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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056264 ID=TCONS_00056264|Name=TCONS_00056264|organism=Clytia hemisphaerica|type=transcript|length=3054bp
tgcaccccagtgaatttcagatttttcatagCCTACCCCACTACGTGCTC
GACACCCACTggggcacagagacaggggtgtatttgtTGATGATTTAAAG
ATCTTATGCGCACATTTATTTCGTTGTCTGGATTCAATTTGAATAGCCGC
TCTAAGGCCAGAAGTGTCATTGTTACTTTCATCCTCTGACTCAtcttcat
tgttttgatttctacTTTGAAGCTCTGCATTTGTATCGTCATTTTCCTGT
TGCTCATAATCATTTATATTGAGTATCAAGTCAGTTCTGTATCGTTCTAA
GGCATCATCTAACAAACCGGCATATGGTTTGATCAAAGCTCTATTCCTTT
CCATAGTTTCCATAATACCAGGTTCTAGCAGCTTTGCAGTGTAAGTCTTA
CCCACTTCTGCCAACAattcattttcatcatgaaaTGGCAAATATAACAT
CAGGAGATGGTGTGCATAATCTTCTGGGTTCTTGTTTCCATTAGGTTCAT
AAAGGCGAAGGACTAGTGGAACTTTGCGACATTTAAGTTTACCTTTCATT
GATCTTAATTTAATATTCTTCGGATAATTATTTGACGGATGATTAGATTC
TACCAAATTATCTTCAAGCTGATTAGGTTGACAATCATTTTCACTGCATT
CCTCGTAGACAACAGtataaaaccttgaaaactcTGCATAGCACATTTCA
GCAACGGGTTTGTAAATTCCACTTGTATCTTTTGGTCTATCACAATATCT
ATCCAGTATATCCTTTTTGAAGATTAAAGTACTATCTTCGGGTAATTGGC
TGATTTCATCTTCATTGAGACACATTCTGAaccttttttttgggacattg
gTATTTGCAAAGGTTACACCAGGGTAAAGTTTTCGAAGCCATAATTCTGA
CATAGTAAGATAGACAGCTTCTTGCACAGGTACTTCTCGCTTTGAAACAT
ATGCGTGCGCAACAGATTTCATTTGCTCATACTTATCACCACCGTTTTCA
AAGGCGTCTTGAACAGCTTGAGTCATAGCATGTGACACTTCATCTTCACT
TTTAGAAAGATATGCACACATATAAGTTGCAGCTTTGTAATAATTAAACA
CTGGCTGAATATCTAGACTTGCCTGCCATGCTTTGAGTCCTTCAGTAAAG
AAGTCGTTCACAAAACATGCATTTGTATCGCGCTTTAAGTAAATGTGAAA
GTCTTCATCTTCAGACACTGAGAGAGCATATTcatattcactttttggaa
tATCTAATTGAACCAGTACttgattgtaatttttttcatccGGGTTGGAA
AAGTTTCTTTTGTCTGGATTAAGGTTGCTGTTAATATAATCTCTTACTTT
AGATAAGACTTCTTTACTCAATGCAAGTATGGCTTCCTTTTCCTCGTGCG
GCAATTCTAGTGGCAACGGCTCAGATACTATTGTTTTCTCAGAAAAGTAT
TTACCAAAATAAAATCTGCAAGGAGTATTTTTATATTTGCGACATGTTTT
TGAATGGCGATGTAATTGATAAGTTTTTACAAGGTTAAATAAATCAGGAT
CTTCTTCTTGAGATGGTAAGTGAACTTTGATTATCTTATCATGAAACTCT
ATGTATTATATCTTTGTTTCTTTAGTTAGTACTGGTGCATTCATGATCCA
AAGAAATGAATGAATGTTAGGACTACCACGAACTTGGAATTCGACATGGA
TAAGTGGTTTTACCAAGAGGGCCATCTAATAcgattgttttaaaaaaata
cttcaacTCTGTATTGAAAATGTCTAGCCACAAGTACAGGATTGCTATTT
AACAATTCACATCTTTCATGATAGGAAAGATTGTCTATGAATTCATCAGT
AACATTTTGACCCTTAAGTTTGTAAATAATAGAGATCAGCTCATTCCATC
TAAGATCAGCGCAACTCAGGGTTTTAAAGATAGTTGGTGGTCCTAGTTGT
TTAACCATGGCTAAAACttcttgttgaaattttttccaataagCTGGTGT
TCCTCTGATAGTTCTCATGAAGGCAAAAGCCTTATCATTTGCAATAAATT
