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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056266 ID=TCONS_00056266|Name=TCONS_00056266|organism=Clytia hemisphaerica|type=transcript|length=1738bp
GTACCTTAGTGCATGATATCATGAAGAATGATCGAAGCCTAGAGCATTCG
ACCAATTGGAATACCGAGAAGATCACCTTTCCGCCAAAAATGCTTAAAGG
TATAAAAATACCTACACAGAACAAACTCATTGACGACTTTCAATACCTCA
TAGAAGGAGAAAGCACTGGCGACAATATGCTGATAATCGTCCCTCAGATA
GCTACTTGTGAACGAGGTGAGTTAGAAATATTCGTAGCGAATCCTCTCAA
CGTAGAAAGAGGAGCCATACTTTCAGTAGTGGCCACCCCTATCACAACAa
ttgaaaaaccaaaatttacaccaaaaaaaaacaaaacaaagaaaaaatat
atatataaaaataataacGTCATTTACGACTGATGCACACAATGGTAGAC
AAATTCATCTTGGACCTAGAGGAGAGTCTAGAACCATTTGACTAGGAGGA
GGAAGTGGACGTAAGGATAGTTCAAGGGACAAAATTAACGCCTTCACAAC
CATCTTCACCTTCACTACCATCACCACTACCACAGTCGCCACCCCCACCA
CCACCATCATCACTACTATCATCGCTAGCACTACCACACCGAGAAAGACG
ACAAAATAAGAGACACGAACCAAAACCAGTAGTCGACTTGAGAGAACAAG
TTAGGAATCAACGTCGCAGAAGAAGAAACAGAGCAAGAGGAGGGAAACAG
ACCGAAGAGATGGTACGAGAAGGTGAACGAGGCCACATTCCTCTGGCATG
TGAGCTGCCTACAGGTTTTTTACCACCACCATACGGGCAAGATAGCACCT
GTGTGGAATGGGCAAGACAAAGTAAAGTACATCGAAGAACAGCTGAAGTT
CTGAGTGGTGAGGTTACCAGTTCTTCTAAGACCCAAGGTGTCGTATTAGG
TTAGGTTTTGACCTCATCAacaatatttttagcttttccTCCTCCACAAC
AGGAAATTAAATTCACTTTGACGAGATTCTACGCGATTTCCGAATTTTCC
TACACTCGAAGTCAATATCAAGTATTTTTATGTAGATAGCACTTACTAGG
TCATTAtttcttttatatattttctaaaacttcgATTAAGACctcaaaat
ttcttattttataacTTTCATGTTAGACTCTTCCTTATGACTatttttat
ttctcaatttagATTCTAACATCATTAACACACTTATTTTTGTTATGTAA
CTAACtcatttatctttatttttaggaataGGGTTTTGTATAAATAGGGA
TTATTTTGTTAGGATTTTTAGTTAGGTTTTCGCTTGCGAATTACAAGCAA
GCATTGGAAAAATGTAAGTTTTTACTTTTATTCTAGTATGGTGATTGTAA
GAGAAAACTTATCTCAGGGAATTTCATTCGTGTTATTTCACTTGTATGCA
CTCTGCCCTCTGATCCGGATGACTAAAGATGACTTTCTGTTCTGAAACTG
AAGTAAGATAGATGCTCGGACTCCCTTACACCTTTTGTTTGAATATAGAA
CTAGACTTTTCGGTCATGACTACGTATAAAACTTTTCAGTGTTTTCAGAG
ATATTTCGAACCattattcaaaaacatttttataaactttGAAAATAGCT
CGACAAAAGATATACTAAGTTTTGAAAACCCCAAGTTTTTGAGAAGTTAG
ACTACATTATTGagatttatttgattttattagGGCTTAGTAGATTTCCC
GGGACATAATTATATTACTTTTTGCAAAATTACAAGAA Run BLAST on NCBI protein sequence of TCONS_00056266-protein >TCONS_00056266-protein ID=TCONS_00056266-protein|Name=TCONS_00056266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
TLVHDIMKNDRSLEHSTNWNTEKITFPPKMLKGIKIPTQNKLIDDFQYLI
EGESTGDNMLIIVPQIATCERGELEIFVANPLNVERGAILSVVATPITTI
EKPKFTPKKNKTKKKYIYKNNNVIYD Run BLAST on NCBI transcript from alignment at scaffold_27:37337..39074 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056266 ID=TCONS_00056266|Name=TCONS_00056266|organism=Clytia hemisphaerica|type=transcript|length=1738bp|location=Sequence derived from alignment at scaffold_27:37337..39074 (Clytia hemisphaerica)
TTCTTGTAATTTTGCAAAAAGTAATATAATTATGTCCCGGGAAATCTACT
AAGCCctaataaaatcaaataaatctCAATAATGTAGTCTAACTTCTCAA
AAACTTGGGGTTTTCAAAACTTAGTATATCTTTTGTCGAGCTATTTTCaa
agtttataaaaatgtttttgaataatGGTTCGAAATATCTCTGAAAACAC
