TCONS_00056230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056230
Unique NameTCONS_00056230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056230 ID=TCONS_00056230|Name=TCONS_00056230|organism=Clytia hemisphaerica|type=transcript|length=263bp
CTCGAAAACTGtacagattacagataaaaagaCCGGAACACGCGCCATTA
TGCGTAAATTGTATGATCGTTCGATGAGTTGATGGACAGAAAGTGCTTTG
TCTTTACGTTCACCGAAAAAGTTCTGAATATATTTCCAGATGTTCTCATC
GTCAAACCCACAAACTTCAATGTTCTTTCGATTGGAATTgataggaattt
ctttcttcaGATATTCGACAGCTTTTGGTCTTCCGCATGCGATGACTTTA
TGTTTTGGGAGCC
Run BLAST on NCBI

transcript from alignment at scaffold_269:154701..154963

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056230 ID=TCONS_00056230|Name=TCONS_00056230|organism=Clytia hemisphaerica|type=transcript|length=263bp|location=Sequence derived from alignment at scaffold_269:154701..154963 (Clytia hemisphaerica)
GGCTCCCAAAACATAAAGTCATCGCATGCGGAAGACCAAAAGCTGTCGAA
TATCtgaagaaagaaattcctatcAATTCCAATCGAAAGAACATTGAAGT
TTGTGGGTTTGACGATGAGAACATCTGGAAATATATTCAGAACTTTTTCG
GTGAACGTAAAGACAAAGCACTTTCTGTCCATCAACTCATCGAACGATCA
TACAATTTACGCATAATGGCGCGTGTTCCGGtctttttatctgtaatctg
taCAGTTTTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035411XLOC_035411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056230-exon-scaffold_269-1491911889:154701..154963TCONS_00056230-exon-scaffold_269-1491911889:154701..154963Clytia hemisphaericaexon
TCONS_00056230-exon-scaffold_269-1510915933:154701..154963TCONS_00056230-exon-scaffold_269-1510915933:154701..154963Clytia hemisphaericaexon
TCONS_00056230-exon-scaffold_269-1575043694:154701..154963TCONS_00056230-exon-scaffold_269-1575043694:154701..154963Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:154701..154963 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.69255	0	0.806804	3.7766	1.78674	1.90564	0	1.25382	5.0083	8.79211	6.39482	4.71715	2.46154	1.62635	3.45032	8.37675	0.983274	3.07494	0.719527	0.80077	8.08516	2.40527	5.14471	1.69616	0.696522	0.709646
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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