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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056234 ID=TCONS_00056234|Name=TCONS_00056234|organism=Clytia hemisphaerica|type=transcript|length=1922bp
TCAAGTTAAAGCACGTAAAACCATCGGAAGAAAGTGTACCATTCAACAGA
CTTATTCTTCATTAAGTGAAAAAACGGCAGAACCCGTAGTCATACCTGTA
TCTGAACCATTATCAACCAAGAAACCGAAGAGCAGGAGCCCTTATCAGCT
TCGGGAAAAAAGAGCAAATTTTGTCGGTTCTTATGAACAGAGCTTGAAAA
AAGCAATCGCTGCAAGCTTAGTAACCGCAGATGAAGAACAGTTCGGGTTA
AGAGAGATTACAGGGGTCCTAGCACGAAGAAATCTCGGTGTGCATGATGT
GCCAGGAGATGGGAATTGCTTTTTCTATGCAGTTGCCTACCAGCTTTATG
GTTCCATTGTACAAGGATATGATCTCCGAGATAGAGCCTTTCGAGAAGTA
GTTGAACGGGCTgacgattttaaggattttgttGACAATATGACCATAGA
GGAATATGTACATAACTTAGAAACAAACAGGGAATGGGCTGATCACGTGG
CCGTGCAAGCTCTTGCCGAAGCCTTGCATATAAACATTGAGATTGTCAAC
TCGGATGGCACGTCTTCCTTTGTTCCTGATCGCTCCGGGCAGGCAGAAAG
ATCGATAGTTATAGGCCACATTGGTCAACTGCATTATGTGGCAACTTTTC
CAGATTTTTCTGTAGAGCCACCAGCTAACGGTGGTTGTGCAGATGGGCGA
TTTTTACGAAACACATGCTCTGTAGACGGGCCGCTTTTTTGGCTGATTAC
TGTTCTGAAGAATAGTGTTGAGCTACAGAACTTTCTTGAAGAGAACGATA
GTCTACGGGATATATCTGAAGTATTCGAACTTTCGCAAGAATTATTAGGT
ATGGAAAGGGCTAAATTGAGCTGGTATCGGTACGTGGCCGACAACGACAT
TTACAGATTGAGAGATAGCGTAGATTTTCATGGAAGTGAAGCAGCAAACT
TTTTCGAACCCCTTAGCCGCAGCTCCCTTGGTGgcgtttcttttttaaaa
agttgtagATGTGGAGAAAAAGCTCATGTTAAAGGACTCTCAGTTAAAAA
GCTTCCAACGGACTCGCCTTTTAGTAATAGAATCGTAGATGCTATGTTGA
ACGAGCGCACTGGAAAGGTATGCACGACATGTGGCGAAGAGATAACGTCC
AAAATAACAAATATTCCTGCTATGCTGACATTCTACCAAGATTCCATTAA
TTACAACGAGTACATTCCAACAAGATTAACATTCGAGTTACTTGGTCGCA
GCTTTACATTTCTCCTTGCGTTAATTACAATCAAAGAAGGCTTAGACCAT
TTCTCGTGTTATCTGCGATCAAAGGCATGTAGCTGGTTTTACTACGATGG
CTTGAAAAATCCTCTCCTGAAACACATTGGTAAATTAGCTGAAATAAAGG
GAACCATAAATTCCCTCGTTTACATAAGCGCTGATTTCGAGAAAGGTGAA
TGGGAAGAAGGAGCTATTAAAGTTAAAATCCTTGACGAAGATTTGATTTC
ATCAGACGAAGAACTAGAAATAGAGCAACCCACTCAAGAGCCTTCCAGAT
CTGAAGGCGACGCAGTTATCTATCCAATTGATTTTGACATTGAAGGTTTT
AAAGCATTCTTGAATAACAACGAAAATCTGGTTATTGACCTCTTCAAAGT
CGTCATCGTCGTACCAAATAGTCGATTGACGGATCAGCACATTGATTTAA
GATATGACAATTTTGATGAGGCAAGGAATGTGTTCACTCGATTTTGCAAT
AGGGACAATCTTAATGCAATTCCGCTATCTGAAAGGGCAAGTAAACTATC
