|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056110 ID=TCONS_00056110|Name=TCONS_00056110|organism=Clytia hemisphaerica|type=transcript|length=4279bp
GGGATTTGTTGCAAAATAACAAGGTCCAAAAATCACAACCATCATTTGTC
AACTTTAAATTCCACTTTATGAGACGAGAGATCTCAGgattaaaaatata
aacacgATTTTATTTGTAGAACTAACAACAAGAGTATAACAATATATAGT
AATATAAACattgtttttatcaaatataaggAAAATTTTACTTAGACTCC
AAGGTAATTGAATAAACTTTTTGGGAGGTTCTGATTCTTCAAATTCATTT
CAGAATGAAGCACAGTCATCCTCGATTGGTGCTTCAGTGAAATGTTTTCT
TCATTCATTGTCCTGCTAATCTTGAAGAATAAAACATCTTTCAAGTCCAT
ATCCAAGTCACGAAAAACCGCTCCAACCTCTGTCATATTCCAATTGATAG
AAAATCTAGCTGAGGACACTTGCTCGATAACCACCTCTGAAGACTTTTGG
CCATTCGAATTAAGAATAAATAAACGAGATGTCAATGTTAACGGCTCGAA
GGATTCATAACATGTTCTTACTGACAGGAGATCTCTGCCACATCTTTTGA
TCGGTCGAACAGAATACACATTCTGATCTTGTACAAGATCATCTTTAACT
TTCATTTCTGATACCTTGGCAATCTCACCATTTTGCAGTTTATACAACCG
AATGATATTTACTTTCAAATCATAATCAGCATAATTTGAAAGAAGTAATT
CTCCAGCAAAGAGAAAATTACAATCATCCGGTGCAGGGATTGAGTATGAA
CATACAAATTCTCCGTTGTAGTTATATTCATGGATAACCAAATGGTACAC
TTCATTGATAGGAATCTCGTCATGTAGATACATTTTGTCCTTCATCAAAT
GCAATTGGCAATATTCTGTGAGACGAGACTTCAAATCTATCACAACTCTA
TTCGAATGAATAAAAACATCTTGGTCTTTGCAAATAAAATCTATGTAACA
GGTGGAAACACAGTCATCAAACTGTGAAACTTTATtgccaaaaaaagttt
taacgGTCAATTTTCTTGTATTGTTTTGTTGAATCTTAAAATTCACATCA
AGCAGCATATTACTTAGTTCTATGTCATAGTTGATAGAAAAATCAGCTTT
TCCAATCTTTACAGTCATCTCAGTGACTTTATATTTCGTATTGAAAGCAG
CTATAACGTCTACAAGGTAGAATTCTAAAACCCTTCTTGACTCTGAAACA
TATACTGCAGTACCAGTCTCAGGGTAGAACTTACTGTAAATTATATCTGT
ATGATCATCAAGATCTGGAAGCTTAATCCTCAAAATCTTCTTCTCAAGTT
CAGATTTATTCTTATTGAATGAGAGGACGTATATTTCATCATCTTTGCCA
GTGGAATGTCGAAACACCAAAAAGTATTGACCGGATGCATCAAAACCTGG
TATGATTTTCCCCTTCAAATCATAAGGATCAAAATCTTCAGCAATAGACA
TTTCCAATTCTTTCCCAGTGAATTCTGATGGCAAAAACTTCTTTTTGTCT
CCATTCatttcgaaaaacttttttgaagcatAACATGTATAATATGAGGG
TAATATTTCTGATTTGTGTCAGTGTCACGGTCAGTGTTCAGGTCCCACAT
AATAAATTGGACTTACCAAAATTAAAGTCCCCCATAAGATTGAGAATTTT
TGGGTAGCACATGAAACACATGAAAAGTTAGAgtaattgaattaaaaatt
gcaCATCTCCTAAACAATAAAACATTTTgccaatttcaaaataaatgatt
GTGCTGTTGACAAGCACATTTCAGCTTTGATAAGCCTCTGAGTAAgggtt