TGAAAAGTTTTATACGTAGTCATGACCGAAAAGTCTAGTTCTATATTCAA
ACAAAAGGTGTAAGGGAGTCCGAGCATCTATCTTACTTCAGTTTCAGAAC
AGAAAGTCATCTTTAGTCATCCGGATCAGAGGGCAGAGTGCATACAAGTG
AAATAACACGAATGAAATTCCCTGAGATAAGTTTTCTCTTACAATCACCA
TACTAGAATAAAAGTAAAAACTTACATTTTTCCAATGCTTGCTTGTAATT
CGCAAGCGAAAACCTAACTAAAAATCCTAACAAAATAATCCCTATTTATA
CAAAACCCtattcctaaaaataaagataaatgaGTTAGTTACATAACAAA
AATAAGTGTGTTAATGATGTTAGAATctaaattgagaaataaaaatAGTC
ATAAGGAAGAGTCTAACATGAAAgttataaaataagaaattttgagGTCT
TAATcgaagttttagaaaatatataaaagaaaTAATGACCTAGTAAGTGC
TATCTACATAAAAATACTTGATATTGACTTCGAGTGTAGGAAAATTCGGA
AATCGCGTAGAATCTCGTCAAAGTGAATTTAATTTCCTGTTGTGGAGGAg
gaaaagctaaaaatattgtTGATGAGGTCAAAACCTAACCTAATACGACA
CCTTGGGTCTTAGAAGAACTGGTAACCTCACCACTCAGAACTTCAGCTGT
TCTTCGATGTACTTTACTTTGTCTTGCCCATTCCACACAGGTGCTATCTT
GCCCGTATGGTGGTGGTAAAAAACCTGTAGGCAGCTCACATGCCAGAGGA
ATGTGGCCTCGTTCACCTTCTCGTACCATCTCTTCGGTCTGTTTCCCTCC
TCTTGCTCTGTTTCTTCTTCTGCGACGTTGATTCCTAACTTGTTCTCTCA
AGTCGACTACTGGTTTTGGTTCGTGTCTCTTATTTTGTCGTCTTTCTCGG
TGTGGTAGTGCTAGCGATGATAGTAGTGATGATGGTGGTGGTGGGGGTGG
CGACTGTGGTAGTGGTGATGGTAGTGAAGGTGAAGATGGTTGTGAAGGCG
TTAATTTTGTCCCTTGAACTATCCTTACGTCCACTTCCTCCTCCTAGTCA
AATGGTTCTAGACTCTCCTCTAGGTCCAAGATGAATTTGTCTACCATTGT
GTGCATCAGTCGTAAATGACgttattatttttatatatatattttttctt
tgttttgtttttttttggtgtaaattttggtttttcaatTGTTGTGATAG
GGGTGGCCACTACTGAAAGTATGGCTCCTCTTTCTACGTTGAGAGGATTC
GCTACGAATATTTCTAACTCACCTCGTTCACAAGTAGCTATCTGAGGGAC
GATTATCAGCATATTGTCGCCAGTGCTTTCTCCTTCTATGAGGTATTGAA
AGTCGTCAATGAGTTTGTTCTGTGTAGGTATTTTTATACCTTTAAGCATT
TTTGGCGGAAAGGTGATCTTCTCGGTATTCCAATTGGTCGAATGCTCTAG
GCTTCGATCATTCTTCATGATATCATGCACTAAGGTAC Coding sequence (CDS) from alignment at scaffold_27:37337..39074 >TCONS_00056266 ID=TCONS_00056266|Name=TCONS_00056266|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_27:37337..39074 (Clytia hemisphaerica)
TCAGTCGTAAATGACgttattatttttatatatatattttttctttgttt
tgtttttttttggtgtaaattttggtttttcaatTGTTGTGATAGGGGTG
GCCACTACTGAAAGTATGGCTCCTCTTTCTACGTTGAGAGGATTCGCTAC
GAATATTTCTAACTCACCTCGTTCACAAGTAGCTATCTGAGGGACGATTA
TCAGCATATTGTCGCCAGTGCTTTCTCCTTCTATGAGGTATTGAAAGTCG
TCAATGAGTTTGTTCTGTGTAGGTATTTTTATACCTTTAAGCATTTTTGG
CGGAAAGGTGATCTTCTCGGTATTCCAATTGGTCGAATGCTCTAGGCTTC
GATCATTCTTCATGATATCATGCACTAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056266-exon-scaffold_27-1491911889:37337..39074 | TCONS_00056266-exon-scaffold_27-1491911889:37337..39074 | Clytia hemisphaerica | exon |
| TCONS_00056266-exon-scaffold_27-1510915933:37337..39074 | TCONS_00056266-exon-scaffold_27-1510915933:37337..39074 | Clytia hemisphaerica | exon |
| TCONS_00056266-exon-scaffold_27-1575043694:37337..39074 | TCONS_00056266-exon-scaffold_27-1575043694:37337..39074 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:37337..39074 . |
Blast
The following BLAST results are available for this feature:
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