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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056356 ID=TCONS_00056356|Name=TCONS_00056356|organism=Clytia hemisphaerica|type=transcript|length=4424bpRun BLAST on NCBI protein sequence of TCONS_00056356-protein >TCONS_00056356-protein ID=TCONS_00056356-protein|Name=TCONS_00056356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1092bp MADQVQQFHELVRSLMSADNETRNNAESQYFNIDEPTRLQFLLQCVIAGDRun BLAST on NCBI transcript from alignment at scaffold_273:20124..46492- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056356 ID=TCONS_00056356|Name=TCONS_00056356|organism=Clytia hemisphaerica|type=transcript|length=26369bp|location=Sequence derived from alignment at scaffold_273:20124..46492- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_273:20124..46492- >TCONS_00056356 ID=TCONS_00056356|Name=TCONS_00056356|organism=Clytia hemisphaerica|type=CDS|length=81975bp|location=Sequence derived from alignment at scaffold_273:20124..46492- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056356 vs. Swiss-Prot (Human)
Match: IPO5 (Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4) HSP 1 Score: 1191.41 bits (3081), Expect = 0.000e+0 Identity = 616/1088 (56.62%), Postives = 793/1088 (72.89%), Query Frame = 2
Query: 254 QQFHELVRSLMSADNETRNNAESQYFNIDEPTRLQFLLQCVIAGDAIE-LRTMAAVLFRRLLSN-IDDFAGTVPANVQDICKSQLIEAAHKEQDESMRKKISDSIAELAKCYLGEDGNNQWPDILKFLYECCNSDQNTMKEVALHIIIAFPGIFGTQQDTYIQVIKEMLVTCIQPPNADKVRLLSARAAATFI-TECLGEAKFKSFAELYPGILEAIGIAVKSEGDDNVLKSFVEMVEVAPKLVKQNLHGTLGMMLEILANTNLENSWRHLALETIVTLSETAPAMIRKNSADMIPKIIPEILALMVDLDEDEDWSFSDDIEDTDMESNPVAGESSLDRFTCALGGKAVLPHIIATIPPMLEHADWRYRHAALMAVSAIAEGCAKQMEPLLANVVDSVLPFLQDPHPRVRHASCNALGQLATDFTVLFQKKFHAKVMPGLVNLLLTDSAHPRVQXXXXXXMVNFCEDCPPKIIEPYLDSLVDALENVLSSKLEELLKRGVKLVLEQVLTTIATVADTAESRFIKYYDRFMPSLKYIFQNATQKDYRLLRGKTIECISLIGLAVGAEKFLPDASEVMQLLLKTQTXXXXXXXXXPQVSYLISAWARMCKIIGKDFVQYLPVVMPPVLKAAQIKPEVALLDLDDPQHQNVNEDDGWEFVNLGEQQKFGIKTAGLEDKSTACQMLVHYARELKDGFVDYTEQVVKIMVPLLKFYFHDTVRVTAAESLPHLLECAKVRGDEYLSQMWSFIATELLTSIXXXXXXXXXXXXXXSFAKCIEVLGIGHLAPDTLTQLGQIMHDKLEQHSERQHERHDKRNDEDYDEEVEEGLQDEHETDEYILSKVSDIMHALFKTHKEIALPFFEQMLPDFCKLMTPQRPASDRQWALCIFDDLLEYTGPVSWKYQGYFLKELINSIQDLSSEVRQAAAYGCGVMAQFGGNDYAEACAKAVPLLVTVIEHAESRAKENVNPTENCISAVTKICKHNSSMINANEVITKWLSWLPVTEDQEEAPHVYGYLCDLIEANHPQVLGESNSNLPSIVKIITEAIAADVFEQYPDSATRIKAILATVQQNEPVWAACLSMLDERQLEALK 3508
QQF+ L+ +L+S DN R AE Y NI +++ FLLQ + A E R MAAVL RRLLS+ D+ +P++VQ KS+L+ E SMRKK+ D AELA+ + EDGNNQWP+ LKFL++ +S ++E ALHI FPGIFG QQ Y+ VIK MLV C+Q +R LSARA A FI A FK FA+L PG L+A+ + + DD+VLKS VE+ + PK ++ +L TL + L++ +T+L N R LALE IVTLSETA AM+RK++ +++ + IP++LA+MVDL+EDEDW+ +D++ED D +SN VAGES+LDR C LGGK VLP I I ML++ DW+YRHA LMA+SAI EGC +QME +L +V+ VL FLQDPHPRVR+A+CNA+GQ+ATDF FQKKFH KV+ L+ + D + RVQAHAAAA++NF EDCP ++ PYLD+LV L +++ KL+EL+++G KLVLEQV+T+IA+VADTAE +F+ YYD FMPSLK+I +NA QK+ RLLRGKTIECISLIGLAVG EKF+ DAS+VMQLLLKTQTD +D +DDDPQ+SY+ISAWARMCKI+GK+F QYLPVVM P++K A IKPEVALLD D +N+++DDGWEFVNLG+QQ FGIKTAGLE+KSTACQMLV YA+ELK+GFV+YTEQVVK+MVPLLKFYFHD VRV AAES+P LLECA+VRG EYL+QMW F+ L+ +I EP+ V+ E+M SFAKCIEV+G G L + +LG I+ KLE+H + Q R KR DEDYDE+VEE LQDE + D YIL+KVSDI+H++F ++KE LP+FEQ+LP L+ P RP DRQW LCIFDD++E+ P S+KY YFL+ ++ + D S EVRQAAAYG GVMAQ+GG++Y C +A+PLLV VI+ A+S+ KENVN TENCISAV KI K +N EV+ WLSWLP+ ED+EEA + YLCDLIE+NHP VLG +N+NLP I II E + + A R+ ++ VQ + +W C++ L Q A++
Sbjct: 9 QQFYLLLGNLLSPDNVVRKQAEETYENIPGQSKITFLLQAIRNTTAAEEARQMAAVLLRRLLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDEDGNNQWPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPSIRTLSARATAAFILANEHNVALFKHFADLLPGFLQAVNDSC-YQNDDSVLKSLVEIADTVPKYLRPHLEATLQLSLKLCGDTSLNNMQRQLALEVIVTLSETAAAMLRKHT-NIVAQTIPQMLAMMVDLEEDEDWANADELEDDDFDSNAVAGESALDRMACGLGGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTM-EDQGNQRVQAHAAAALINFTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQTDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQD--MENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMVPLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSEIMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQVQTSGGLWTECIAQLSPEQQAAIQ 1091 The following BLAST results are available for this feature:
BLAST of TCONS_00056356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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