atttcaaaaaactgattataGCAtcataattgatgacgtcagaaaatcta
aaaattgaatttctcaataatgttttacccattttttgaaatttgcttat
tttgatattttttcactttggtGAGATCTTGGGTCCAAGTTTGAAGGAAG
GAATGGGATAAACCATATGAATGAGAAATTCCATTTTCAGTTTTTATCAT
GACGGGCATCATCAATTAAGCAAAAATGAGCAAAAAGAGTCACACACCCC
AGATTAGAAACTTCATCAAAAGACCCTTCATGTTTAGTCATTTTTTTGGT
TATATTCTGTTGACTGATGCCATCTAATAATTATGGCAGTCTTTTGTACA
AAACTTGGAGGATGCTTTCCCATCAAAAAGTAGTAAAATAGGAAAATTAC
GTAACTTTCACTGCAAAAATCAgttatattattattatgagTCATAATTA
CTTTacataaaaaattaaatgagTAAGACTAAGACTTTCTGATGATTAGT
AGTACTATAGTAGTATTCAATTGAATTGAGAATTCATTGTAATACCTCTT
CCAGAATGATGAACTTTATCATGGAAATGACTAACAATAGCTTCAGAAAT
ACTAGATTGATATGTTTCAATGCAAAGTCTAACAAAGACCTACTCAACCT
CCCACCAACCCGAATAAGACCTAAATCATCTACAAAAGGATCAAGAGACG
AAAGGGAAGTTCttagatttatttttcaaagcaatGAGATCtttagagaa
aaatttttcttgtaaaagcTTCTTTATAGTCATGAAGGAATCGTCTAGAT
CTTTAACGTTCAATTTACTGGtcacctttttctttttcatttcataaatA
GCTTTTAGAACATAAGCAAAGACACGTAACATTTtaggaaagcttgaaaa
atttGCTTCAAGATGACTAACAATATCCTTCAAGTCAAACGTTTGGATAG
AATCAGATGTTTGGATAGCATTCACTTTAATTGAAGGAGAAATACACTCA
GAGACACACAACACGAGACTTTCCTACAACCAAACTGCAATGGATCTGCT
TATTAGAATCAACAAGGCGAACATAAGAACAACCATaagcaaaatcagaa
aaatgatGAAGTGACACGTCTTTGATAACATCAGAAAATTTGGCAGGTTT
GAAACATCTGGGAACTGCAATCTCTTTCAAACATGGTAGATTAGACTTCC
AATCTATCAAAGCTTTCATGAAACTGTCTGGGAGAGAATCATCCCAGCTC
AAATTCAATTGAGACAATTTTTGCAGAATCAGCTTGCCTTCTAACACAAA
AGGAGAAGCTATACCTAAAGGATCATAAATCGAACTAACAGTACTAAGAA
TTCCACGTCGAATTAATTTTAGTCTCCTTTTATAACATGTTACACAAACC
AAGAGTATCCTTTTGAACGCTCCAAAGAAGACCAAGAGCTGTCTCAGATT
GACAGAGATTCAAAGTTTCAGATTCGATGACTTTTTTATCTTCACTTGGC
AAATCCTTTAACACTTCAGGAACACTGCTCACGAACTTGGTCAGTCTGAA
TCCACCACCTTCCTTACACATAGGAATGACATTTTTAATCAGATTTAATG
CTTTAGACACAGAAGATGTCGATTTCAAGAGATCATCAACATAAAAACTA
CGATTAAGAGCATCAAATGCCTCCTCTCCGTACTTGGATCTTCCTTCAGA
TGCACTAGATTTCAAAGCAAAATTGCTACAAACTTGTCGAGGAAGTTGCA
CCAAAGACATGAACACACATTTCATACCGTTGGTATGGACGACTTGTACC
CCATCCTCCCACcacaaaaactgaaagaaacCTCTTTGGTTTTTTGGCAC
CTTGACCTGATAATACATAGCTTCAATATCAGCCATAAAGACAATCTTCT
CTTCTCTAAATCGAATCAAAACACCCAACAGATCATTAGTCAAATCTGGA
CCTTGCAGAAGCAAATCATTCAAACTAACACCACCTGTGGAAGAACTACA
