TCONS_00056350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056350
Unique NameTCONS_00056350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056350 ID=TCONS_00056350|Name=TCONS_00056350|organism=Clytia hemisphaerica|type=transcript|length=709bp
TTAAAATTAGAATCGATGAACTTCCTTGTCGAGAATAAGGTATAAATACG
GGCGTTTGTGAGCCTTCCATTATCAGTTCATCGAGTCATCAATACGAAAC
AAGTATTCAATCATCACAAGAAACCAACACAAATCGAAATGTTGAAGTTA
GCTTTTGGATTAATGCTGATTGCAGTCTGTGGTGCAAGCACCATTCAACT
GTTGAGAGTGCGCACAACGAAGAGTGTTTACACTTCACAATACACCATCC
ATCGCAAAGCATACAACTGGCTTCAAGCACGTGCTGAATGCAGACGATGT
GGTGGTCATTTGGTTACCATCAATGATGCAGCTGAGCATTTCTTCCTGAC
TAGAGCGTTACAGAGATACAAGATTCGCTCTGCATGGACTGGTTTGAACG
ACAGAGCTAAAGAAGGTGATTACCGTTGGGATCGATTCAACTCAGCAGGA
GGATACAAAAGATGGTGCAAGGGAGAACCAAACAATTTGGGAAATGAAGA
TGCTGCTGAGCTTTTTGCCCATACGTCTTCATGTTTGAATGATTTGGGAA
TCCATCATAAACGATTCTTCATTTGCGAAGTCAACGTTCACAAAACATTG
AGCATCAAAActgtttaattttgttttatcGATTTTTTAGAACGTGTCAT
ATCTTTTCCTTCATTATTTCTTGtgttaaaaaattctttttgggaTGAAA
TATAAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00056350-protein

>TCONS_00056350-protein ID=TCONS_00056350-protein|Name=TCONS_00056350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MLKLAFGLMLIAVCGASTIQLLRVRTTKSVYTSQYTIHRKAYNWLQARAE
CRRCGGHLVTINDAAEHFFLTRALQRYKIRSAWTGLNDRAKEGDYRWDRF
NSAGGYKRWCKGEPNNLGNEDAAELFAHTSSCLNDLGIHHKRFFICEVNV
HKTLSIKTV
Run BLAST on NCBI

transcript from alignment at scaffold_273:141291..142626+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056350 ID=TCONS_00056350|Name=TCONS_00056350|organism=Clytia hemisphaerica|type=transcript|length=1336bp|location=Sequence derived from alignment at scaffold_273:141291..142626+ (Clytia hemisphaerica)
TTAAAATTAGAATCGATGAACTTCCTTGTCGAGAATAAGGTATAAATACG
GGCGTTTGTGAGCCTTCCATTATCAGTTCATCGAGTCATCAATACGAAAC
AAGTATTCAATCATCACAAGAAACCAACACAAATCGAAATGTTGAAGTTA
GCTTTTGGATTAATGCTGATTGCAGTCTGTGGTGCAAGCACCATTCGTAA
GCCACTTATTACCCTTTTTTCGAGCTTTCAGTTAGTATCTTCAACCCTGC
AAACATTTACTTGTTTATTTGTCCCAAAACTTTCTTTGTTATGATTAAAC
ACTTGAATGATGTGTGGCTTATACGACATAGAAATAATCTACTGAAGCGC
AAGTAATTCCAAAAAACTTAAAGTTTCGAAGTATTCGACAGGCTTAAAAA
GGGACTTTCCGGAGGTAATACAATCTCAGTGTGGTATAAcagttttttct
cattttcatttgcaGAACTGTTGAGAGTGCGCACAACGAAGAGTGTTTAC
ACTTCACAATACACCATCCATCGCAAAGCATACAACTGGCTTCAAGCACG
TGCTGAATGCAGACGATGTGGTGGTCATTTGGTTACCATCAATGATGCAG
CTGAGCATTTCTTCCTGACTAGAGCGTTACAGTGAGTATTTATTTCCGGT
TTAAAGAAATTATCAAAGATCGAGCCCCTCAAagaatcataaaatctgaa
aattttgagcTGAAAATTGGATTATAGTCTATCAAAGGGTCACAAAAACT
TCGATATTCAGTCTCTCAAaaggtcgattttcgaactttcgcTCAAAcat
cacctcgcaaacctattCCCCCACCGGgggattcgaattacagaaagcaT
TTTAGAAGCTAAATGAAGGTCGGGTCCGCTAAAacccttttttaaaaaag
agttGGTTTTTTGATGAATTTATTCCAAAAGCTTTACTAGAGAGGTCATT
CAAAAATGATAGTAATCGCTATACCTCTCACTCCCGCAGGAGATACAAGA
TTCGCTCTGCATGGACTGGTTTGAACGACAGAGCTAAAGAAGGTGATTAC
CGTTGGGATCGATTCAACTCAGCAGGAGGATACAAAAGATGGTGCAAGGG
AGAACCAAACAATTTGGGAAATGAAGATGCTGCTGAGCTTTTTGCCCATA
CGTCTTCATGTTTGAATGATTTGGGAATCCATCATAAACGATTCTTCATT
TGCGAAGTCAACGTTCACAAAACATTGAGCATCAAAActgtttaattttg
ttttatcGATTTTTTAGAACGTGTCATATCTTTTCCTTCATTATTTCTTG
tgttaaaaaattctttttgggaTGAAATATAAAAAC

