TCONS_00056154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056154
Unique NameTCONS_00056154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056154 ID=TCONS_00056154|Name=TCONS_00056154|organism=Clytia hemisphaerica|type=transcript|length=871bp
ataaaattcaaaaagaaaggtttaaaatcaaatttagaTCAGGATTGACA
GAAAAAAACATCGTTGTGAACTTTCTGATGAGCAATCAGTTACACACCAC
AACCTTGGAGTAGCATTCTTGTTCAAACACTTTGAAGCAACATGGGTAAA
GACTCTGATAACGAATTCTACTATCCGGATGGAAAAGATAAATATGGAAA
GAATAAGAGAGGTGTTGATTGGAAGAAAATTGGAACAAGAGCTGTGATAt
tgatcttgatttttttggtgtTGAGATATTTCTATGGAGGGAAGCCGGAA
ACTCCAAGGATAAAGAAGGGAACCTATAATGTAGCAGACTTTAAAGATAA
AGTTGGTGAACCTATCTTCGATCCATCAAAACTGAAACCACTCAAAAGAT
ATGAAGATCCTGAAGGTTGTCCACCGTTTGTGGATTGTGAACACCTGACG
TGCAATCAAGGCGAAGACCGAGTTATTCGGAAAGATGAGAATGGTTGTAG
GATATGTACATGCATTATTCATAACAGTTTATAAAATGCCACCTGTTCGT
CTGCAAATATCGAGGGAAAAGAATCATTATTTTGCGTGACGAGTTTTATA
GTGGAGGGATTCGTTTGGAGCATTTTACGCTGCTGAAAGATAACTTTTga
atatattgaatattttgtaaattttaataagaaaaatcttttatgtAAAA
ATTATTGGTACATCTCGATCTCGATCTCGCGGGTGCGAGTCAGGTCAGCG
GTAAACAGGAGATctatgtatttttataatctgatacaTACAGAACAGAT
TTGAGCTGTGGAAAATTACAGTggaaaattcgaatttagcgctgtcctga
CGTTAattaaaaccaaatttc
Run BLAST on NCBI

protein sequence of TCONS_00056154-protein

>TCONS_00056154-protein ID=TCONS_00056154-protein|Name=TCONS_00056154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MGKDSDNEFYYPDGKDKYGKNKRGVDWKKIGTRAVILILIFLVLRYFYGG
KPETPRIKKGTYNVADFKDKVGEPIFDPSKLKPLKRYEDPEGCPPFVDCE
HLTCNQGEDRVIRKDENGCRICTCIIHNSL
Run BLAST on NCBI

transcript from alignment at scaffold_268:143730..146991+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056154 ID=TCONS_00056154|Name=TCONS_00056154|organism=Clytia hemisphaerica|type=transcript|length=3262bp|location=Sequence derived from alignment at scaffold_268:143730..146991+ (Clytia hemisphaerica)
ataaaattcaaaaagaaaggtttaaaatcaaatttagaTCAGGATTGACA
GAAAAAAACATCGTTGTGAACTTTCTGATGAGCAATCAGTTACACACCAC
AACCTTGGAGTAGCATTCTTGTTCAAACACTTTGAAGCAACATGGGTAAA
GACTCTGATAACGAATTCTACTATCCGGATGGAAAAGATAAATATGGAAA
GAATAAGAGAGGTGTTGATTGGAAGAAAATTGGAACAAGAGCTGTAAGTA
AAATCAATATCATTCACAAGtgggtcaagttttcaaatggtGATACCTCT
ActtcaaaattatatttataccCAGAGATTTATTATGTTTCTTGAATAAA
gccttttttacacttttacaTGGATATATGTCAAACCTCCTAGTCCGAAA
CTAAAGCTtcagatatttttttaaattctgctTGTGATGAGGGGCAGGAT
GACGATTTTGTGTCGTCCACAATCATCTTCAAAAGCTTTTTGACTTCTTT
TCTTTgtgctatttcaagccttaaaaaggtttttttgcttatttgataac
gcttttggccaaaaatatcctgcaaccgccaaattaaattcccgtcaaat
ttacTTTATCCAGctatccgccaaaatttcttcctttaaggtattcaaTA
GCTAATAAAGGGACTGTGTACGAATTTGGTCCGATGGTATATTAATCATA
