|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056087 ID=TCONS_00056087|Name=TCONS_00056087|organism=Clytia hemisphaerica|type=transcript|length=383bp
AACTAAGCCACCACGGATGACGAATCGTGGAGAATCTTCAAGCACTGGAC
GAAATCAGTCATTTAATGGTGGAAATGTAAGAAACAATAAGTCCAGTTTT
GGTCAACACTCTCCAGCACAAAAAGtatCCCAGACGAAGCGATCAAAGTA
TGGAGATGGTGGAAAAGATTTCCAAGAGATGTCAAACAAACaGTTTCAAT
ATACCATGCTCATGGAGATGGAATCATTCAAAACGACTCAAAACCAAATA
TTGCAACTATTGCAACAAAGAAACAAAGATGATGATGACGAACAAGATGA
CGACGAACCTCCAAGGCCGCTTAAAGATATGGAGGAGTTTGACGCGGCGG
GGACCGCTTTGCAGAAATCAAGCAAGAAAAGAA Run BLAST on NCBI protein sequence of TCONS_00056087-protein >TCONS_00056087-protein ID=TCONS_00056087-protein|Name=TCONS_00056087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
TKPPRMTNRGESSSTGRNQSFNGGNVRNNKSSFGQHSPAQKVSQTKRSKY
GDGGKDFQEMSNKQFQYTMLMEMESFKTTQNQILQLLQQRNKDDDDEQDD
DEPPRPLKDMEEFDAAGTALQKSSKKR Run BLAST on NCBI transcript from alignment at scaffold_267:376910..383316- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056087 ID=TCONS_00056087|Name=TCONS_00056087|organism=Clytia hemisphaerica|type=transcript|length=6407bp|location=Sequence derived from alignment at scaffold_267:376910..383316- (Clytia hemisphaerica)
AACTAAGCCACCACGGATGACGAATCGTGGAGAATCTTCAAGCACTGGAC
GAAATCAGTCATTTAATGGTGGAAATGTAAGAAACAATAGTAAGTTTTTC
TTCTATTTTGAATTATTTCAAAACTTATTAACTCTTTAGGAAGCTAATAA
TTGGGTGTAATATAGAAGAGAGTTTACCTTAGGGGCCATCCATATAGTAC
TTACGAAAATTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTAATTTTTGCATTTATTTTC
TTTTTTGGACAAATCTATTTTCATCTTCCCACGCAAGGATTTTGAGAATT
CCCGGAAAAGTTCCAAAAATATTTTTTGCGTTTTCTCAAATTTTCGCAGA
TTTGGTAAAAAACATGTAAAAATAAAAAAAACGTTTCTACAAAAATTGTT
TCTCTTAAATTAAGTACATACCGTAATTTTTCTAATTTAACATGCACAGG
AAAAATCATAATTGATTTTACTTTAATTATTATTAACGCATGGCTGTAAT
TCCAAGCAATTAAAAATTGTCTTCTTACTATTATGCTTAGTCAAGCCTTA
GGTATAAAAACTTAAAGTCTGTCCGGGATAAGTGTGCACTCTTTTTTCTT
CTGTCTGTAACTTTTCAAGGAACTTTTCAATTGTAATAAATTTGGTACCG
TTGGAAATCGAAAGCACAATATTTGGCATTAGTTTTTTTCTTAAAAAATG
AAGCAAAAGTGAAGAAAAAGTGGGGGCGTACGGGAAAGCGGTTTGCCAGT
TTCAGCCCTTTTTTCTGTCGGTTTATCCGTGAAAGGGAAACATTACAGTG
CCGGTGATTAAGCTGTTTTTGTTTGTTTTATCGGTGATAGAATCGAAAGC
TAATCTAATTTTTCACGCGTAGTGTCCAAAATAATTATTTATTGCCATGC
GTTAAATTAGAAAAATTATGGTAGTTCTGATTGTACACATCAAAATCCAG
AAATACATTTAGGGAAAGAGAACTGAGGGGAAAAATCTTTATTTCAGTTG
GTTTCTTTTAGGTACTCATCACACTGTTGGCACCACTGAATGGCCCCAGT
