGAGTCTCTTGTTGACGGTGG
CTTTGTATCGATAATGGATTGTATCAAAAATTAGAACGTCGTATAAGAGA
ACGTCTAAGGTATCTATCAGTAGACTCATATTAAACAAACGATCTCCTTT
TTGTTACAGGTTGTGGCTAGGATATTCTACACAATCAACCGATCTTGGAA
CGGAAAACTCTCCTTAACCGAACTAAGGCGGAGTAATTTCTTAACGGTAT
GTTTCCTTAACTATTACGATGCAGTGTGTGTTTATCGATTCAGTTTCTTG
ATATTATTGATTTACTCTAATTGATAAATTTAATTTGATTTCTTCATTCG
ATTTGATTTCTTCATTCGATGTACAGATTTGCTAGGACTTTAAGAAAAAC
TTAACATTAAAATTGAAGTAAAAGGTGTCTCTTTGATATCTAATCACATG
ACGTCATTTGGGCATTGACATGTTTTCGTTTTCTTCAAATTTCAGGTTTT
GAAAACTTTAGAAGAGGAAGAAGATATCAACCAAGTAAGAGAAACTTCTC
TTCACTTCTCTTCACTTCGTTTGTTTCCTTTTCCTGAAAGATAATCAAAT
TGTAGAAATTTCTGGCATCATGCCAAGTGACATGGCCCCATTAAGCAAAC
AACCTACGTCAATAGGATTAACGAGGTCGTATGCAGTTGCTGCGGTCATA
AATTAATTACATAGATTAATTATTTTAATTAATCGGGATCAGCAATCTTG
ATAAAATAGATTTATGGAAAAAAGTAGATTATTTCAAGTAGATTTAATGT
GATTTATGGCTTCCTAACTTCTTTGTTTTGCTTTCAATGCAAAAAGACAG
GCAAATGTTTTCAGCATGAGTGCTGCCTGATCACGTGCTGAAAACCAAAT
TTGGTTTCCTTTGGCTTTTGATTAAACCTTACTTAAAAAAACATCCACCT
AAAATTGAGCTGTCTCAGTGATGAGTTTTACATAGTAAAACTAATGAAAG
TTTTCTCAAGGGTGTCTAATGAGGTCACCTCGGTAATTTTGGATATTCAA
TATCCCTACCCTTGTATCTTAGGCACCTAATTGTAACGAATTTGATCCCC
GTAATCCGACCTTCCACAGGGGGGAAAAAACTGAAAAAACCGCTACTTCG
TTTTCGTCAATTACAAATAAGGTGATGGGATTTAGAACACGAGTATCTTA
CATATGGGAGAACTAACCCAATTTCCTTTCTCTCAAACAGGTTGTGGATT
TCTTCTCGTACGAACATTTTTACGTCATCTATTGCAAATTCTGGGAATTG
GACACCGACCATGATATGGTTATCAGTAAAGATGATTTGTCCAGATACTC
CAATGGAGGTACGGACAATCTACTTTCCATGGAAACCCCCGCTGTGTTTT
ACTTTTTGGTTTCCCATTTTAGCCTGTAATTTTTTTGCGATTTTTGGGGA
AATATAGTCTTTTTCGTAGTAATTTTCCCCTATTTTTAATTCAAATTTTC
TCCCTCTTCTGCTATCTGCTCTAAATCTTTATACATTTTCCAGAAATTGC
TTGATTTTTTTATCCATTTTTTAATGTGTAATTTTCTTTCTTTCAATTCT
TAGCGGTTTCATTACGAATGATCGATCGATTATTCTCTGGCTGTGTAACC
AGAGATCAAAGTTTGAAAGAAGGCAAAATGTTATACGTAGATTTTATTTG
GTTCATCTTATCCGAAGTTGATAAAGCCTCACCAACTGGGTAAGCAACAA
TGCTGTTCTATCTTCTCTGTAAAAGTAGCTCATTAATTTTGATTTTTGTT
TGAGCGATTTTTATGCATTTATACTTTTGAGAAGGNCTGCTGTTCTATCT
TCTCCGTAAAAGTAGCTCATTAATTTTGATTCTCTCGCTGTATGTTTTAG
CAAATTTTATGCATTTTTATTTTACTTTCAATCCGGCGTTGTTTGTGGAA
AAACCACGCGCTGGCGTTCTGGATTAAGTAGCTTAATTTCCCATCAAAAA
GTTTCTACTCTAGCCCTTCGGGGCTTAAACTCAATGCTGGTATTCCTCAG
TCAGTCAGTATCTAGAGAAATAAGAAGCTATGGGAAAGATGACATGAATA
AACTTCAAAGTAAAAATATATAGGTGGCAAGCAAAAAGGCTCTCCGGTTA
TTTTAATATCATTTTTTTAAACATTCCTTCCTCCAATCAGAATGGAGTAC
TGGTTTCGTTGCATGGACATGGACGGTGACGGTGTGATCAGTATGTACGA
ACTACAATATTTCTACGAAGATCAACTGCAAAAGATGATCGAACTTGGCA
TGGAAACTCTCTCATTCCAAGACTGCTTATGTCAGGTAGGTGTTTGTCGT
TTATGAAATTTTTTGTTTTGAGATCGACTTGAGTTTAGATTATATCTTTG
TTACAAAAGTCGGACCAACGAAGGAAATTTTGTCACCTATTTATTAATTC
ACAAGGTTTGAAACCAAGCTTCAAAGTTTTACGAACTTGTCAAATGAGTA
AAATCTCTGACCATCAAGAATTTAAATTCAACCAGTTTTCTCCTGCTTTT
TACAGATGTTGGATTTAGTGAAACCTTCACATCCTTACCAAGTGACGTTG
AGAGATTTAAAGAAGTGTAAACTAGCGCCTGTTTTCTTTGATACATTTTT
CAACCTGGAGAAATGGCTTGAACATGAACAAAAAGATCCTTTTCAAGCTT
CTAGAGTAAGTGTACTGTAGTAGAATTTATTCGCCGATGTTACGTAATTA
GAAGTTGTCTGGCTGATACTGTCACTTTTTAAAGCTTGAGGAAAAGAGGA
TGAAACCTTTTGCTAAACATGAGGAAAAGAAAGAACGTAAAAATTTCACC
TGTTTCAACAATTTCTTCCTCAGACACACATACAAATTCTTTTTCATGAT
GTGTCTTCTGACATTACATCACGGACCCAACAGCTGATTGGTTGTAAGTG
ACGTAAAATCAGTCAATACGTCACTTTCTACCAATCAGCTGTTAGATCCG
TGGAAGACATTGCAATGGTGCATATCATGAATGCAGTGTCTTCTATGACT
