TCONS_00056088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056088
Unique NameTCONS_00056088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1924

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056088 ID=TCONS_00056088|Name=TCONS_00056088|organism=Clytia hemisphaerica|type=transcript|length=1924bp
GCAATTAAAAATTGTCTTCTTACTATTATGCTTAGTCAAGCCTTAGGTAT
AAAAACTTAAAGTCTGTCCgggataagtgtgcactcttttttcttctgTC
TGTAACTTTTCAAGGAACTTTTCAATTGTAATAAATTTGGTACCGTTGGA
AATCGAAAGCACAATATTTggcattagtttttttcttaaaaaatgaagca
aaagtgaagaaaaagtgGGGGCGTACGGGAAAGCGGTTTGCCAGTTTCag
cccttttttctgtcggtttATCCGTGAAAGGGAAACATTACAGTGCCGGT
GATTAagctgtttttgtttgttttatcgGTGATAGAATCGAAAGCTAATC
TAATTTTTCACGCGTAGTgtccaaaataattatttattgccatgcgttaa
attagaaaaattatgGTAGTTCTGATTGTACACATCAAAATCCAGAAATA
CATTTAGGGAAAGAGAACTGAGGGGAAAAATCTTTATTTCAGTTGGTTTC
TTTTAGGTACTCATCACACTGTTGGCACCACTGAATGGCCCcagtttcat
tttgaatttatttcttGTGTTAACTTAACTGTCAAATCGCTCACAGCACT
CAGAAGTTCTTGGAATTTGGTTCTTTGTGTTCACTGGCCAGGCAAGTCAC
TCATTCCATTTGAAAGTATTGGTTGGAAGcagttgaatttgaaatttggt
tATTTGGTTCTTTGTGTTTACTAAACAGACAAGATGTGAATATTTGACTA
GCTGTTGGACTGCTTCTTAGCATTCAAAGAAGCTCGAAATGACATGAGTA
GTGCCAAGACAAATAATGAAAGGTGAATAGTTTGTTTTGATAAGGCTTAA
TTTTAAGTAGTAACTCCTAATTAACAAACCTCACTTATACAAAATTTACC
CAAATATTGTGTAGGTTCGTCTTGAATTGAGTTTTCGGTTGTTATTTTGC
TGGTTTATCTGCAAAATGGTATCAAGCTGCAGCATCTCTAGTAGAAAGTC
AATGTCATAGTATCATTTAATATTAGAGTGGGGTTTTCAGCTGCATTTGA
AAAATGTCgagttttattgaaaatgttttgcatTTTGGATCTTTGTAAAC
TTTAAGTAGCACATTAACTAGCTTAGAATatgcattttcaaattttaagg
ttGAAGTCATGGAGGGATAGGAGAAGAAGTGTTCAGATCATTTCAAATGT
CAACAAAGATGATACTGATTCATCTGATGTTAACGTTGCTTCAAATGACA
GCAGAGACGATGATTTTGACATGAGCGTAGATGACAATGATGGCTGTCAG
TCAACAGGTTTTATGTCGCCTGAGAGTGATGTTGATGACGAGTTGTTAGA
GCCCCCTGCAATTCTGGTTGGAGCTTGTGCTGCATCACCCCCTGTTCTTC
ACAGTCTTCTTCTGACTCTTCTAGTTCTATGGAATCAGATTTTGATTGCC
TAGATGACGAGACCGACGGAGTTCTTTGCGAGAAACTAAAGACATGGGCA
CTCAAAAATAATTGTACGAGGGCTTGTGTAAATGAAATGCTAAGTATTGT
TGTAGATCTTGGCTATAACGTTCCCAAGGATAGAAGAACACTTTTGAATA
CACAAAGGACAGTTGTTCAAACAGCGATGGGTTTCGGACAATACATATAC
ATTGGCGTCGAAAGAAGAGTTACGAAACTGTTATCATTCTACGACAATTT
AGATTGTATTGCTCTCTTTGTCAATATTGACGGTCTCCCTCTTTTTAAGT
CGAGCACAATCAATCTATGGCCTATTCTTATCCAGTTTCACAATTTTAAA
CCAATTTCTGTAGCATTTTTTTGTGGCAAATCGGAACCTCCTTTCAACGA
ATTCATGCATGATTTTATTGTTCAGATGAGACACTTGATTAACAATGGGA
TAACGTTCAATAATGTTCACCACC
Run BLAST on NCBI

protein sequence of TCONS_00056088-protein

>TCONS_00056088-protein ID=TCONS_00056088-protein|Name=TCONS_00056088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