TATTCTCCTTAATTTCCAGGTGATAttgatcttgatttttttggtgtTGA
GATATTTCTATGGAGGGAAGCCGGAAACTCCAAGGATAAAGAAGGGAACC
TATAATGTAGCAGACTTTAAAGATAAAGTTGGTGAACCTATCTTCGATCC
ATCAAAACTGAAACCACTCAAAAGATATGAAGATCCTGAAGGTCAGTCAG
TGTGCCTAGAGGCCTTTCTTCACAgacttttttcgaaaatgtttaaATTG
ATATCAACGATTTGTTAGCAGTCAAGAATACATTTGATTAAAGACTTGAA
CTTCTCCTATTTCGATTTCCTTTACGGTTTCAAtcatacaaaaaaaaaca
aaataattcgtTTAATTGGCATCATTGCATCGTCCctcttagcctggata
tccaagctcaaaattttagaaaaaacaaaatttacctcaacatacaaagt
tctaaattatagagcttggtcttcctaaagaatgaaagtgcaaacccatg
tttccaaaactttcctagccaacccagggcaggcCAACCAAAAATTAGTA
AAAAGGAGCCTTACAAGATCTGAAGCCATTTAAAACATCtaaagattaca
ccagagtccttaaacaagtttgcatgtatcaccatgaccaaccatgtttt
cttggaaaatgaatttgcctctgttttcttctttttcatgtttttttact
CAGGTGAGTCAAGGCAAGTctcaaacatattttgcgtgacgcgcaccgct
tcccattgttccttaactttcgtatatagctTAAAAGAAGCGTATCAAtg
agaggatttcggaaagtgctgggccgaaaatttaaattaagccaatctca
agatatcggccaaaaactgattttgacgttatgaaatacgtcgaaaaaac
acgtcaaaaagacgaGTTAAATGACGTCGTTTTttaaaacagcgataact
tcgattCCATTGCTAcaattaacaccaaattttgactggagacgttgatt
gttgattttgaaataatgcatgaaaaaaatttgaaattttttgatgacgt
catcattatttgtcgtattttagtttttaccgacaataaatgacgtcatc
caaaaactttgaaaatttctcaacaaatattttggaatcgttaatctacg
tctccagtcaaaatttggtgttgattgcaaTAATAGACTttaagttatcg
ctgttttcaataatgacgtcatttgaatcttacgtatgacgtgttttttc
gatgtatttcataacgtcaaaatcagtttttggccgatatcttgagattg
gcttcatttaaattttcggcccagcactttccgaaatcctctagttaata
cgcttcttttgagctatatacgaaagttaaggaacaatgggaagcggtgc
ggtcacgcaaaatatgtttgagacttgccttaactcacctggtaacagaa
agctctatcttcactagcaagtggaggactatcctattttttcttcagga
ttgctccgcgccgtgtagattggtccttacggctttagtgaagtgagcgc
aagcaagcgaactgcattctcatatgagaatgcaaatcgctctagggaga
ccaggctgtaaaccagaacataaaatatcaaaaactgaACTGTGAaatgg
tttacagcctggatatccaggctacgtCCCTCTTAGTGAAAATTTCATAT
CTACAGAAGGGACTTTCTTTCTATTATCCACTCTCTTACCATTACTAGGT
TGTCCACCGTTTGTGGATTGTGAACACCTGACGTGCAATCAAGGCGAAGA
TCGAGTTATTCGGNCCCTCTTAGTGAAAATTTCATATCTACAGAAGGGAC
TTTCTTTCTATTATCCACTCTCTTACCATTACTAGGTTGTCCACCGTTTG
TGGATTGTGAACACCTGACGTGCAATCAAGGCGAAGACCGAGTTATTCGG
AAAGATGAGAATGGTTGTAGGATATGTACATGGTAAGATTCCAACGTTCA
TTTCCCAGAAATTGGGTACCATTAGCTTCATTCTTTCAGTACTTTTCTTC
TAAGTCAAATAtttattcaaacaaaatttgacgCACTAGAGAGATAGATC
TCAGAGAGAATCATTATGAGATAGTTTTAATAGCCGGCTTTGGGACATGT
GACCAATAAGAATACCAAGTGTTGTAAACCTACTTTTTTCTTATCTATTT
TAGCATTATTCATAACAGTTTATAAAATGCCACCTGTTCGTCTGCAAATA
TCGAGGGAAAAGAATCATTATTTTGCGTGACGAGTTTTATAGTGGAGGGA
TTCGTTTGGAGCATTTTACGCTGCTGAAAGATAACTTTTgaatatattga
atattttgtaaattttaataagaaaaatcttttatgtAAAAATTATTGGT
ACATCTCGATCTCGATCTCGCGGGTGCGAGTCAGGTCAGCGGTAAACAGG
AGATctatgtatttttataatctgatacaTACAGAACAGATTTGAGCTGT