TGAACATGGCTCAAAGAGTAAGAAGATCTGTTTGAATAATGGAGGAGTTT
CGACTATCATTTGGGATAATTTTAAAACTGTCTGCGCATTATTTTACCCT
TTGAATTAAATTCCCTTTCTTTTAGAACGAGAACGGAGAACCGGAAGTGA
GCGCATGGGAAAGATACGTAGGAGAAGAATATGAATTGCTCGTCGCCGAA
GAAGGAGCATCTCAAATCAACCAAGAAATGTAAGTTCTTCTCGTAAAGCT
TTTCCTGTCAAAAGATACCATCATTCCACATAGACGTTCCACATAGTTTT
TGCCAAACTATAATTTCAAACTATGTTTTCTGTGACTTTGTTACTCTCAA
CCTTTTGATACTCACGGTATTGTAACAAGCAGCTCCCAAGGGATTTTTTC
ATATAGATGATTGTCTCAAACATGACCCCATGACCTACTACTTAAATCTC
AAATTAAAAGACACACCCTCTATTTGTCACATGTGACATGTCAAATCCGA
AAAAATCGAGTCTCAGTTTCTACAGTGATACAACCTTGACCTTTACTAAG
CCAAGAAAGGCTTGACATGTCTTTCAACAAACTTTTTTTGGTGAAAAACT
TGATCATCTAAAAATCATGGGAATAAAAAAGCCAGTATTTTAACTTGATC
TTTCTTTTGAGGTTTGACAACTTTGTGTTTTAAATAAAGTTTGACCCAGA
TTAAACTTGTTTTTTTTATGTCTAAGAAACTTTTCCTTATCAAAGTTTAA
AGTTTTCCACCATTTTCTAACATTATTTGGCGTTCTGGGCGTTCGAAGAT
GGCGTTGACGCCCAGCTAGCATGTGCAATTACAGTGATATAATCTTTCTT
TTCTGCTTCTTTTCACAGTGATTACGAAGATGATTTTGATGATGAAGAAA
TGTTAACGTACGAAGAATCACTTGCTAAACATTCTTCACTCGACCCTTCT
CTTTCCAACGGTTGGTCTGCGCTCAATGCTGTCAGTTGATCACCACTAAA
GACAGAAATGAGATTTGGTCGGGTGAGAAAAATTAAGACCTGGGCGAAGG
CTACAGAAGAAAGATCGAAGATGCAATCTCCTTGAGATTAACAACAAGAT
TAACAAGATTTATCATTGCACCTACAAGATCAGTTGCAAGGATGCAGTTA
ATTTGACTGTCGAATTATCGTGCCAGAGGTGACAACGTCAAAAGAATTTC
AAGTGCTATTTTGTCTCCAAAGATTTTTACGGACACTGCAATGATGATTT
TTATTGGATGCGTTTGTTTTGGTTTGTAGTGTTTCCAGCAAACACTCGAA
GAGCTGGACTCTAATACTAACTGATTTCCATTGGCTGACTTCACATCCGC
TTTTACTTAATGGCTCAAAATATGTCTCTAAGAAAGACGCACGATGCAAG
ACTTCAAGACATACGCTACCTAGATATTCCGACCTTATTGGACTAAAGCC
ATCCTTTTGAAGGACCAAAATAGTACCATTCAGTCTTCTTTGACTATAAA
AGGACATATAAACAATTTTACGGTTTGGATTTCTTTTCAAGAGCCTCTCC
ACATATTTTGATGCGTAGGTGTCAAAAGACTGGTCACATTTTACTGCTTT
ACACTATATTTTTCTTGATAGGATGCTCTTGAACGAATAAACAAACAATT
CCTTACTTCTCAACCCTTATACAGCGTGTTTGTAGTACAATTGTGTTATG
CTGTAACATATGTGTAATACAATTACCGACGTTTATAACTCGAACTTTAT
TACTAAGTTCCGTGTTGCTATAAGCATTCTGTATAATGATTCTTTTAATG
CGCCTTGTTTTAAAGGTCATATTTTATGAGGATATTTCAATATCTGTATT
TTTCCTAGATATTTGAAAAATTAGATTTGTTAATAATTTCTTTATGATAC
TTGCAGCGTGTCTGGTTGGTTGGTCGAATCAAGCACCTCACAAGCTTATA
TTTATGAACTTTAAATGAACCAGACCTTTTACCAGACACTCTGCGTTACA
ACAAATTAGACTCAACAGTATAGATATGAAAGTTCTTGTAAAATGTAATA
ACAAAATACTTTGTAAATTTGAAAATATTTCGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035507XLOC_035507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056359-exon-scaffold_273-1575043694:106628..107510TCONS_00056359-exon-scaffold_273-1575043694:106628..107510Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:106242..106345TCONS_00056359-exon-scaffold_273-1575043694:106242..106345Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:104323..104425TCONS_00056359-exon-scaffold_273-1575043694:104323..104425Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:102858..102932TCONS_00056359-exon-scaffold_273-1575043694:102858..102932Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:100965..101051TCONS_00056359-exon-scaffold_273-1575043694:100965..101051Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:100677..100715TCONS_00056359-exon-scaffold_273-1575043694:100677..100715Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:99853..99970TCONS_00056359-exon-scaffold