GCTTCactgtttctttgaaattttgactaaaCATGCACGCACTTAAATTA
GAAGCAGAAACCTTTTTCATTGCTATATTAATTTGATTTGATAGTCTAAG
TTGCTGAAGGACAGAACAGGCATAAAAATGTAGTCTGGGTCAGATGCAAA
GTTTTGCTTTTCATTCAAAAGCCTTTGATTAAAATACTTGGATGGACTAA
GTTTAACATCGCGTTCGACTTTGTAACCAAATTTGCCTTTGGGAAATAAA
TAAGGATGAGCAAGCATCTCACAATTTTCATCGTACAGGATTGAAATAGG
TGTTTCGCCTTCACCAGGTGCCAATGTTAAAATTTTATAATCAACTTCTG
TATCGGTTTGAGCGTCAGACATGAGAGTTGTTTTATTTGCGCTTGAACAG
TGAGCATCAAGTGGATTTGCAGCAGTTTCAAGCTCATCCAAAACAGAATC
ATCAGTTTGTTTTCCAACAGCTTCAGTAATATCCTCAGTAGAGACATTTT
TATCGAATTCATTGTTTATATCAGAATTTGCTTCCTCCATAacattttta
gcattttctacCATTGACTCATCATTAATGTTATTAATATCAATTTGTAT
ATCATGATAGAGAGgattgttttctttcaaataactGAGTATACGTTGAA
TGAAATCAGGCCTGATTGGTTCAAAAACAACATGTCCTCTATattctaat
tttcttttcagtttGACGATGAGCAGACCATTATCACTTGTACTTCTTGG
TAATGTATTAGCAATATCTTCAACATCGATTGGCACATTACAAATAGACC
CTTTAAGTTTTGGAGATTGGCCTTTAGGCATTATTGCGatctttttgaat
aaaattctgCGCGAAATGAGAATCTTTTCAAGCCTGCGAAGAGTATGAAA
TTCTCCTGGTAACTTATCAAGCGAAAGCTTGTTTTTGACAGATTGGCAAG
GCAAGTCTCCTTTCTTAAGCTTGTTATGACATGTCTTGCAAATGTACAAC
TGAC Run BLAST on NCBI protein sequence of TCONS_00056264-protein >TCONS_00056264-protein ID=TCONS_00056264-protein|Name=TCONS_00056264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MCAYLSKSEDEVSHAMTQAVQDAFENGGDKYEQMKSVAHAYVSKREVPVQ
EAVYLTMSELWLRKLYPGVTFANTNVPKKRFRMCLNEDEISQLPEDSTLI
FKKDILDRYCDRPKDTSGIYKPVAEMCYAEFSRFYTVVYEECSENDCQPN
QLEDNLVESNHPSNNYPKNIKLRSMKGKLKCRKVPLVLRLYEPNGNKNPE
DYAHHLLMLYLPFHDENELLAEVGKTYTAKLLEPGIMETMERNRALIKPY
AGLLDDALERYRTDLILNINDYEQQENDDTNAELQSRNQNNEDESEDESN
NDTSGLRAAIQIESRQRNKCAHKIFKSSTNTPLSLCPSGCRARSGVGYEK
SEIHWGA Run BLAST on NCBI transcript from alignment at scaffold_27:22750..25803 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056264 ID=TCONS_00056264|Name=TCONS_00056264|organism=Clytia hemisphaerica|type=transcript|length=3054bp|location=Sequence derived from alignment at scaffold_27:22750..25803 (Clytia hemisphaerica)
GTCAGTTGTACATTTGCAAGACATGTCATAACAAGCTTAAGAAAGGAGAC
TTGCCTTGCCAATCTGTCAAAAACAAGCTTTCGCTTGATAAGTTACCAGG
AGAATTTCATACTCTTCGCAGGCTTGAAAAGATTCTCATTTCGCGcagaa
ttttattcaaaaagatCGCAATAATGCCTAAAGGCCAATCTCCAAAACTT
AAAGGGTCTATTTGTAATGTGCCAATCGATGTTGAAGATATTGCTAATAC
ATTACCAAGAAGTACAAGTGATAATGGTCTGCTCATCGTCaaactgaaaa
gaaaattagaatATAGAGGACATGTTGTTTTTGAACCAATCAGGCCTGAT
TTCATTCAACGTATACTCagttatttgaaagaaaacaatcCTCTCTATCA
TGATATACAAATTGATATTAATAACATTAATGATGAGTCAATGgtagaaa
