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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056318 ID=TCONS_00056318|Name=TCONS_00056318|organism=Clytia hemisphaerica|type=transcript|length=1279bp
CATGGGGATATGATGAAGACATTTTTCACAATGAGTTTGTGCTAActtta
ttattaatttttgacAATGATTTATCATTATGTATTTGATAGTGTTTGTG
TGTCAGCTATGCTTTGTTTACTCCAATTGGTATTCGGgcgaagaaaaaca
acaaacaacaatacATCTTGATACAGAAGAAGCATCCAAACCTATTTCTA
CGTCATCACCGATCGAATGCATTTTGGAATGCCAGAAAACAGTTAAAGAA
AGCTATTATGTAGAAAAggaaaatcaatgtttttgcttgaaaaatgaaga
tcagAAGATATTCTCGAGGAAGAAAGCTGAAGGAATATTTTACGCTTCTA
AGCGATATCGAAATTGCCAAGAAATCAAAGATGTATGTCTCAATTGCAAG
TCTGGCATTCACACAGTTGAACCTGAACGTGATGTATCGACCAAAGTTTT
TTGTGATATTGATACAATTAAAGGTAccaaatacacctttttgatCAACG
GTAAACGTCACCCATCATTGAAACTTATGGACAAATGGGAAGGTTTTCCT
CAAACTTATGGTGTTGGAAAAACATATGTTGGAGATGTTCAAGATGAGGT
GTTCAGAGCAAATGAAATCATCACCTGGGAAAATACTGCAGGACGAAGTG
GACCATATCAATGGTTAGGATTCAGCTCTAGTGTTTTCGCCAATAAACAA
CTGCATATTGAATTCTGGATTAAGTTTGTGGCATCTGTTCCAAACCGTTC
TAACAATTTTGGGATGAAAGTCTATGGTGTGGTTTATAATTCGTGGGTTG
ATGATTGTCAAAAAGATGAGTGGTGCAAAGTATCTTTGAATATCAAGTGT
CGCAGCAATGGCTATTATGTCATTTTGATCTTTGATTCCATCAATCGAAG
ACAAGTCGTTCGAATTACACATTTCACACTAaccattttgaaataaaaat
gttatGCAATCATTGCAAATGGAGGATACAAGATGTTTAGCCCAAAGGTT
GGTATCCAGAGACACTTACaccaatttttgattttactaaTGGACGTGAT
ATAATCCATCACAAATAAGTGAACTAAGGGACTGTGTTTGAGTATTGTGT
AACCCCTTAATGGTCATTTTTAATGTTTCATGTCCCTCTTTCTCTCTAGC
TGTCGTAAAAGTCATGCATCGATATTACAGCCTATGTAAAGATACAAAAt
gttcatagcgacagctacaTTCCCGGGGGGGGAGGTTACCCAAGATAAGC
GGCCTAAAGTACGTCCAACCTTCTCAAAG Run BLAST on NCBI transcript from alignment at scaffold_272:185298..190683+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056318 ID=TCONS_00056318|Name=TCONS_00056318|organism=Clytia hemisphaerica|type=transcript|length=5386bp|location=Sequence derived from alignment at scaffold_272:185298..190683+ (Clytia hemisphaerica)
CATGGGGATATGATGAAGACATTTTTCACAATGAGTTTGTGCTAActtta
ttattaatttttgacAATGATTTATCATTATGTATTTGATAGTGTTTGTG
TGTCAGCTATGCTTTGTTTACTCCAATTGGTATTCGGgcgaagaaaaaca
acaaacaacaatacATCTTGATACAGAAGAAGCATCCAAACCTATTTCTA
CGTCATCACCGATCGAATGCATTTTGGAATGCCAGAAAACAGTTAAAGAA
AGCTATTATGTAGAAAAggaaaatcaatgtttttgcttgaaaaatgaaga
tcagAAGATATTCTCGAGGAAGAAAGCTGAAGGAATATTTTACGCTTCTA
AGGTAACtatcctgggggggggggggttttgggAAAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggg
gggggggggtatttaggaaaatggagggtacggtatgtgccgcccttaag
ggtattttttttggactaagtcccgctaagggtcggaaaaatcagaaaat
ctaatttcagtctTACTAAGGGTCGGAGTAAAATTCGaaagaaagatcga
aatttggtcaaaattggtcaaatttgtcccaataagggtcgtaaaattca
caacacgtttctttgttttctcatttttagtcccggtaagggtctaAAGG
TCGAAGATCGGGCggcagccccccccccccccccccccccgggggaacca
ttttttttaaatttaattttgggtttctattttttttttctttttatgtc
cGTAATGGGTTTAAAGGCGCAAGAGCGGGGggccgcccccccccccccgt
cagctcgcaaccctagtcccccccccccccccgtcagctcgaaACTCTAG
TACCTCCCCCCTGGGGGTAACTATATGTCTGAAATTCTACTGTGAGTATC
TATGTTTATTTCAGTTTAGCTTTTTCTGTTCTGAAATTTAACCTGTGAGG
