TCONS_00056260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056260
Unique NameTCONS_00056260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length832

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056260 ID=TCONS_00056260|Name=TCONS_00056260|organism=Clytia hemisphaerica|type=transcript|length=832bp
CAGGTGGAACAGCATCAGTTGGAACAGAATCAGGTGGATCAGGATCAGGT
GCATCAGGATCAGGTGCATCAGGATCAAGTGGATCGGGAACAGGTGGAAC
AGGATCAGTTGGAACAGAATCAGGTGGATCAGGATCAGGTGGATCAAGAT
CAAGTGGATTGGGAACAGGTGGATCAGGAACAGGTGCATCAGGATCAAGT
GGATCGGGAACAGGTGGAACAGCATCAGTTGGAACAGAATCAGGTGGATC
AGGATCAGGTGGANCAAGATCAAGTGGATTGGGAACAGGTGGATCAGGAA
CAGGTGCATCAGGATCAAGTGGATCGGGAACAGGTGGAACAGCATCAGTT
GGAACAGAATCAGGTGGATCAGGATCAGGTGGATCAGGATCAAGTGGATT
GGGAACAGGCGGATCAGGAACAGGTGGATCAGGATCAAGTGGATCAGGAA
CAGGTGGAACAGCATCAGTTAGAACAGAATCAGGTGGATCAGGACCAGGT
GGATCAGGATCAAGTGCATCAAATGGATCAGGATCAGATGGGTCATAATC
AGATGGATCATAATCAGGTGCATCATAATGAGGTGCATCATAATGAGGTG
GATTAGGATAAAATGGGACAGGAACAGGTGGATTAGGCTCAGGCAGATTA
AATGGCACAGAATCAGGTTGATCAGGATCAAGTTGATCGGGAACAGGCGA
ATCAGGATCAAGTGCATCATAATCAGGTAGATTAGGATAAGGTGTGGCCG
GAACAGGTGGGTCAGGAACAGGTGAATCATAATCAGGTGCATCGCAGTCA
GGTGGATCACAATAAAATTGAACAGGAACAGG
Run BLAST on NCBI

protein sequence of TCONS_00056260-protein

>TCONS_00056260-protein ID=TCONS_00056260-protein|Name=TCONS_00056260-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
PVPVQFYCDPPDCDAPDYDSPVPDPPVPATPYPNLPDYDALDPDSPVPDQ
LDPDQPDSVPFNLPEPNPPVPVPFYPNPPHYDAPHYDAPDYDPSDYDPSD
PDPFDALDPDPPGPDPPDSVLTDAVPPVPDPLDPDPPVPDPPVPNPLDPD
PPDPDPPDSVPTDAVPPVPDPLDPDAPVPDPPVPNPLDLXPPDPDPPDSV
PTDAVPPVPDPLDPDAPVPDPPVPNPLDLDPPDPDPPDSVPTDPVPPVPD
PLDPDAPDPDAPDPDPPDSVPTDAVPP
Run BLAST on NCBI