GTCCCAAACAACTCTCAGTTTGCTCTTTCTGGGATGGTACACACCATGGT
GAGGAATAAACCAATTCTTTCCTTCTGGATAATCACATGAAACTTTCCTG
GCATATCCCTTTTCTAACAAAGTCGACACAGAAGATTTGTAATCCTTCTT
AAACTTCTCATCTTTCTCAAACCTTCTTTTCAAACCAAACAAACGTCGTT
CAGCAGTTTTGAAGTTATTCCCGTAGGAAGCATTCTCTGAATGGCAGAGG
GATCACGTAATGGCCATTGACTTTCTCAACATCAGAATTCATTATTTCCA
TAAACTTTAAGCTATCTTGAGATACTTCGTCACCCTCAACAGGTACAGAT
GGGACACTTTCGATTTCATACAATTTCTTCAACATTTTCTCAACACCATT
GTCTTTCACAGAAACTCTATGGCAACTGGAAGCAGGAGAAGCAGAATTCA
AAGGACCAACAATACACCATCCAAGTTTT Run BLAST on NCBI protein sequence of TCONS_00056110-protein >TCONS_00056110-protein ID=TCONS_00056110-protein|Name=TCONS_00056110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
MNGDKKKFLPSEFTGKELEMSIAEDFDPYDLKGKIIPGFDASGQYFLVFR
HSTGKDDEIYVLSFNKNKSELEKKILRIKLPDLDDHTDIIYSKFYPETGT
AVYVSESRRVLEFYLVDVIAAFNTKYKVTEMTVKIGKADFSINYDIELSN
MLLDVNFKIQQNNTRKLTVKTFFGNKVSQFDDCVSTCYIDFICKDQDVFI
HSNRVVIDLKSRLTEYCQLHLMKDKMYLHDEIPINEVYHLVIHEYNYNGE
FVCSYSIPAPDDCNFLFAGELLLSNYADYDLKVNIIRLYKLQNGEIAKVS
EMKVKDDLVQDQNVYSVRPIKRCGRDLLSVRTCYESFEPLTLTSRLFILN
SNGQKSSEVVIEQVSSARFSINWNMTEVGAVFRDLDMDLKDVLFFKISRT
MNEENISLKHQSRMTVLHSEMNLKNQNLPKSLFNYLGV Run BLAST on NCBI transcript from alignment at scaffold_267:12424..16702 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056110 ID=TCONS_00056110|Name=TCONS_00056110|organism=Clytia hemisphaerica|type=transcript|length=4279bp|location=Sequence derived from alignment at scaffold_267:12424..16702 (Clytia hemisphaerica)
AAAACTTGGATGGTGTATTGTTGGTCCTTTGAATTCTGCTTCTCCTGCTT
CCAGTTGCCATAGAGTTTCTGTGAAAGACAATGGTGTTGAGAAAATGTTG
AAGAAATTGTATGAAATCGAAAGTGTCCCATCTGTACCTGTTGAGGGTGA
CGAAGTATCTCAAGATAGCTTAAAGTTTATGGAAATAATGAATTCTGATG
TTGAGAAAGTCAATGGCCATTACGTGATCCCTCTGCCATTCAGAGAATGC
TTCCTACGGGAATAACTTCAAAACTGCTGAACGACGTTTGTTTGGTTTGA
AAAGAAGGTTTGAGAAAGATGAGAAGTTTAAGAAGGATTACAAATCTTCT
GTGTCGACTTTGTTAGAAAAGGGATATGCCAGGAAAGTTTCATGTGATTA
TCCAGAAGGAAAGAATTGGTTTATTCCTCACCATGGTGTGTACCATCCCA
GAAAGAGCAAACTGAGAGTTGTTTGGGACTGTAGTTCTTCCACAGGTGGT
GTTAGTTTGAATGATTTGCTTCTGCAAGGTCCAGATTTGACTAATGATCT
