TCONS_00056218 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056218
Unique NameTCONS_00056218
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056218 ID=TCONS_00056218|Name=TCONS_00056218|organism=Clytia hemisphaerica|type=transcript|length=392bp
CGTAACCGaattaaattttgccaaaaagcaTCGTGGTAAAAAGCCAACCA
TTCAAGTCGGCGTAATACCATCAAAGCTCACTCGACGTCACCCATCCATT
GACACCCATCACCGCTTCATTCAAGCTTGATCTTCGCAACCTTGTCGATC
TTGGACTCAGTTGGGATGATGCCATTCCTGACAATCTCAGACCGATCTGG
GAAGATAACTTTACCATGATGCAAGAAATCAAGACCGTCCGGTATCAAAG
AACCATCGTTCCTCCAGATGCAGTCAATCTGAACATAAACACTGTCGATT
TTGGGGATGCTAGCAAACAGATGGCAGCTGTCGCTATCTACGCACGAATG
CTCCGTAAAAATGGCGAATATTCCTCGCAACTCATCTTCTCN
Run BLAST on NCBI

transcript from alignment at scaffold_269:6203..6594

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056218 ID=TCONS_00056218|Name=TCONS_00056218|organism=Clytia hemisphaerica|type=transcript|length=392bp|location=Sequence derived from alignment at scaffold_269:6203..6594 (Clytia hemisphaerica)
NGAGAAGATGAGTTGCGAGGAATATTCGCCATTTTTACGGAGCATTCGTG
CGTAGATAGCGACAGCTGCCATCTGTTTGCTAGCATCCCCAAAATCGACA
GTGTTTATGTTCAGATTGACTGCATCTGGAGGAACGATGGTTCTTTGATA
CCGGACGGTCTTGATTTCTTGCATCATGGTAAAGTTATCTTCCCAGATCG
GTCTGAGATTGTCAGGAATGGCATCATCCCAACTGAGTCCAAGATCGACA
AGGTTGCGAAGATCAAGCTTGAATGAAGCGGTGATGGGTGTCAATGGATG
GGTGACGTCGAGTGAGCTTTGATGGTATTACGCCGACTTGAATGGTTGGC
TTTTTACCACGAtgctttttggcaaaatttaattCGGTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035399XLOC_035399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056218-exon-scaffold_269-1491911889:6203..6594TCONS_00056218-exon-scaffold_269-1491911889:6203..6594Clytia hemisphaericaexon
TCONS_00056218-exon-scaffold_269-1510915933:6203..6594TCONS_00056218-exon-scaffold_269-1510915933:6203..6594Clytia hemisphaericaexon
TCONS_00056218-exon-scaffold_269-1575043694:6203..6594TCONS_00056218-exon-scaffold_269-1575043694:6203..6594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:6203..6594 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.29575	2.07956	1.31704	1.50327	4.70594	1.85935	3.98796	3.73348	2.61389	3.03537	1.76772	2.88908	2.49873	2.4533	0.330253	0.118137	0	0.745846	2.26694	5.70701	0	0.822849	1.11142	0.606267	2.91406	4.82992	1.32915	0.567403	0.645533	0.876928
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056218 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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