GGAAAATTACAGTggaaaattcgaatttagcgctgtcctgaCGTTAatta
aaaccaaatttc

Coding sequence (CDS) from alignment at scaffold_268:143730..146991+

>TCONS_00056154 ID=TCONS_00056154|Name=TCONS_00056154|organism=Clytia hemisphaerica|type=CDS|length=1965bp|location=Sequence derived from alignment at scaffold_268:143730..146991+ (Clytia hemisphaerica)
ATGGGTAAAGACTCTGATAACGAATTCTACTATCCGGATGGAAAAGATAA
ATATGGAAAGAATAAGAGAGGTGTTGATTGGAAGAAAATTGGAACAAGAG
CTGTGATAttgatcttgatttttttggtgtTGAGATATTTCTATGGAGGG
AAGCCGGAAACTCCAAGGATAAAGAAGGGAACCTATAATGTAGCAGACTT
TAAAGATAAAGTTGGTGAACCTATCTTCGATCCATCAAAACTGAAACCAC
TCAAAAGATATGAAGATCCTGAAGGTTGTCCACCGTTTGTGGATTGTGAA
CACCTGACGTGCAATCAAGGCGAAGACCGAGTTATTCGGAAAGATGAGAA
TGGTTGTAGGATATGTACATGCATTATTCATAACAGTTTATAAATGGGTA
AAGACTCTGATAACGAATTCTACTATCCGGATGGAAAAGATAAATATGGA
AAGAATAAGAGAGGTGTTGATTGGAAGAAAATTGGAACAAGAGCTGTGAT
AttgatcttgatttttttggtgtTGAGATATTTCTATGGAGGGAAGCCGG
AAACTCCAAGGATAAAGAAGGGAACCTATAATGTAGCAGACTTTAAAGAT
AAAGTTGGTGAACCTATCTTCGATCCATCAAAACTGAAACCACTCAAAAG
ATATGAAGATCCTGAAGGTTGTCCACCGTTTGTGGATTGTGAACACCTGA
CGTGCAATCAAGGCGAAGACCGAGTTATTCGGAAAGATGAGAATGGTTGT
AGGATATGTACATGCATTATTCATAACAGTTTATAAATGGGTAAAGACTC
TGATAACGAATTCTACTATCCGGATGGAAAAGATAAATATGGAAAGAATA
AGAGAGGTGTTGATTGGAAGAAAATTGGAACAAGAGCTGTGATAttgatc
ttgatttttttggtgtTGAGATATTTCTATGGAGGGAAGCCGGAAACTCC
AAGGATAAAGAAGGGAACCTATAATGTAGCAGACTTTAAAGATAAAGTTG
GTGAACCTATCTTCGATCCATCAAAACTGAAACCACTCAAAAGATATGAA
GATCCTGAAGGTTGTCCACCGTTTGTGGATTGTGAACACCTGACGTGCAA
TCAAGGCGAAGACCGAGTTATTCGGAAAGATGAGAATGGTTGTAGGATAT
GTACATGCATTATTCATAACAGTTTATAAATGGGTAAAGACTCTGATAAC
GAATTCTACTATCCGGATGGAAAAGATAAATATGGAAAGAATAAGAGAGG
TGTTGATTGGAAGAAAATTGGAACAAGAGCTGTGATAttgatcttgattt
ttttggtgtTGAGATATTTCTATGGAGGGAAGCCGGAAACTCCAAGGATA
AAGAAGGGAACCTATAATGTAGCAGACTTTAAAGATAAAGTTGGTGAACC
TATCTTCGATCCATCAAAACTGAAACCACTCAAAAGATATGAAGATCCTG
AAGGTTGTCCACCGTTTGTGGATTGTGAACACCTGACGTGCAATCAAGGC
GAAGACCGAGTTATTCGGAAAGATGAGAATGGTTGTAGGATATGTACATG
CATTATTCATAACAGTTTATAAATGGGTAAAGACTCTGATAACGAATTCT
ACTATCCGGATGGAAAAGATAAATATGGAAAGAATAAGAGAGGTGTTGAT
TGGAAGAAAATTGGAACAAGAGCTGTGATAttgatcttgatttttttggt
gtTGAGATATTTCTATGGAGGGAAGCCGGAAACTCCAAGGATAAAGAAGG
GAACCTATAATGTAGCAGACTTTAAAGATAAAGTTGGTGAACCTATCTTC
GATCCATCAAAACTGAAACCACTCAAAAGATATGAAGATCCTGAAGGTTG
TCCACCGTTTGTGGATTGTGAACACCTGACGTGCAATCAAGGCGAAGACC
GAGTTATTCGGAAAGATGAGAATGGTTGTAGGATATGTACATGCATTATT
CATAACAGTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035353XLOC_035353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056154-exon-scaffold_268-1491911889:143730..143972TCONS_00056154-exon-scaffold_268-1491911889:143730..143972Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1510915933:143730..143972TCONS_00056154-exon-scaffold_268-1510915933:143730..143972Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1575043694:143730..143972TCONS_00056154-exon-scaffold_268-1575043694:143730..143972Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1491911889:144449..144620TCONS_00056154-exon-scaffold_268-1491911889:144449..144620Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1510915933:144449..144620TCONS_00056154-exon-scaffold_268-1510915933:144449..144620Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1575043694:144449..144620TCONS_00056154-exon-scaffold_268-1575043694:144449..144620Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1491911889:146178..146222TCONS_00056154-exon-scaffold_268-1491911889:146178..146222Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1510915933:146178..146222TCONS_00056154-exon-scaffold_268-1510915933:146178..146222Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1575043694:146178..146222TCONS_00056154-exon-scaffold_268-1575043694:146178..146222Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1491911889:146360..146411TCONS_00056154-exon-scaffold_268-1491911889:146360..146411Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1510915933:146360..146411TCONS_00056154-exon-scaffold_268-1510915933:146360..146411Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1575043694:146360..146411TCONS_00056154-exon-scaffold_268-1575043694:146360..146411Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1491911889:146633..146991TCONS_00056154-exon-scaffold_268-1491911889:146633..146991Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1510915933:146633..146991TCONS_00056154-exon-scaffold_268-1510915933:146633..146991Clytia hemisphaericaexon
TCONS_00056154-exon-scaffold_268-1575043694:146633..146991TCONS_00056154-exon-scaffold_268-1575043694:146633..146991Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056154-proteinTCONS_00056154-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:143730..146991 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26896	1.7098	1.15291	1.18731	0.325222	0.142775	0.0344503	0.032252	0.0903215	0.307664	0.0271478	0.0535377	18.0512	14.1371	1.73458	1.24098	1.30751	0.577299	28.4823	48.1896	0.336801	0.341196	0.798814	0.425006	0.489082	0.0513523	0.0734849	0.15685	0.327155	0.333319
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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