transcript from alignment at scaffold_27:2..833

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056260 ID=TCONS_00056260|Name=TCONS_00056260|organism=Clytia hemisphaerica|type=transcript|length=832bp|location=Sequence derived from alignment at scaffold_27:2..833 (Clytia hemisphaerica)
CCTGTTCCTGTTCAATTTTATTGTGATCCACCTGACTGCGATGCACCTGA
TTATGATTCACCTGTTCCTGACCCACCTGTTCCGGCCACACCTTATCCTA
ATCTACCTGATTATGATGCACTTGATCCTGATTCGCCTGTTCCCGATCAA
CTTGATCCTGATCAACCTGATTCTGTGCCATTTAATCTGCCTGAGCCTAA
TCCACCTGTTCCTGTCCCATTTTATCCTAATCCACCTCATTATGATGCAC
CTCATTATGATGCACCTGATTATGATCCATCTGATTATGACCCATCTGAT
CCTGATCCATTTGATGCACTTGATCCTGATCCACCTGGTCCTGATCCACC
TGATTCTGTTCTAACTGATGCTGTTCCACCTGTTCCTGATCCACTTGATC
CTGATCCACCTGTTCCTGATCCGCCTGTTCCCAATCCACTTGATCCTGAT
CCACCTGATCCTGATCCACCTGATTCTGTTCCAACTGATGCTGTTCCACC
TGTTCCCGATCCACTTGATCCTGATGCACCTGTTCCTGATCCACCTGTTC
CCAATCCACTTGATCTTGNTCCACCTGATCCTGATCCACCTGATTCTGTT
CCAACTGATGCTGTTCCACCTGTTCCCGATCCACTTGATCCTGATGCACC
TGTTCCTGATCCACCTGTTCCCAATCCACTTGATCTTGATCCACCTGATC
CTGATCCACCTGATTCTGTTCCAACTGATCCTGTTCCACCTGTTCCCGAT
CCACTTGATCCTGATGCACCTGATCCTGATGCACCTGATCCTGATCCACC
TGATTCTGTTCCAACTGATGCTGTTCCACCTG

Coding sequence (CDS) from alignment at scaffold_27:2..833

>TCONS_00056260 ID=TCONS_00056260|Name=TCONS_00056260|organism=Clytia hemisphaerica|type=CDS|length=831bp|location=Sequence derived from alignment at scaffold_27:2..833 (Clytia hemisphaerica)
CCTGTTCCTGTTCAATTTTATTGTGATCCACCTGACTGCGATGCACCTGA
TTATGATTCACCTGTTCCTGACCCACCTGTTCCGGCCACACCTTATCCTA
ATCTACCTGATTATGATGCACTTGATCCTGATTCGCCTGTTCCCGATCAA
CTTGATCCTGATCAACCTGATTCTGTGCCATTTAATCTGCCTGAGCCTAA
TCCACCTGTTCCTGTCCCATTTTATCCTAATCCACCTCATTATGATGCAC
CTCATTATGATGCACCTGATTATGATCCATCTGATTATGACCCATCTGAT
CCTGATCCATTTGATGCACTTGATCCTGATCCACCTGGTCCTGATCCACC
TGATTCTGTTCTAACTGATGCTGTTCCACCTGTTCCTGATCCACTTGATC
CTGATCCACCTGTTCCTGATCCGCCTGTTCCCAATCCACTTGATCCTGAT
CCACCTGATCCTGATCCACCTGATTCTGTTCCAACTGATGCTGTTCCACC
TGTTCCCGATCCACTTGATCCTGATGCACCTGTTCCTGATCCACCTGTTC
CCAATCCACTTGATCTTGNTCCACCTGATCCTGATCCACCTGATTCTGTT
CCAACTGATGCTGTTCCACCTGTTCCCGATCCACTTGATCCTGATGCACC
TGTTCCTGATCCACCTGTTCCCAATCCACTTGATCTTGATCCACCTGATC
CTGATCCACCTGATTCTGTTCCAACTGATCCTGTTCCACCTGTTCCCGAT
CCACTTGATCCTGATGCACCTGATCCTGATGCACCTGATCCTGATCCACC
TGATTCTGTTCCAACTGATGCTGTTCCACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035434XLOC_035434Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056260-exon-scaffold_27-1491911889:2..833TCONS_00056260-exon-scaffold_27-1491911889:2..833Clytia hemisphaericaexon
TCONS_00056260-exon-scaffold_27-1510915933:2..833TCONS_00056260-exon-scaffold_27-1510915933:2..833Clytia hemisphaericaexon
TCONS_00056260-exon-scaffold_27-1575043694:2..833TCONS_00056260-exon-scaffold_27-1575043694:2..833Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056260-proteinTCONS_00056260-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:2..833 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.230387	0.424795	0.219642	0.616877	0.0959756	1.48602	0	1.47912	0.946835	0.983298	0	0	0	0	0.0605355	0	0	0	0	0	0	0.70937	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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