MESDFDCLDDETDGVLCEKLKTWALKNNCTRACVNEMLSIVVDLGYNVPK
DRRTLLNTQRTVVQTAMGFGQYIYIGVERRVTKLLSFYDNLDCIALFVNI
DGLPLFKSSTINLWPILIQFHNFKPISVAFFCGKSEPPFNEFMHDFIVQM
RHLINNGITFNNVHH
Run BLAST on NCBI

transcript from alignment at scaffold_267:378080..381911-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056088 ID=TCONS_00056088|Name=TCONS_00056088|organism=Clytia hemisphaerica|type=transcript|length=3832bp|location=Sequence derived from alignment at scaffold_267:378080..381911- (Clytia hemisphaerica)
GCAATTAAAAATTGTCTTCTTACTATTATGCTTAGTCAAGCCTTAGGTAT
AAAAACTTAAAGTCTGTCCGGGATAAGTGTGCACTCTTTTTTCTTCTGTC
TGTAACTTTTCAAGGAACTTTTCAATTGTAATAAATTTGGTACCGTTGGA
AATCGAAAGCACAATATTTGGCATTAGTTTTTTTCTTAAAAAATGAAGCA
AAAGTGAAGAAAAAGTGGGGGCGTACGGGAAAGCGGTTTGCCAGTTTCAG
CCCTTTTTTCTGTCGGTTTATCCGTGAAAGGGAAACATTACAGTGCCGGT
GATTAAGCTGTTTTTGTTTGTTTTATCGGTGATAGAATCGAAAGCTAATC
TAATTTTTCACGCGTAGTGTCCAAAATAATTATTTATTGCCATGCGTTAA
ATTAGAAAAATTATGGTAGTTCTGATTGTACACATCAAAATCCAGAAATA
CATTTAGGGAAAGAGAACTGAGGGGAAAAATCTTTATTTCAGTTGGTTTC
TTTTAGGTACTCATCACACTGTTGGCACCACTGAATGGCCCCAGTTTCAT
TTTGAATTTATTTCTTGTGTTAACTTAACTGTCAAAGTGAGTTTAATAAC
TGAATACCTTAACTCTTTTGTGACGGAGCAACCTCAAATCGTTCCCCAGG
GAACGATGGATTCTGTCAGCTTTAAAATGATGCAGGGGTTCATTTCAGCG
TTTGTTTTCAACCAGGGACAAGGTCTATACATGGTTCAATCAAAATTTTC
TGTTTTTTTTTCATTCTCCTATTTTTTATAATGGCAGCCTAAATGTAATA
ACCATTGAATTTTAGGTAAAAATAGCAAGAAATCGTGTTAAAAAATTTTC
AGGTCTTTAAAATCTACGAATTTGCAATATTTTTCTTTATGATAAAAGTA
AATTTGCTCTTTGACCCGGAGAAAAAAAAATCAAGTTCAAATCTTTTTTC
ATCAATGAGATGATGGGGGGTACTAAGATTTGCCAAAAAAATTGGGGGGA
TGGGAATGTAGGGGGGTCAAATAAAGAAGGGAGGATAAAAACTTTTTGGT
CAACATGAGTCAAAAGATTCTGTTTTGGTTCCAATAAATCTTTTTTTTCC
TACTTCTCATAATTTCCCATTGATATTATGATATTATCAAAACTTAGATC
CATTTACCTGAGGGTTTTGAATTAACATGGTGCTTTCAATATCACAAGGT
TCTGGCCGTGGATCGCTGCAAATGATGCGGGTTCAAAACATTTTGAGAAT
GGGGTGTAATGAGTATATAGGGGNGTTAGATCCATTTATCTGACGGTTTT
GAATTAACATGGTGCTTTCAATATCACAAGGTTCTGGCCGTGGATCGCTG
CAAATGATGTGGGTTCAAAACATTTTGAGAATGGGGTGTAATGAGTATAT
AGGGGGATGAAATAAACCTGGGGGGTTCCAACCCCTCTGCAAACTATGGC
TTTTATTTAGAAAGCTGTTTGCAATCTCCGATTTTATCAAAACATGTTTT
TCTTGGTTATTTTTAGTCGCTCACAGCACTCAGAAGTTCTTGGAATTTGG
TTCTTTGTGTTCACTGGCCAGGCAAGGTGAGTCTAGTAAATAATATTCTC
ATTTAGTTACTCCCTTGAGAGTAGAAAGAAAATTGATCCAAGGAACCAAC
TCTTTGTACTGATACATTTTTTGAAGAAAATTTGTTACAAGCCATTGGCT
CTCAACAAGGTCAGGACATGTTTGCGACCCTTGCGATTCTGTTGTTACTC
CGATTTTATTTGGGATGCGATAATGAGCATGTTTTTGTTGTTCATTTTTA
GTCACTCATTCCATTTGAAAGTATTGGTTGGAAGCAGTTGAATTTGAAAT
TTGGTTATTTGGTTCTTTGTGTTTACTAAACAGACAAGGTGAGTCTTGTA
ATTGGATAAATTTCTCTTTATTTGGGCAGGACTAATCAGATTACCCCTTG