ACAGATCATAACAATTTTTTGTATCACGCATATCTCTCACAtatttagtc
tgaatcgcagacttctatataatatatatatatttcctatataagaaact
tttttcgctagaggatgaacAGAAGCAGGAGAAGCCTATCATATATTggg
cttttttttaatacaagcAATGAGAATCTTTTGCGCTGTCTGTCAGCAAT
AAAAATAGATTATGAgggaattttgataaaatacttCGAAAAGCTCTTAG
ATCAAGAGCTTGCATTTTCATATCAATGAAGGGTGCCGTAGGGTAGGCTT
GGGTAGGGTAGATTATTTTTTAGCAGATCTTTATTGTCTCTTTTGTGCTC
AAATGACTTGAAAGTTTTCtatgcattttttttcaaatttaaggtCTCTa
gacatacccaatttttcgattttaccccaacttaaatggcagtttaaatt
cattttttcaaaagcagtttgttcttaaacatgtcaaagaagcgaaaata
TAAGGTTTtatccacagatatctgtaaagcccgaagggctagataagcAA
CTTTAAGccttctccagcaaaaaaaagtgaagcaaaaatttgactttttg
aatttcgtgccaatggataggatctagcattttaattgttttcggagcgc
gagataaaaaaaagtaggcggcaaacgctatttcacatctctcaaaccgg
tgaaattgcatattttagtcacgtgactttggtaggaaatccttccaaac
atAGGCTTCACTTTtggataaaagccgcaaatctagcccttcgggcttta
cagatctgtggtttTATCTTccaattctgaaattgatttttcactatgac
cagagtCAGAGCCCTtagggagcggtcataaagtatctactagagggggg
tggaggatattttgaaaaatccaaaaaaaatttcgcaccccctcccctaa
cctggaaaaaatttttacgcgaaaaagaattcatccagatgcggtacaaa
gagtattatttgtttgtatgtCAAAATAAGGTAAGGGAGATAGTTTAGCC
CTGTTAAGTTAAAGTATAACAGGGTTAAGACAATAATCATCAAGTGGTTT
TCTCTGAGCttctgtaaaatttggaaaaaaatacggcttattttccccag
tagtgacctggcttaattttctgggggtgcaaactatgaaattggcgccc
ctggtattttttgtccttactCGCGCCCTCCATTATTAAGTGAAACTAGA
AACTGTAAGCAGTATGGTTGAAAGgaacgcccggaatctttgacttgagt
caagaaacttggaatttgttttttgtaatttgaaatgttaagGTGTTTTG
GCATTAGCAGatgctaaggaggcgcaaccatggtttgtgcCGACAagcga
aaatttcaatatttttcaccaccattttagctaaaagacactttgttttg
acaaatttcttttaagaagtactttttcaaaccactctgatgagctgtga
gagccactaatctacttccctcaCCTAGCTCAATGTTAAAAACCAAAAGG
GCAAGgtgatgatgcccaaataatgcCAATATGAAATGTACATATATGCA
ATAAGATAAATTATGAGTTGTCGGCCGTAAGGccgaaaaattttggaaat
cttcaaacgtaaaactatgaaattagacttcctacattttctcttgagtt
tCCCAAAAAGAAATTGGAACACCCCCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATACGTGAATCACGCAATCT
TTTTTTGCGTGAATGtatgaaatttctatttttacccTCAAATAAGCGTA
TGTAAATTTTCCGAATTTTTCCTATTCCTAAGTTCTTCAACAATGGCATT
CATGGTAgtgaaaactatttttgaagGATTGATTCAAAAATAcacatttt
ctttcatttctccTTTCCTCTAGAgtatacaataaaaacattatGTGTGA
TTTTTCAGCTCTCATTTTATACACTAAAATCCATTCGCTCTAGGTGTGCA
CTTATCTAAGTTTGCCATTTTTTGACCAATGCTACTATCATTAAATTTAT
TAtgtaccgttgaaaagataattcagatcACTATaatttcatagaaaaat
aatgtttttccattcatgtttttttgtttttgttttttcatcaGCGATAT
CGAAATTGCCAAGAAATCAAAGATGTATGTCTCAATTGCAAGTCTGGCAT
TCACACAGTTGAACCTGAACGTGATGTATCGACCAAAGTTTTTTGTGATA
TTGATACAATTAAAGGTAAAACAAAAGTACAACTCCGGTGAAACCCACTT
CAAAAAGTCAGAGATAGATTCAAATTAGTTGATCATCGGATCTTTAGCCT
ATCACTGGATCTTTAGATCATTCCTTATATAGGAACATTAGCCTAAAAGC
TAGAAAACTGTCAATGTCTTTCAAAATGTCTTATGTAGTTTATGCCAAAC
TTTGACTTAAAGCGCATGCGTAAGGGCATTATGTTCTAGAGGAAATAACT
ATTTTTAGTTTACCTTTGTTTGAGTTTTCTTTTCTCGATAATAGTCTAAA
GAACCGATCCGGCTTAAAGAAACGATGATTTGCTTATTAGATCTTTTCCC
TGACTTTCAATCACCCAAACTACTCTTTTAGGTGTAAAAACTTTcccgag
cagaaactttcacgaaaaataacaaaatttacgACATTCTCGTATAACTC
CAAATAGGACATAAGTTTGAtgaggaaaatttaaaaagtcaaaaaaaaaa