GTTGGGTGTTTTGATTCGATTTAGAGAAGAGAAGATTGTCTTTATGGCTG
ATATTGAAGCTATGTATTATCAGGTCAAGGTGCCAAAAAACCAAAGAGgt
ttctttcagtttttgtgGTGGGAGGATGGGGTACAAGTCGTCCATACCAA
CGGTATGAAATGTGTGTTCATGTCTTTGGTGCAACTTCCTCGACAAGTTT
GTAGCAATTTTGCTTTGAAATCTAGTGCATCTGAAGGAAGATCCAAGTAC
GGAGAGGAGGCATTTGATGCTCTTAATCGTAGTTTTTATGTTGATGATCT
CTTGAAATCGACATCTTCTGTGTCTAAAGCATTAAATCTGATTAAAAATG
TCATTCCTATGTGTAAGGAAGGTGGTGGATTCAGACTGACCAAGTTCGTG
AGCAGTGTTCCTGAAGTGTTAAAGGATTTGCCAAGTGAAGATAAAAAAGT
CATCGAATCTGAAACTTTGAATCTCTGTCAATCTGAGACAGCTCTTGGTC
TTCTTTGGAGCGTTCAAAAGGATACTCTTGGTTTGTGTAACATGTTATAA
AAGGAGACTAAAATTAATTCGACGTGGAATTCTTAGTACTGTTAGTTCGA
TTTATGATCCTTTAGGTATAGCTTCTCCTTTTGTGTTAGAAGGCAAGCTG
ATTCTGCAAAAATTGTCTCAATTGAATTTGAGCTGGGATGATTCTCTCCC
AGACAGTTTCATGAAAGCTTTGATAGATTGGAAGTCTAATCTACCATGTT
TGAAAGAGATTGCAGTTCCCAGATGTTTCAAACCTGCCAAATTTTCTGAT
GTTATCAAAGACGTGTCACTTCatcatttttctgattttgcttATGGTTG
TTCTTATGTTCGCCTTGTTGATTCTAATAAGCAGATCCATTGCAGTTTGG
TTGTAGGAAAGTCTCGTGTTGTGTGTCTCTGAGTGTATTTCTCCTTCAAT
TAAAGTGAATGCTATCCAAACATCTGATTCTATCCAAACGTTTGACTTGA
AGGATATTGTTAGTCATCTTGAAGCaaatttttcaagctttcctaAAATG
TTACGTGTCTTTGCTTATGTTCTAAAAGCTatttatgaaatgaaaaagaa
aaaggtgaCCAGTAAATTGAACGTTAAAGATCTAGACGATTCCTTCATGA
CTATAAAGAAgcttttacaagaaaaatttttctctaaaGATCTCattgct
ttgaaaaataaatctaaGAACTTCCCTTTCGTCTCTTGATCCTTTTGTAG
ATGATTTAGGTCTTATTCGGGTTGGTGGGAGGTTGAGTAGGTCTTTGTTA
GACTTTGCATTGAAACATATCAATCTAGTATTTCTGAAGCTATTGTTAGT
CATTTCCATGATAAAGTTCATCATTCTGGAAGAGGTATTACAATGAATTC
TCAATTCAATTGAATACTACTATAGTACTACTAATCATCAGAAAGTCTTA
GTCTTActcatttaattttttatgtAAAGTAATTATGActcataataata
atataacTGATTTTTGCAGTGAAAGTTACGTAATTTTCCTATTTTACTAC
TTTTTGATGGGAAAGCATCCTCCAAGTTTTGTACAAAAGACTGCCATAAT
TATTAGATGGCATCAGTCAACAGAATATAACCAAAAAAATGACTAAACAT
GAAGGGTCTTTTGATGAAGTTTCTAATCTGGGGTGTGTGACTCTTTTTGC
TCATTTTTGCTTAATTGATGATGCCCGTCATGATAAAAACTGAAAATGGA
ATTTCTCATTCATATGGTTTATCCCATTCCTTCCTTCAAACTTGGACCCA
AGATCTCaccaaagtgaaaaaatatcaaaataagcaaatttcaaaaaatg
ggtaaaacattattgagaaattcaatttttagattttctgacgtcatcaa
ttatgaTGCtataatcagttttttgaaataacccTTACTCAGAGGCTTAT