_273-1575043694:99853..99970Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:99472..99607TCONS_00056359-exon-scaffold_273-1575043694:99472..99607Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:98876..99020TCONS_00056359-exon-scaffold_273-1575043694:98876..99020Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:98506..98655TCONS_00056359-exon-scaffold_273-1575043694:98506..98655Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:97932..98035TCONS_00056359-exon-scaffold_273-1575043694:97932..98035Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1575043694:96075..97292TCONS_00056359-exon-scaffold_273-1575043694:96075..97292Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:106628..107510TCONS_00056359-exon-scaffold_273-1510915933:106628..107510Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:106242..106345TCONS_00056359-exon-scaffold_273-1510915933:106242..106345Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:104323..104425TCONS_00056359-exon-scaffold_273-1510915933:104323..104425Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:102858..102932TCONS_00056359-exon-scaffold_273-1510915933:102858..102932Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:100965..101051TCONS_00056359-exon-scaffold_273-1510915933:100965..101051Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:100677..100715TCONS_00056359-exon-scaffold_273-1510915933:100677..100715Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:99853..99970TCONS_00056359-exon-scaffold_273-1510915933:99853..99970Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:99472..99607TCONS_00056359-exon-scaffold_273-1510915933:99472..99607Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:98876..99020TCONS_00056359-exon-scaffold_273-1510915933:98876..99020Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:98506..98655TCONS_00056359-exon-scaffold_273-1510915933:98506..98655Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:97932..98035TCONS_00056359-exon-scaffold_273-1510915933:97932..98035Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1510915933:96075..97292TCONS_00056359-exon-scaffold_273-1510915933:96075..97292Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:106628..107510TCONS_00056359-exon-scaffold_273-1491911889:106628..107510Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:106242..106345TCONS_00056359-exon-scaffold_273-1491911889:106242..106345Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:104323..104425TCONS_00056359-exon-scaffold_273-1491911889:104323..104425Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:102858..102932TCONS_00056359-exon-scaffold_273-1491911889:102858..102932Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:100965..101051TCONS_00056359-exon-scaffold_273-1491911889:100965..101051Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:100677..100715TCONS_00056359-exon-scaffold_273-1491911889:100677..100715Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:99853..99970TCONS_00056359-exon-scaffold_273-1491911889:99853..99970Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:99472..99607TCONS_00056359-exon-scaffold_273-1491911889:99472..99607Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:98876..99020TCONS_00056359-exon-scaffold_273-1491911889:98876..99020Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:98506..98655TCONS_00056359-exon-scaffold_273-1491911889:98506..98655Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:97932..98035TCONS_00056359-exon-scaffold_273-1491911889:97932..98035Clytia hemisphaericaexon