TCAAGTCTTCATAATCATGATGGACGAGTTTAGGAGGGCTCAGAAGAAAT
TATCATGAAACATAAAATACTTTATTAACATACAAGTTGAATTCAAGTTT
ATTGTTTATCAATCCTTGAAGA Run BLAST on NCBI protein sequence of TCONS_00056234-protein >TCONS_00056234-protein ID=TCONS_00056234-protein|Name=TCONS_00056234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=618bp
QVKARKTIGRKCTIQQTYSSLSEKTAEPVVIPVSEPLSTKKPKSRSPYQL
REKRANFVGSYEQSLKKAIAASLVTADEEQFGLREITGVLARRNLGVHDV
PGDGNCFFYAVAYQLYGSIVQGYDLRDRAFREVVERADDFKDFVDNMTIE
EYVHNLETNREWADHVAVQALAEALHINIEIVNSDGTSSFVPDRSGQAER
SIVIGHIGQLHYVATFPDFSVEPPANGGCADGRFLRNTCSVDGPLFWLIT
VLKNSVELQNFLEENDSLRDISEVFELSQELLGMERAKLSWYRYVADNDI
YRLRDSVDFHGSEAANFFEPLSRSSLGGVSFLKSCRCGEKAHVKGLSVKK
LPTDSPFSNRIVDAMLNERTGKVCTTCGEEITSKITNIPAMLTFYQDSIN
YNEYIPTRLTFELLGRSFTFLLALITIKEGLDHFSCYLRSKACSWFYYDG
LKNPLLKHIGKLAEIKGTINSLVYISADFEKGEWEEGAIKVKILDEDLIS
SDEELEIEQPTQEPSRSEGDAVIYPIDFDIEGFKAFLNNNENLVIDLFKV
VIVVPNSRLTDQHIDLRYDNFDEARNVFTRFCNRDNLNAIPLSERASKLS
QVFIIMMDEFRRAQKKLS Run BLAST on NCBI transcript from alignment at scaffold_269:183276..185197 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056234 ID=TCONS_00056234|Name=TCONS_00056234|organism=Clytia hemisphaerica|type=transcript|length=1922bp|location=Sequence derived from alignment at scaffold_269:183276..185197 (Clytia hemisphaerica)
TCTTCAAGGATTGATAAACAATAAACTTGAATTCAACTTGTATGTTAATA
AAGTATTTTATGTTTCATGATAATTTCTTCTGAGCCCTCCTAAACTCGTC
CATCATGATTATGAAGACTTGAGATAGTTTACTTGCCCTTTCAGATAGCG
GAATTGCATTAAGATTGTCCCTATTGCAAAATCGAGTGAACACATTCCTT
GCCTCATCAAAATTGTCATATCTTAAATCAATGTGCTGATCCGTCAATCG
ACTATTTGGTACGACGATGACGACTTTGAAGAGGTCAATAACCAGATTTT
CGTTGTTATTCAAGAATGCTTTAAAACCTTCAATGTCAAAATCAATTGGA
TAGATAACTGCGTCGCCTTCAGATCTGGAAGGCTCTTGAGTGGGTTGCTC
TATTTCTAGTTCTTCGTCTGATGAAATCAAATCTTCGTCAAGGATTTTAA
CTTTAATAGCTCCTTCTTCCCATTCACCTTTCTCGAAATCAGCGCTTATG
TAAACGAGGGAATTTATGGTTCCCTTTATTTCAGCTAATTTACCAATGTG
TTTCAGGAGAGGATTTTTCAAGCCATCGTAGTAAAACCAGCTACATGCCT
TTGATCGCAGATAACACGAGAAATGGTCTAAGCCTTCTTTGATTGTAATT
AACGCAAGGAGAAATGTAAAGCTGCGACCAAGTAACTCGAATGTTAATCT
TGTTGGAATGTACTCGTTGTAATTAATGGAATCTTGGTAGAATGTCAGCA