GTGCGTTTTCCTCTTTTTTGCTAGGCGATTTTCTTTTTGGGGGGGGGGCT
TCCCCTGAGATCTCAAAAACTACAAATGCTAGCACCTAAAATTTTGATCA
AGGGTAATATACGATAATATATGATTGTTTGTAAAAATTTGAGTTGGCTA
CATATCTGGTTGGTATTTTAAAGACCAGACAGGCCTAGGTAGGCCCCAAA
AACGCGAAAAGGGTTAAAATTAGGTCATAAATTTTCCAATTTCGCAGATT
CCCCAGTGCTTCTGCTTGCTTCCTTTGTCTCAAAGAAAAGTCATTTAGTC
TTTTAATGATGTGTCATTTTATCCCAAAACAATGTCAGAGATTGCTAAAA
CTAAAGGAGAAATAATATTTGTAACTTTTGAAGAAATTCATTTTTTTTGC
TTTCTTATCCTTTAGTATCCAAAGGCCTTACGTAAGCCAAAACATAACCG
GCGTTTGCGACGACGGGAACCGTCTAGTTAGGTCATAAATCACTAAAACG
TACAAAATACAAAAGTACAAAAAATGTCAAGGAGGAAATTTCACATAGAG
GTCCTATGACCTGGTCAGAAGGAGCAGAAGCATTTTCAGATAGAAGCAGA
TTGTTAAAAAAGTTGTACATACACTAGTGTAATCTGGTATAGCTTGTATA
AATAGTATGTGGTGAAATGAACTATTGTGTGTAATTTACAGATGTGAATA
TTTGACTAGCTGTTGGACTGCTTCTTAGCATTCAAAGAAGCTCGAAATGA
CATGAGTAGTGCCAAGACAAATAATGAAAGGTGAATAGTTTGTTTTGATA
AGGCTTAATTTTAAGTAGTAACTCCTAATTAACAAACCTCACTTATACAA
AATTTACCCAAATATTGTGTAGGTTCGTCTTGAATTGAGTTTTCGGTTGT
TATTTTGCTGGTTTATCTGCAAAATGGTATCAAGCTGCAGCATCTCTAGT
AGAAAGTCAATGTCATAGTATCATTTAATATTAGAGTGGGGTTTTCAGCT
GCATTTGAAAAATGTCGAGTTTTATTGAAAATGTTTTGCATTTTGGATCT
TTGTAAACTTTAAGTAGCACATTAACTAGCTTAGAATATGCATTTTCAAA
TTTTAAGGTTGAAGTCATGGAGGGATAGGAGAAGAAGTGTTCAGATCATT
TCAAATGTCAACAAAGATGATACTGATTCATCTGATGTTAACGTTGCTTC
AAATGACAGCAGAGACGATGATTTTGACATGAGCGTAGATGACAATGATG
GCTGTCAGTCAACAGGTTTTATGTCGCCTGAGAGTGATGTTGATGACGAG
TTGTTAGAGCCCCCTGCAATTCTGGTTGGAGCTTGTGCTGCATCACCCCC
TGTTCTTCACAGTCTTCTTCTGACTCTTCTAGTTCTATGGAATCAGATTT
TGATTGCCTAGATGACGAGACCGACGGAGTTCTTTGCGAGAAACTAAAGA
CATGGGCACTCAAAAATAATTGTACGAGGGCTTGTGTAAATGAAATGCTA
AGTATTGTTGTAGATCTTGGCTATAACGTTCCCAAGGATAGAAGAACACT
TTTGAATACACAAAGGACAGTTGTTCAAACAGCGATGGGTTTCGGACAAT
ACATATACATTGGCGTCGAAAGAAGAGTTACGAAACTGTTATCATTCTAC
GACAATTTAGATTGTATTGCTCTCTTTGTCAATATTGACGGTCTCCCTCT
TTTTAAGTCGAGCACAATCAATCTATGGCCTATTCTTATCCAGTTTCACA
ATTTTAAACCAATTTCTGTAGCATTTTTTTGTGGCAAATCGGAACCTCCT
TTCAACGAATTCATGCATGATTTTATTGTTCAGATGAGACACTTGATTAA
CAATGGGATAACGTTCAATAATGTTCACCACC

Coding sequence (CDS) from alignment at scaffold_267:378080..381911-

>TCONS_00056088 ID=TCONS_00056088|Name=TCONS_00056088|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_267:378080..381911- (Clytia hemisphaerica)
ATGGAATCAGATTTTGATTGCCTAGATGACGAGACCGACGGAGTTCTTTG
CGAGAAACTAAAGACATGGGCACTCAAAAATAATTGTACGAGGGCTTGTG
TAAATGAAATGCTAAGTATTGTTGTAGATCTTGGCTATAACGTTCCCAAG
GATAGAAGAACACTTTTGAATACACAAAGGACAGTTGTTCAAACAGCGAT
GGGTTTCGGACAATACATATACATTGGCGTCGAAAGAAGAGTTACGAAAC
TGTTATCATTCTACGACAATTTAGATTGTATTGCTCTCTTTGTCAATATT