TCONS_00056359-exon-scaffold_273-1491911889:96075..97292TCONS_00056359-exon-scaffold_273-1491911889:96075..97292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:96075..107510 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.60495	6.64669	9.24552	7.90964	23.4223	17.4545	11.6309	11.5539	4.30611	5.65986	4.0776	3.16587	7.80911	7.54558	4.92777	6.44987	9.25647	9.00996	8.21194	8.53084	8.68873	9.275	9.30283	8.61208	6.53122	6.83434	3.75053	2.53756	10.8189	11.2628
Blast
[Close]
BLAST of TCONS_00056359 vs. Swiss-Prot (Human)
Match: P2R3B (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta OS=Homo sapiens GN=PPP2R3B PE=1 SV=2)

HSP 1 Score: 507.679 bits (1306), Expect = 4.802e-167
Identity = 250/518 (48.26%), Postives = 344/518 (66.41%), Query Frame = 2 
Query:  392 GPTMIPLLKEKVDELFLHWFSEVETQQNLRKELSNILGT-HDEIVPISTPFLTSSPHGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSR-KGSRKNPRRRT-QEEQKPALYPGCAEKLKPFYFPFGEPRTLENEGNTVNSITTYFDRLKNQTATMDDFPQLMKICGAPLYWKYPYFLACGGNKSNTITCKKFIATWKHVNTKYHDEASRFFHLLSKDSQKHLTYDDFEGLLQDIINTHPGLKFLLDAPEFHSRYIITVVARIFYTINRSWNGKLSLTELRRSNFLTVLKTLEEEEDINQVVDFFSYEHFYVIYCKFWELDTDHDMVISKDDLSRYSNGAVSLRMIDRLFSGCVTRDQSL-KEGKMLYVDFIWFILSEVDKASPTGMEYWFRCMDMDGDGVISMYELQYFYEDQLQKMIELGMETLSFQDCLCQMLDLVKPSHPYQVTLRDLKKCKLAPVFFDTFFNLEKWLEHEQKDPFQASRN-ENGEPEVSAWERYVGEEYELLVAEEGASQ 1930
            G  + P+LK KVDELFL+W SE  TQ+ L+  L  I     D+  P       + P             PP  PG           +  +    +G+R++   R  Q  ++  L P  ++ +  FYFP G P+   N    ++ I + F R  ++ ATMDD   + K CG PLYWK P F   GG ++ +++  KF+A W+ +    HD+A++F HLL      +L  +DF   LQD++NTHPGL FL +A EFHSRYI TV+ RIFY +NRSW+G+++  ELRRS+FL  +  LEEE DINQ+ +FFSYEHFYVIYCKFWELDTDHD++I  DDL+R+++ A+S +MIDR+FSG VTR + + KEGK+ Y DF+WF++SE DK +PT +EYWFRCMD+DGDG +SM+EL+YFYE+Q +++  + +E L FQDCLCQMLDLVKP    ++TL+DLK+CKLA VFFDTFFN+EK+L+HEQK+     R+ ++G PE+S WE+Y  EEY++LVAEE A +
Sbjct:    4 GKVLQPVLKMKVDELFLYWLSEASTQRMLQDCLRRIKAPGRDQPTPGDGEQPGAWPTAPLAAPRPSGLEPPGTPGPGPALPLGAASSPRNAPHVRGTRRSAGTRVVQTRKEEPLPPATSQSIPTFYFPRGRPQDSVNVDAVISKIESTFARFPHERATMDDMGLVAKACGCPLYWKGPLFYGAGGERTGSVSVHKFVAMWRKILQNCHDDAAKFVHLLMSPGCNYLVQEDFVPFLQDVVNTHPGLSFLKEASEFHSRYITTVIQRIFYAVNRSWSGRITCAELRRSSFLQNVALLEEEADINQLTEFFSYEHFYVIYCKFWELDTDHDLLIDADDLARHNDHALSTKMIDRIFSGAVTRGRKVQKEGKISYADFVWFLISEEDKKTPTSIEYWFRCMDLDGDGALSMFELEYFYEEQCRRLDSMAIEALPFQDCLCQMLDLVKPRTEGKITLQDLKRCKLANVFFDTFFNIEKYLDHEQKEQISLLRDGDSGGPELSDWEKYAAEEYDILVAEETAGE 521
The following BLAST results are available for this feature:
BLAST of TCONS_00056359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P2R3B4.802e-16748.26Serine/threonine-protein phosphatase 2A regulatory... [more]
back to top