CAAAGCTGAAATGTGCTTGTCAACAGCACaatcatttattttgaaattgg
cAAAATGTTTTATTGTTTAGGAGATGtgcaatttttaattcaattacTCT
AACTTTTCATGTGTTTCATGTGCTACCCAAAAATTCTCAATCTTATGGGG
GACTTTAATTTTGGTAAGTCCAATTTATTATGTGGGACCTGAACACTGAC
CGTGACACTGACACAAATCAGAAATATTACCCTCATATTATACATGTTat
gcttcaaaaaagtttttcgaaatGAATGGAGACAAAAAGAAGTTTTTGCC
ATCAGAATTCACTGGGAAAGAATTGGAAATGTCTATTGCTGAAGATTTTG
ATCCTTATGATTTGAAGGGGAAAATCATACCAGGTTTTGATGCATCCGGT
CAATACTTTTTGGTGTTTCGACATTCCACTGGCAAAGATGATGAAATATA
CGTCCTCTCATTCAATAAGAATAAATCTGAACTTGAGAAGAAGATTTTGA
GGATTAAGCTTCCAGATCTTGATGATCATACAGATATAATTTACAGTAAG
TTCTACCCTGAGACTGGTACTGCAGTATATGTTTCAGAGTCAAGAAGGGT
TTTAGAATTCTACCTTGTAGACGTTATAGCTGCTTTCAATACGAAATATA
AAGTCACTGAGATGACTGTAAAGATTGGAAAAGCTGATTTTTCTATCAAC
TATGACATAGAACTAAGTAATATGCTGCTTGATGTGAATTTTAAGATTCA
ACAAAACAATACAAGAAAATTGACcgttaaaactttttttggcaATAAAG
TTTCACAGTTTGATGACTGTGTTTCCACCTGTTACATAGATTTTATTTGC
AAAGACCAAGATGTTTTTATTCATTCGAATAGAGTTGTGATAGATTTGAA
GTCTCGTCTCACAGAATATTGCCAATTGCATTTGATGAAGGACAAAATGT
ATCTACATGACGAGATTCCTATCAATGAAGTGTACCATTTGGTTATCCAT
GAATATAACTACAACGGAGAATTTGTATGTTCATACTCAATCCCTGCACC
GGATGATTGTAATTTTCTCTTTGCTGGAGAATTACTTCTTTCAAATTATG
CTGATTATGATTTGAAAGTAAATATCATTCGGTTGTATAAACTGCAAAAT
GGTGAGATTGCCAAGGTATCAGAAATGAAAGTTAAAGATGATCTTGTACA
AGATCAGAATGTGTATTCTGTTCGACCGATCAAAAGATGTGGCAGAGATC
TCCTGTCAGTAAGAACATGTTATGAATCCTTCGAGCCGTTAACATTGACA
TCTCGTTTATTTATTCTTAATTCGAATGGCCAAAAGTCTTCAGAGGTGGT
TATCGAGCAAGTGTCCTCAGCTAGATTTTCTATCAATTGGAATATGACAG
AGGTTGGAGCGGTTTTTCGTGACTTGGATATGGACTTGAAAGATGTTTTA
TTCTTCAAGATTAGCAGGACAATGAATGAAGAAAACATTTCACTGAAGCA
CCAATCGAGGATGACTGTGCTTCATTCTGAAATGAATTTGAAGAATCAGA
ACCTCCCAAAAAGTTTATTCAATTACCTTGGAGTCTAAGTAAAATTTTcc
ttatatttgataaaaacaatGTTTATATTACTATATATTGTTATACTCTT
GTTGTTAGTTCTACAAATAAAATcgtgtttatatttttaatcCTGAGATC
TCTCGTCTCATAAAGTGGAATTTAAAGTTGACAAATGATGGTTGTGATTT
TTGGACCTTGTTATTTTGCAACAAATCCC Coding sequence (CDS) from alignment at scaffold_267:12424..16702 >TCONS_00056110 ID=TCONS_00056110|Name=TCONS_00056110|organism=Clytia hemisphaerica|type=CDS|length=1317bp|location=Sequence derived from alignment at scaffold_267:12424..16702 (Clytia hemisphaerica)