TAGCAGGAATATTTGTTATTTTGGACGTTATCTCTTCGCCACATGTCGTG
CATACCTTTCCAGTGCGCTCGTTCAACATAGCATCTACGATTCTATTACT
AAAAGGCGAGTCCGTTGGAAGCTTTTTAACTGAGAGTCCTTTAACATGAG
CTTTTTCTCCACATctacaactttttaaaaaagaaacgcCACCAAGGGAG
CTGCGGCTAAGGGGTTCGAAAAAGTTTGCTGCTTCACTTCCATGAAAATC
TACGCTATCTCTCAATCTGTAAATGTCGTTGTCGGCCACGTACCGATACC
AGCTCAATTTAGCCCTTTCCATACCTAATAATTCTTGCGAAAGTTCGAAT
ACTTCAGATATATCCCGTAGACTATCGTTCTCTTCAAGAAAGTTCTGTAG
CTCAACACTATTCTTCAGAACAGTAATCAGCCAAAAAAGCGGCCCGTCTA
CAGAGCATGTGTTTCGTAAAAATCGCCCATCTGCACAACCACCGTTAGCT
GGTGGCTCTACAGAAAAATCTGGAAAAGTTGCCACATAATGCAGTTGACC
AATGTGGCCTATAACTATCGATCTTTCTGCCTGCCCGGAGCGATCAGGAA
CAAAGGAAGACGTGCCATCCGAGTTGACAATCTCAATGTTTATATGCAAG
GCTTCGGCAAGAGCTTGCACGGCCACGTGATCAGCCCATTCCCTGTTTGT
TTCTAAGTTATGTACATATTCCTCTATGGTCATATTGTCaacaaaatcct
taaaatcgtcAGCCCGTTCAACTACTTCTCGAAAGGCTCTATCTCGGAGA
TCATATCCTTGTACAATGGAACCATAAAGCTGGTAGGCAACTGCATAGAA
AAAGCAATTCCCATCTCCTGGCACATCATGCACACCGAGATTTCTTCGTG
CTAGGACCCCTGTAATCTCTCTTAACCCGAACTGTTCTTCATCTGCGGTT
ACTAAGCTTGCAGCGATTGCTTTTTTCAAGCTCTGTTCATAAGAACCGAC
AAAATTTGCTCTTTTTTCCCGAAGCTGATAAGGGCTCCTGCTCTTCGGTT
TCTTGGTTGATAATGGTTCAGATACAGGTATGACTACGGGTTCTGCCGTT
TTTTCACTTAATGAAGAATAAGTCTGTTGAATGGTACACTTTCTTCCGAT
GGTTTTACGTGCTTTAACTTGA Coding sequence (CDS) from alignment at scaffold_269:183276..185197 >TCONS_00056234 ID=TCONS_00056234|Name=TCONS_00056234|organism=Clytia hemisphaerica|type=CDS|length=1857bp|location=Sequence derived from alignment at scaffold_269:183276..185197 (Clytia hemisphaerica)
TCATGATAATTTCTTCTGAGCCCTCCTAAACTCGTCCATCATGATTATGA
AGACTTGAGATAGTTTACTTGCCCTTTCAGATAGCGGAATTGCATTAAGA
TTGTCCCTATTGCAAAATCGAGTGAACACATTCCTTGCCTCATCAAAATT
GTCATATCTTAAATCAATGTGCTGATCCGTCAATCGACTATTTGGTACGA
CGATGACGACTTTGAAGAGGTCAATAACCAGATTTTCGTTGTTATTCAAG
AATGCTTTAAAACCTTCAATGTCAAAATCAATTGGATAGATAACTGCGTC
GCCTTCAGATCTGGAAGGCTCTTGAGTGGGTTGCTCTATTTCTAGTTCTT
CGTCTGATGAAATCAAATCTTCGTCAAGGATTTTAACTTTAATAGCTCCT
TCTTCCCATTCACCTTTCTCGAAATCAGCGCTTATGTAAACGAGGGAATT
TATGGTTCCCTTTATTTCAGCTAATTTACCAATGTGTTTCAGGAGAGGAT
TTTTCAAGCCATCGTAGTAAAACCAGCTACATGCCTTTGATCGCAGATAA