atgctaaaaatgtTATGGAGGAAGCAAATTCTGATATAAACAATGAATTC
GATAAAAATGTCTCTACTGAGGATATTACTGAAGCTGTTGGAAAACAAAC
TGATGATTCTGTTTTGGATGAGCTTGAAACTGCTGCAAATCCACTTGATG
CTCACTGTTCAAGCGCAAATAAAACAACTCTCATGTCTGACGCTCAAACC
GATACAGAAGTTGATTATAAAATTTTAACATTGGCACCTGGTGAAGGCGA
AACACCTATTTCAATCCTGTACGATGAAAATTGTGAGATGCTTGCTCATC
CTTATTTATTTCCCAAAGGCAAATTTGGTTACAAAGTCGAACGCGATGTT
AAACTTAGTCCATCCAAGTATTTTAATCAAAGGCTTTTGAATGAAAAGCA
AAACTTTGCATCTGACCCAGACTACATTTTTATGCCTGTTCTGTCCTTCA
GCAACTTAGACTATCAAATCAAATTAATATAGCAATGAAAAAGGTTTCTG
CTTCTAATTTAAGTGCGTGCATGtttagtcaaaatttcaaagaaacagtG
AAGCAATTTATTGCAAATGATAAGGCTTTTGCCTTCATGAGAACTATCAG
AGGAACACCAGcttattggaaaaaatttcaacaagaaGTTTTAGCCATGG
TTAAACAACTAGGACCACCAACTATCTTTAAAACCCTGAGTTGCGCTGAT
CTTAGATGGAATGAGCTGATCTCTATTATTTACAAACTTAAGGGTCAAAA
TGTTACTGATGAATTCATAGACAATCTTTCCTATCATGAAAGATGTGAAT
TGTTAAATAGCAATCCTGTACTTGTGGCTAGACATTTTCAATACAGAgtt
gaagtatttttttaaaacaatcgTATTAGATGGCCCTCTTGGTAAAACCA
CTTATCCATGTCGAATTCCAAGTTCGTGGTAGTCCTAACATTCATTCATT
TCTTTGGATCATGAATGCACCAGTACTAACTAAAGAAACAAAGATATAAT
ACATAGAGTTTCATGATAAGATAATCAAAGTTCACTTACCATCTCAAGAA
GAAGATCCTGATTTATTTAACCTTGTAAAAACTTATCAATTACATCGCCA
TTCAAAAACATGTCGCAAATATAAAAATACTCCTTGCAGATTTTATTTTG
GTAAATACTTTTCTGAGAAAACAATAGTATCTGAGCCGTTGCCACTAGAA
TTGCCGCACGAGGAAAAGGAAGCCATACTTGCATTGAGTAAAGAAGTCTT
ATCTAAAGTAAGAGATTATATTAACAGCAACCTTAATCCAGACAAAAGAA
ACTTTTCCAACCCggatgaaaaaaattacaatcaaGTACTGGTTCAATTA
GATattccaaaaagtgaatatgAATATGCTCTCTCAGTGTCTGAAGATGA
AGACTTTCACATTTACTTAAAGCGCGATACAAATGCATGTTTTGTGAACG
ACTTCTTTACTGAAGGACTCAAAGCATGGCAGGCAAGTCTAGATATTCAG
CCAGTGTTTAATTATTACAAAGCTGCAACTTATATGTGTGCATATCTTTC
TAAAAGTGAAGATGAAGTGTCACATGCTATGACTCAAGCTGTTCAAGACG
CCTTTGAAAACGGTGGTGATAAGTATGAGCAAATGAAATCTGTTGCGCAC
GCATATGTTTCAAAGCGAGAAGTACCTGTGCAAGAAGCTGTCTATCTTAC
TATGTCAGAATTATGGCTTCGAAAACTTTACCCTGGTGTAACCTTTGCAA
ATAccaatgtcccaaaaaaaaggtTCAGAATGTGTCTCAATGAAGATGAA
ATCAGCCAATTACCCGAAGATAGTACTTTAATCTTCAAAAAGGATATACT
GGATAGATATTGTGATAGACCAAAAGATACAAGTGGAATTTACAAACCCG
TTGCTGAAATGTGCTATGCAgagttttcaaggttttataCTGTTGTCTAC
GAGGAATGCAGTGAAAATGATTGTCAACCTAATCAGCTTGAAGATAATTT
GGTAGAATCTAATCATCCGTCAAATAATTATCCGAAGAATATTAAATTAA
GATCAATGAAAGGTAAACTTAAATGTCGCAAAGTTCCACTAGTCCTTCGC
CTTTATGAACCTAATGGAAACAAGAACCCAGAAGATTATGCACACCATCT
CCTGATGTTATATTTGCCAtttcatgatgaaaatgaatTGTTGGCAGAAG
TGGGTAAGACTTACACTGCAAAGCTGCTAGAACCTGGTATTATGGAAACT
