TCONS_00056112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056112
Unique NameTCONS_00056112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056112 ID=TCONS_00056112|Name=TCONS_00056112|organism=Clytia hemisphaerica|type=transcript|length=497bp
caaaaataatctttaacatAACCAGCTcctaaagataaaaaaaaatgtta
cacTTACATTGTGAAAATAAGTCGATGAAGGTTGAAATAACTTCACTTGT
CTACTTGTCTacttacaaagaaaatttgaccTCTATATATACTAGGTCCC
TACCCCTAAAATAAATGTTAATTGCCTGATTACCTAATGGGTTGGGGTTA
ATGGCTTAGCCTTAgcatttcaaaataacaaagtCGTAAAACAAATATAA
AGAAGGAAGGTTTGAAAGTAGTTAAAGGGGTCAAACAAAAGGGGTAATTG
CAAACAGCCTTCTGAGGAGCAAATATGATTTGATATTGACTTTAATTATG
CGAAAATGGGGAAATGGGAAGGGGATAAATGGCTTCCTGGAATTATGTAA
CCTCGGGTGTCTGTTGAGGGACTtttgagggtgtgaaaaaggcaTCTTAA
TGGGTCACACATACTAGGCACCCATTTTGCTCCCCTCACGGGTTTTA
Run BLAST on NCBI

transcript from alignment at scaffold_267:59183..59679

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056112 ID=TCONS_00056112|Name=TCONS_00056112|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at scaffold_267:59183..59679 (Clytia hemisphaerica)
TAAAACCCGTGAGGGGAGCAAAATGGGTGCCTAGTATGTGTGACCCATTA
AGAtgcctttttcacaccctcaaaAGTCCCTCAACAGACACCCGAGGTTA
CATAATTCCAGGAAGCCATTTATCCCCTTCCCATTTCCCCATTTTCGCAT
AATTAAAGTCAATATCAAATCATATTTGCTCCTCAGAAGGCTGTTTGCAA
TTACCCCTTTTGTTTGACCCCTTTAACTACTTTCAAACCTTCCTTCTTTA
TATTTGTTTTACGactttgttattttgaaatgcTAAGGCTAAGCCATTAA
CCCCAACCCATTAGGTAATCAGGCAATTAACATTTATTTTAGGGGTAGGG
ACCTAGTATATATAGAggtcaaattttctttgtaagtAGACAAGTAGACA
AGTGAAGTTATTTCAACCTTCATCGACTTATTTTCACAATGTAAgtgtaa
catttttttttatctttaggAGCTGGTTatgttaaagattatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035314XLOC_035314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056112-exon-scaffold_267-1491911889:59183..59679TCONS_00056112-exon-scaffold_267-1491911889:59183..59679Clytia hemisphaericaexon
TCONS_00056112-exon-scaffold_267-1510915933:59183..59679TCONS_00056112-exon-scaffold_267-1510915933:59183..59679Clytia hemisphaericaexon
TCONS_00056112-exon-scaffold_267-1575043694:59183..59679TCONS_00056112-exon-scaffold_267-1575043694:59183..59679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:59183..59679 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.298555	0.256742	0.271778	0	0.192844	0.609825	3.29105	4.98386	1.65582	0.828304	0.0055867	0.149275	4.57473	5.47617	0.832175	0.749656	0.940093	1.06402	8.28848	11.8577	0.902056	1.65457	0.725137	1.12693	0.0139387	0.756582	0.607948	0	0.390119	0.753211
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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