CACGAGAAATGGTCTAAGCCTTCTTTGATTGTAATTAACGCAAGGAGAAA
TGTAAAGCTGCGACCAAGTAACTCGAATGTTAATCTTGTTGGAATGTACT
CGTTGTAATTAATGGAATCTTGGTAGAATGTCAGCATAGCAGGAATATTT
GTTATTTTGGACGTTATCTCTTCGCCACATGTCGTGCATACCTTTCCAGT
GCGCTCGTTCAACATAGCATCTACGATTCTATTACTAAAAGGCGAGTCCG
TTGGAAGCTTTTTAACTGAGAGTCCTTTAACATGAGCTTTTTCTCCACAT
ctacaactttttaaaaaagaaacgcCACCAAGGGAGCTGCGGCTAAGGGG
TTCGAAAAAGTTTGCTGCTTCACTTCCATGAAAATCTACGCTATCTCTCA
ATCTGTAAATGTCGTTGTCGGCCACGTACCGATACCAGCTCAATTTAGCC
CTTTCCATACCTAATAATTCTTGCGAAAGTTCGAATACTTCAGATATATC
CCGTAGACTATCGTTCTCTTCAAGAAAGTTCTGTAGCTCAACACTATTCT
TCAGAACAGTAATCAGCCAAAAAAGCGGCCCGTCTACAGAGCATGTGTTT
CGTAAAAATCGCCCATCTGCACAACCACCGTTAGCTGGTGGCTCTACAGA
AAAATCTGGAAAAGTTGCCACATAATGCAGTTGACCAATGTGGCCTATAA
CTATCGATCTTTCTGCCTGCCCGGAGCGATCAGGAACAAAGGAAGACGTG
CCATCCGAGTTGACAATCTCAATGTTTATATGCAAGGCTTCGGCAAGAGC
TTGCACGGCCACGTGATCAGCCCATTCCCTGTTTGTTTCTAAGTTATGTA
CATATTCCTCTATGGTCATATTGTCaacaaaatccttaaaatcgtcAGCC
CGTTCAACTACTTCTCGAAAGGCTCTATCTCGGAGATCATATCCTTGTAC
AATGGAACCATAAAGCTGGTAGGCAACTGCATAGAAAAAGCAATTCCCAT
CTCCTGGCACATCATGCACACCGAGATTTCTTCGTGCTAGGACCCCTGTA
ATCTCTCTTAACCCGAACTGTTCTTCATCTGCGGTTACTAAGCTTGCAGC
GATTGCTTTTTTCAAGCTCTGTTCATAAGAACCGACAAAATTTGCTCTTT
TTTCCCGAAGCTGATAAGGGCTCCTGCTCTTCGGTTTCTTGGTTGATAAT
GGTTCAGATACAGGTATGACTACGGGTTCTGCCGTTTTTTCACTTAATGA
AGAATAAGTCTGTTGAATGGTACACTTTCTTCCGATGGTTTTACGTGCTT
TAACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056234-exon-scaffold_269-1491911889:183276..185197 | TCONS_00056234-exon-scaffold_269-1491911889:183276..185197 | Clytia hemisphaerica | exon |
| TCONS_00056234-exon-scaffold_269-1510915933:183276..185197 | TCONS_00056234-exon-scaffold_269-1510915933:183276..185197 | Clytia hemisphaerica | exon |
| TCONS_00056234-exon-scaffold_269-1575043694:183276..185197 | TCONS_00056234-exon-scaffold_269-1575043694:183276..185197 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:183276..185197 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR003323 | OTU_dom |
Blast
The following BLAST results are available for this feature:
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