ATGGAAAGGAATAGAGCTTTGATCAAACCATATGCCGGTTTGTTAGATGA
TGCCTTAGAACGATACAGAACTGACTTGATACTCAATATAAATGATTATG
AGCAACAGGAAAATGACGATACAAATGCAGAGCTTCAAAgtagaaatcaa
aacaatgaagaTGAGTCAGAGGATGAAAGTAACAATGACACTTCTGGCCT
TAGAGCGGCTATTCAAATTGAATCCAGACAACGAAATAAATGTGCGCATA
AGATCTTTAAATCATCAacaaatacacccctgtctctgtgccccAGTGGG
TGTCGAGCACGTAGTGGGGTAGGctatgaaaaatctgaaattcactgggg
tgca Coding sequence (CDS) from alignment at scaffold_27:22750..25803 >TCONS_00056264 ID=TCONS_00056264|Name=TCONS_00056264|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_27:22750..25803 (Clytia hemisphaerica)
ATGTGTGCATATCTTTCTAAAAGTGAAGATGAAGTGTCACATGCTATGAC
TCAAGCTGTTCAAGACGCCTTTGAAAACGGTGGTGATAAGTATGAGCAAA
TGAAATCTGTTGCGCACGCATATGTTTCAAAGCGAGAAGTACCTGTGCAA
GAAGCTGTCTATCTTACTATGTCAGAATTATGGCTTCGAAAACTTTACCC
TGGTGTAACCTTTGCAAATAccaatgtcccaaaaaaaaggtTCAGAATGT
GTCTCAATGAAGATGAAATCAGCCAATTACCCGAAGATAGTACTTTAATC
TTCAAAAAGGATATACTGGATAGATATTGTGATAGACCAAAAGATACAAG
TGGAATTTACAAACCCGTTGCTGAAATGTGCTATGCAgagttttcaaggt
tttataCTGTTGTCTACGAGGAATGCAGTGAAAATGATTGTCAACCTAAT
CAGCTTGAAGATAATTTGGTAGAATCTAATCATCCGTCAAATAATTATCC
GAAGAATATTAAATTAAGATCAATGAAAGGTAAACTTAAATGTCGCAAAG
TTCCACTAGTCCTTCGCCTTTATGAACCTAATGGAAACAAGAACCCAGAA
GATTATGCACACCATCTCCTGATGTTATATTTGCCAtttcatgatgaaaa
tgaatTGTTGGCAGAAGTGGGTAAGACTTACACTGCAAAGCTGCTAGAAC
CTGGTATTATGGAAACTATGGAAAGGAATAGAGCTTTGATCAAACCATAT
GCCGGTTTGTTAGATGATGCCTTAGAACGATACAGAACTGACTTGATACT
CAATATAAATGATTATGAGCAACAGGAAAATGACGATACAAATGCAGAGC
TTCAAAgtagaaatcaaaacaatgaagaTGAGTCAGAGGATGAAAGTAAC
AATGACACTTCTGGCCTTAGAGCGGCTATTCAAATTGAATCCAGACAACG
AAATAAATGTGCGCATAAGATCTTTAAATCATCAacaaatacacccctgt
ctctgtgccccAGTGGGTGTCGAGCACGTAGTGGGGTAGGctatgaaaaa
tctgaaattcactggggtgca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056264-exon-scaffold_27-1491911889:22750..25803 | TCONS_00056264-exon-scaffold_27-1491911889:22750..25803 | Clytia hemisphaerica | exon |
| TCONS_00056264-exon-scaffold_27-1510915933:22750..25803 | TCONS_00056264-exon-scaffold_27-1510915933:22750..25803 | Clytia hemisphaerica | exon |
| TCONS_00056264-exon-scaffold_27-1575043694:22750..25803 | TCONS_00056264-exon-scaffold_27-1575043694:22750..25803 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:22750..25803 . |
Blast
The following BLAST results are available for this feature:
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