Coding sequence (CDS) from alignment at scaffold_273:141291..142626+

>TCONS_00056350 ID=TCONS_00056350|Name=TCONS_00056350|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_273:141291..142626+ (Clytia hemisphaerica)
ATGTTGAAGTTAGCTTTTGGATTAATGCTGATTGCAGTCTGTGGTGCAAG
CACCATTCAACTGTTGAGAGTGCGCACAACGAAGAGTGTTTACACTTCAC
AATACACCATCCATCGCAAAGCATACAACTGGCTTCAAGCACGTGCTGAA
TGCAGACGATGTGGTGGTCATTTGGTTACCATCAATGATGCAGCTGAGCA
TTTCTTCCTGACTAGAGCGTTACAGAGATACAAGATTCGCTCTGCATGGA
CTGGTTTGAACGACAGAGCTAAAGAAGGTGATTACCGTTGGGATCGATTC
AACTCAGCAGGAGGATACAAAAGATGGTGCAAGGGAGAACCAAACAATTT
GGGAAATGAAGATGCTGCTGAGCTTTTTGCCCATACGTCTTCATGTTTGA
ATGATTTGGGAATCCATCATAAACGATTCTTCATTTGCGAAGTCAACGTT
CACAAAACATTGAGCATCAAAActgtttaaATGTTGAAGTTAGCTTTTGG
ATTAATGCTGATTGCAGTCTGTGGTGCAAGCACCATTCAACTGTTGAGAG
TGCGCACAACGAAGAGTGTTTACACTTCACAATACACCATCCATCGCAAA
GCATACAACTGGCTTCAAGCACGTGCTGAATGCAGACGATGTGGTGGTCA
TTTGGTTACCATCAATGATGCAGCTGAGCATTTCTTCCTGACTAGAGCGT
TACAGAGATACAAGATTCGCTCTGCATGGACTGGTTTGAACGACAGAGCT
AAAGAAGGTGATTACCGTTGGGATCGATTCAACTCAGCAGGAGGATACAA
AAGATGGTGCAAGGGAGAACCAAACAATTTGGGAAATGAAGATGCTGCTG
AGCTTTTTGCCCATACGTCTTCATGTTTGAATGATTTGGGAATCCATCAT
AAACGATTCTTCATTTGCGAAGTCAACGTTCACAAAACATTGAGCATCAA
AActgtttaaATGTTGAAGTTAGCTTTTGGATTAATGCTGATTGCAGTCT
GTGGTGCAAGCACCATTCAACTGTTGAGAGTGCGCACAACGAAGAGTGTT
TACACTTCACAATACACCATCCATCGCAAAGCATACAACTGGCTTCAAGC
ACGTGCTGAATGCAGACGATGTGGTGGTCATTTGGTTACCATCAATGATG
CAGCTGAGCATTTCTTCCTGACTAGAGCGTTACAGAGATACAAGATTCGC
TCTGCATGGACTGGTTTGAACGACAGAGCTAAAGAAGGTGATTACCGTTG
GGATCGATTCAACTCAGCAGGAGGATACAAAAGATGGTGCAAGGGAGAAC
CAAACAATTTGGGAAATGAAGATGCTGCTGAGCTTTTTGCCCATACGTCT
TCATGTTTGAATGATTTGGGAATCCATCATAAACGATTCTTCATTTGCGA
AGTCAACGTTCACAAAACATTGAGCATCAAAActgtttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035502XLOC_035502Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056350-proteinTCONS_00056350-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056350-exon-scaffold_273-1491911889:141291..141486TCONS_00056350-exon-scaffold_273-1491911889:141291..141486Clytia hemisphaericaexon
TCONS_00056350-exon-scaffold_273-1510915933:141291..141486TCONS_00056350-exon-scaffold_273-1510915933:141291..141486Clytia hemisphaericaexon
TCONS_00056350-exon-scaffold_273-1575043694:141291..141486TCONS_00056350-exon-scaffold_273-1575043694:141291..141486Clytia hemisphaericaexon
TCONS_00056350-exon-scaffold_273-1491911889:141756..141921TCONS_00056350-exon-scaffold_273-1491911889:141756..141921Clytia hemisphaericaexon
TCONS_00056350-exon-scaffold_273-1510915933:141756..141921TCONS_00056350-exon-scaffold_273-1510915933:141756..141921Clytia hemisphaericaexon
TCONS_00056350-exon-scaffold_273-1575043694:141756..141921TCONS_00056350-exon-scaffold_273-1575043694:141756..141921Clytia hemisphaericaexon
TCONS_00056350-exon-scaffold_273-1491911889:142280..142626TCONS_00056350-exon-scaffold_273-1491911889:142280..142626Clytia hemisphaericaexon
TCONS_00056350-exon-scaffold_273-1510915933:142280..142626TCONS_00056350-exon-scaffold_273-1510915933:142280..142626Clytia hemisphaericaexon
TCONS_00056350-exon-scaffold_273-1575043694:142280..142626TCONS_00056350-exon-scaffold_273-1575043694:142280..142626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_273supercontigscaffold_273:141291..142626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.354777	0.622735	0.352464	0.48423	1.68716	1.49279	13.2072	11.6151	19.402	26.5146	7.25381	18.2408	11.7998	5.9678	11.2569	30.8766	1.54911	3.88724	0.301709	0.157858	0.376222	0.602325	0.244068	0.40562	0	0	0.0972941	0.311505	0.259135	0.240717
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top