TCONS_00056219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056219
Unique NameTCONS_00056219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056219 ID=TCONS_00056219|Name=TCONS_00056219|organism=Clytia hemisphaerica|type=transcript|length=318bp
GGCACTGAAAGTCTACAATCAACAAGTTTCAAAGCTTAATCGTCATCCAG
AGGACAAGTCAGATGTATTAGAATCCCAACGTAAGCTTCAAAGACTTGGA
CACGTTGATTACGTCAATAATCTTCCAAAGGACCAGCAAGATCAACTGTC
ATCAAACGCTATCCAAAACTACATTCCATGGCGGGCTGTATGGAAACTCA
GCTCGCTAACAACGCCATGCAGAATTGTGTTCGATGCATCACAGCCAACA
AGTAGCGGATATAGCTTAAACTCAATCCTCGCCAAAGGAACCAATGGAAT
GAACAAATTGGTGGAAAT
Run BLAST on NCBI

protein sequence of TCONS_00056219-protein

>TCONS_00056219-protein ID=TCONS_00056219-protein|Name=TCONS_00056219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
ALKVYNQQVSKLNRHPEDKSDVLESQRKLQRLGHVDYVNNLPKDQQDQLS
SNAIQNYIPWRAVWKLSSLTTPCRIVFDASQPTSSGYSLNSILAKGTNGM
NKLVE
Run BLAST on NCBI

transcript from alignment at scaffold_269:8177..8494

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056219 ID=TCONS_00056219|Name=TCONS_00056219|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at scaffold_269:8177..8494 (Clytia hemisphaerica)
ATTTCCACCAATTTGTTCATTCCATTGGTTCCTTTGGCGAGGATTGAGTT
TAAGCTATATCCGCTACTTGTTGGCTGTGATGCATCGAACACAATTCTGC
ATGGCGTTGTTAGCGAGCTGAGTTTCCATACAGCCCGCCATGGAATGTAG
TTTTGGATAGCGTTTGATGACAGTTGATCTTGCTGGTCCTTTGGAAGATT
ATTGACGTAATCAACGTGTCCAAGTCTTTGAAGCTTACGTTGGGATTCTA
ATACATCTGACTTGTCCTCTGGATGACGATTAAGCTTTGAAACTTGTTGA
TTGTAGACTTTCAGTGCC

Coding sequence (CDS) from alignment at scaffold_269:8177..8494

>TCONS_00056219 ID=TCONS_00056219|Name=TCONS_00056219|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_269:8177..8494 (Clytia hemisphaerica)
TTCCACCAATTTGTTCATTCCATTGGTTCCTTTGGCGAGGATTGAGTTTA
AGCTATATCCGCTACTTGTTGGCTGTGATGCATCGAACACAATTCTGCAT
GGCGTTGTTAGCGAGCTGAGTTTCCATACAGCCCGCCATGGAATGTAGTT
TTGGATAGCGTTTGATGACAGTTGATCTTGCTGGTCCTTTGGAAGATTAT
TGACGTAATCAACGTGTCCAAGTCTTTGAAGCTTACGTTGGGATTCTAAT
ACATCTGACTTGTCCTCTGGATGACGATTAAGCTTTGAAACTTGTTGATT
GTAGACTTTCAGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035400XLOC_035400Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056219-proteinTCONS_00056219-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056219-exon-scaffold_269-1491911889:8177..8494TCONS_00056219-exon-scaffold_269-1491911889:8177..8494Clytia hemisphaericaexon
TCONS_00056219-exon-scaffold_269-1510915933:8177..8494TCONS_00056219-exon-scaffold_269-1510915933:8177..8494Clytia hemisphaericaexon
TCONS_00056219-exon-scaffold_269-1575043694:8177..8494TCONS_00056219-exon-scaffold_269-1575043694:8177..8494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:8177..8494 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.546278	0.747984	0	1.31693	2.20079	2.27161	1.85758	3.68264	1.64001	1.48916	1.64853	2.59191	2.60564	4.62991	0	0.44437	0	0	1.17668	3.93441	0	0	0.22539	0	1.27278	4.27665	0	0	0.56661	0.655003
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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