TCONS_00056337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056337
Unique NameTCONS_00056337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056337 ID=TCONS_00056337|Name=TCONS_00056337|organism=Clytia hemisphaerica|type=transcript|length=332bp
TGCATTTCAAAGTTTAATGCTTTGAAAGTGCTTTATCACCCATGTTAAAC
TCAAAAACTATTTTGAACAGCAACTTCCCAGGAAAAAGATCTACAGGGAG
AAGACAAACATTTTAGATTGCGGCATCATCTGATAGACCATTTTCCGGAA
ACTTTGCCAGACTTCATACACTGGCCAATTTTCATGCGCGGGATTATTTT
ACTTTAAGTAGCGTGTAAATCAAAGCCTAACAATTATCAAGGGAATTGAA
TAAACATCTTAGTTGGCTGATCAACAGGATGATCAGGTTGATCATTagcc
attttgttttatttcttaaGCTTTTATGTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_272:31532..31863

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056337 ID=TCONS_00056337|Name=TCONS_00056337|organism=Clytia hemisphaerica|type=transcript|length=332bp|location=Sequence derived from alignment at scaffold_272:31532..31863 (Clytia hemisphaerica)
ATAACATAAAAGCttaagaaataaaacaaaatggctAATGATCAACCTGA
TCATCCTGTTGATCAGCCAACTAAGATGTTTATTCAATTCCCTTGATAAT
TGTTAGGCTTTGATTTACACGCTACTTAAAGTAAAATAATCCCGCGCATG
AAAATTGGCCAGTGTATGAAGTCTGGCAAAGTTTCCGGAAAATGGTCTAT
CAGATGATGCCGCAATCTAAAATGTTTGTCTTCTCCCTGTAGATCTTTTT
CCTGGGAAGTTGCTGTTCAAAATAGTTTTTGAGTTTAACATGGGTGATAA
AGCACTTTCAAAGCATTAAACTTTGAAATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035490XLOC_035490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056337-exon-scaffold_272-1491911889:31532..31863TCONS_00056337-exon-scaffold_272-1491911889:31532..31863Clytia hemisphaericaexon
TCONS_00056337-exon-scaffold_272-1510915933:31532..31863TCONS_00056337-exon-scaffold_272-1510915933:31532..31863Clytia hemisphaericaexon
TCONS_00056337-exon-scaffold_272-1575043694:31532..31863TCONS_00056337-exon-scaffold_272-1575043694:31532..31863Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_272supercontigscaffold_272:31532..31863 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.57686	0.281265	0	0	1.55586	1.53682	0.370823	0.694319	0.972218	1.20425	0.584437	0.960465	0.767303	0	2.12914	1.58185	0.433047	0.443859	1.53304	2.56674	1.39435	1.63228	0.330708	0.300662	0.309675	0	0.395495	0.422083	0	1.63083
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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