atGAATGGAGACAAAAAGAAGTTTTTGCCATCAGAATTCACTGGGAAAGA
ATTGGAAATGTCTATTGCTGAAGATTTTGATCCTTATGATTTGAAGGGGA
AAATCATACCAGGTTTTGATGCATCCGGTCAATACTTTTTGGTGTTTCGA
CATTCCACTGGCAAAGATGATGAAATATACGTCCTCTCATTCAATAAGAA
TAAATCTGAACTTGAGAAGAAGATTTTGAGGATTAAGCTTCCAGATCTTG
ATGATCATACAGATATAATTTACAGTAAGTTCTACCCTGAGACTGGTACT
GCAGTATATGTTTCAGAGTCAAGAAGGGTTTTAGAATTCTACCTTGTAGA
CGTTATAGCTGCTTTCAATACGAAATATAAAGTCACTGAGATGACTGTAA
AGATTGGAAAAGCTGATTTTTCTATCAACTATGACATAGAACTAAGTAAT
ATGCTGCTTGATGTGAATTTTAAGATTCAACAAAACAATACAAGAAAATT
GACcgttaaaactttttttggcaATAAAGTTTCACAGTTTGATGACTGTG
TTTCCACCTGTTACATAGATTTTATTTGCAAAGACCAAGATGTTTTTATT
CATTCGAATAGAGTTGTGATAGATTTGAAGTCTCGTCTCACAGAATATTG
CCAATTGCATTTGATGAAGGACAAAATGTATCTACATGACGAGATTCCTA
TCAATGAAGTGTACCATTTGGTTATCCATGAATATAACTACAACGGAGAA
TTTGTATGTTCATACTCAATCCCTGCACCGGATGATTGTAATTTTCTCTT
TGCTGGAGAATTACTTCTTTCAAATTATGCTGATTATGATTTGAAAGTAA
ATATCATTCGGTTGTATAAACTGCAAAATGGTGAGATTGCCAAGGTATCA
GAAATGAAAGTTAAAGATGATCTTGTACAAGATCAGAATGTGTATTCTGT
TCGACCGATCAAAAGATGTGGCAGAGATCTCCTGTCAGTAAGAACATGTT
ATGAATCCTTCGAGCCGTTAACATTGACATCTCGTTTATTTATTCTTAAT
TCGAATGGCCAAAAGTCTTCAGAGGTGGTTATCGAGCAAGTGTCCTCAGC
TAGATTTTCTATCAATTGGAATATGACAGAGGTTGGAGCGGTTTTTCGTG
ACTTGGATATGGACTTGAAAGATGTTTTATTCTTCAAGATTAGCAGGACA
ATGAATGAAGAAAACATTTCACTGAAGCACCAATCGAGGATGACTGTGCT
TCATTCTGAAATGAATTTGAAGAATCAGAACCTCCCAAAAAGTTTATTCA
ATTACCTTGGAGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056110-exon-scaffold_267-1491911889:12424..16702 | TCONS_00056110-exon-scaffold_267-1491911889:12424..16702 | Clytia hemisphaerica | exon |
| TCONS_00056110-exon-scaffold_267-1510915933:12424..16702 | TCONS_00056110-exon-scaffold_267-1510915933:12424..16702 | Clytia hemisphaerica | exon |
| TCONS_00056110-exon-scaffold_267-1575043694:12424..16702 | TCONS_00056110-exon-scaffold_267-1575043694:12424..16702 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:12424..16702 . |
Blast
The following BLAST results are available for this feature:
|