GACGGTCTCCCTCTTTTTAAGTCGAGCACAATCAATCTATGGCCTATTCT
TATCCAGTTTCACAATTTTAAACCAATTTCTGTAGCATTTTTTTGTGGCA
AATCGGAACCTCCTTTCAACGAATTCATGCATGATTTTATTGTTCAGATG
AGACACTTGATTAACAATGGGATAACGTTCAATAATGTTCACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035299XLOC_035299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056088-exon-scaffold_267-1575043694:381326..381911TCONS_00056088-exon-scaffold_267-1575043694:381326..381911Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1575043694:380336..380395TCONS_00056088-exon-scaffold_267-1575043694:380336..380395Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1575043694:380024..380110TCONS_00056088-exon-scaffold_267-1575043694:380024..380110Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1575043694:378080..379270TCONS_00056088-exon-scaffold_267-1575043694:378080..379270Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1510915933:381326..381911TCONS_00056088-exon-scaffold_267-1510915933:381326..381911Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1510915933:380336..380395TCONS_00056088-exon-scaffold_267-1510915933:380336..380395Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1510915933:380024..380110TCONS_00056088-exon-scaffold_267-1510915933:380024..380110Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1510915933:378080..379270TCONS_00056088-exon-scaffold_267-1510915933:378080..379270Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1491911889:381326..381911TCONS_00056088-exon-scaffold_267-1491911889:381326..381911Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1491911889:380336..380395TCONS_00056088-exon-scaffold_267-1491911889:380336..380395Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1491911889:380024..380110TCONS_00056088-exon-scaffold_267-1491911889:380024..380110Clytia hemisphaericaexon
TCONS_00056088-exon-scaffold_267-1491911889:378080..379270TCONS_00056088-exon-scaffold_267-1491911889:378080..379270Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056088-proteinTCONS_00056088-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:378080..381911 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0628925	0.142585	0.1656	0.160407	0.167474	0.0220448	0	0.0995956	0.391257	0.130901	0.335335	0.179104	0.234724	0.314334	0.0939729	0.0630296	0	0.0955031	0.0222356	0.138631	0.100006	0.0292675	0.023719	0	0.0222104	0.0198223	0.0283656	0	0.0461554	0.0233933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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