tttactataACTGGCagttttgaaatctacatccttatacgcttcttttg
acgtAAAAATGACCATGACTAAGGCCCTAAATTTTCTGCACCAAACTTAT
GTCCTTTTTGTACATGCCACACGAGTTtattactttcgcgaattattCGA
ATTATTTGCGAATATTTTAAACATCTTTTTTACGAACCATCTTAACTGTG
ACACGAATTTTAGTTTAGTAAAAAACGCCTTTCATGGCATTTTCCAAACT
CTCAAAACCAACTCTCTTTATCGCTGTTTAGGcctaaaaaaggcaaaaac
ctCTTCACAGAAACCAGTTGGAATCTTCCCATTAGGGGATGTTCGCATCT
ATCTCTCAAAGCTTCTAATTATCACGAGAAACACTAGAAGTTAAGCTAGG
TTAATGAacatgatgattttttttactcAGGTAccaaatacacctttttg
atCAACGGTAAACGTCACCCATCATTGAAACTTATGGACAAATGGGAAGG
TTTTCCTCAAACTTATGGTGTTGGAAAAACATATGTTGGAGATGTTCAAG
ATGAGGTGTTCAGAGCAAATGAAATCATCACCTGGGAAAATACTGCAGGA
CGAAGTGGACCATATCAATGGTTAGGATTCAGCTCTAGTGTTTTCGCCAA
TAAACAACTGCATATTGAATTCTGGATTAAGTTTGTGGCATCTGTTCCAA
ACCGTTCTAACAATTTTGGGATGAAAGTCTATGGTGTGGTTTATAATTCG
TGGGTTGATGATTGTCAAAAAGATGAGTGGTGCAAAGTATCTTTGAATAT
CAAGTGTCGCAGCAATGGCTATTATGTCATTTTGATCTTTGATTCCATCA
ATCGAAGACAAGTCGTTCGAATTACACATTTCACACTAaccattttgaaa
taaaaatgttatGCAATCATTGCAAATGGAGGATACAAGATGTTTAGCCC
AAAGGTTGGTATCCAGAGACACTTACaccaatttttgattttactaaTGG
ACGTGATATAATCCATCACAAATAAGTGAACTAAGGGACTGTGTTTGAGT
ATTGTGTAACCCCTTAATGGTCATTTTTAATGTTTCATGTCCCTCTTTCT
CTCTAGCTGTCGTAAAAGTCATGCATCGATATTACAGCCTATGTAAAGAT
ACAAAAtgttcatagcgacagctacaTTCCCGGGGGGGGAGGTTACCCAA
GATAAGCGGCCTAAAGTACGTCCAACCTTCTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056318-exon-scaffold_272-1491911889:185298..185649 | TCONS_00056318-exon-scaffold_272-1491911889:185298..185649 | Clytia hemisphaerica | exon |
| TCONS_00056318-exon-scaffold_272-1510915933:185298..185649 | TCONS_00056318-exon-scaffold_272-1510915933:185298..185649 | Clytia hemisphaerica | exon |
| TCONS_00056318-exon-scaffold_272-1575043694:185298..185649 | TCONS_00056318-exon-scaffold_272-1575043694:185298..185649 | Clytia hemisphaerica | exon |
| TCONS_00056318-exon-scaffold_272-1491911889:188842..188962 | TCONS_00056318-exon-scaffold_272-1491911889:188842..188962 | Clytia hemisphaerica | exon |
| TCONS_00056318-exon-scaffold_272-1510915933:188842..188962 | TCONS_00056318-exon-scaffold_272-1510915933:188842..188962 | Clytia hemisphaerica | exon |
| TCONS_00056318-exon-scaffold_272-1575043694:188842..188962 | TCONS_00056318-exon-scaffold_272-1575043694:188842..188962 | Clytia hemisphaerica | exon |
| TCONS_00056318-exon-scaffold_272-1491911889:189878..190683 | TCONS_00056318-exon-scaffold_272-1491911889:189878..190683 | Clytia hemisphaerica | exon |
| TCONS_00056318-exon-scaffold_272-1510915933:189878..190683 | TCONS_00056318-exon-scaffold_272-1510915933:189878..190683 | Clytia hemisphaerica | exon |
| TCONS_00056318-exon-scaffold_272-1575043694:189878..190683 | TCONS_00056318-exon-scaffold_272-1575043694:189878..190683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_272 | supercontig | scaffold_272:185298..190683 + |
Blast
The following BLAST results are available for this feature:
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