TTCATTTTGAATTTATTTCTTGTGTTAACTTAACTGTCAAAGTGAGTTTA
ATAACTGAATACCTTAACTCTTTTGTGACGGAGCAACCTCAAATCGTTCC
CCAGGGAACGATGGATTCTGTCAGCTTTAAAATGATGCAGGGGTTCATTT
CAGCGTTTGTTTTCAACCAGGGACAAGGTCTATACATGGTTCAATCAAAA
TTTTCTGTTTTTTTTTCATTCTCCTATTTTTTATAATGGCAGCCTAAATG
TAATAACCATTGAATTTTAGGTAAAAATAGCAAGAAATCGTGTTAAAAAA
TTTTCAGGTCTTTAAAATCTACGAATTTGCAATATTTTTCTTTATGATAA
AAGTAAATTTGCTCTTTGACCCGGAGAAAAAAAAATCAAGTTCAAATCTT
TTTTCATCAATGAGATGATGGGGGGTACTAAGATTTGCCAAAAAAATTGG
GGGGATGGGAATGTAGGGGGGTCAAATAAAGAAGGGAGGATAAAAACTTT
TTGGTCAACATGAGTCAAAAGATTCTGTTTTGGTTCCAATAAATCTTTTT
TTTCCTACTTCTCATAATTTCCCATTGATATTATGATATTATCAAAACTT
AGATCCATTTACCTGAGGGTTTTGAATTAACATGGTGCTTTCAATATCAC
AAGGTTCTGGCCGTGGATCGCTGCAAATGATGCGGGTTCAAAACATTTTG
AGAATGGGGTGTAATGAGTATATAGGGGNGTTAGATCCATTTATCTGACG
GTTTTGAATTAACATGGTGCTTTCAATATCACAAGGTTCTGGCCGTGGAT
CGCTGCAAATGATGTGGGTTCAAAACATTTTGAGAATGGGGTGTAATGAG
TATATAGGGGGATGAAATAAACCTGGGGGGTTCCAACCCCTCTGCAAACT
ATGGCTTTTATTTAGAAAGCTGTTTGCAATCTCCGATTTTATCAAAACAT
GTTTTTCTTGGTTATTTTTAGTCGCTCACAGCACTCAGAAGTTCTTGGAA
TTTGGTTCTTTGTGTTCACTGGCCAGGCAAGGTGAGTCTAGTAAATAATA
TTCTCATTTAGTTACTCCCTTGAGAGTAGAAAGAAAATTGATCCAAGGAA
CCAACTCTTTGTACTGATACATTTTTTGAAGAAAATTTGTTACAAGCCAT
TGGCTCTCAACAAGGTCAGGACATGTTTGCGACCCTTGCGATTCTGTTGT
TACTCCGATTTTATTTGGGATGCGATAATGAGCATGTTTTTGTTGTTCAT
TTTTAGTCACTCATTCCATTTGAAAGTATTGGTTGGAAGCAGTTGAATTT
GAAATTTGGTTATTTGGTTCTTTGTGTTTACTAAACAGACAAGGTGAGTC
TTGTAATTGGATAAATTTCTCTTTATTTGGGCAGGACTAATCAGATTACC
CCTTGGTGCGTTTTCCTCTTTTTTGCTAGGCGATTTTCTTTTTGGGGGGG
GGGCTTCCCCTGAGATCTCAAAAACTACAAATGCTAGCACCTAAAATTTT
GATCAAGGGTAATATACGATAATATATGATTGTTTGTAAAAATTTGAGTT
GGCTACATATCTGGTTGGTATTTTAAAGACCAGACAGGCCTAGGTAGGCC
CCAAAAACGCGAAAAGGGTTAAAATTAGGTCATAAATTTTCCAATTTCGC
AGATTCCCCAGTGCTTCTGCTTGCTTCCTTTGTCTCAAAGAAAAGTCATT
TAGTCTTTTAATGATGTGTCATTTTATCCCAAAACAATGTCAGAGATTGC
TAAAACTAAAGGAGAAATAATATTTGTAACTTTTGAAGAAATTCATTTTT
TTTGCTTTCTTATCCTTTAGTATCCAAAGGCCTTACGTAAGCCAAAACAT
AACCGGCGTTTGCGACGACGGGAACCGTCTAGTTAGGTCATAAATCACTA
AAACGTACAAAATACAAAAGTACAAAAAATGTCAAGGAGGAAATTTCACA
TAGAGGTCCTATGACCTGGTCAGAAGGAGCAGAAGCATTTTCAGATAGAA
GCAGATTGTTAAAAAAGTTGTACATACACTAGTGTAATCTGGTATAGCTT
GTATAAATAGTATGTGGTGAAATGAACTATTGTGTGTAATTTACAGATGT
GAATATTTGACTAGCTGTTGGACTGCTTCTTAGCATTCAAAGAAGCTCGA
AATGACATGAGTAGTGCCAAGACAAATAATGAAAGGTGAATAGTTTGTTT
TGATAAGGCTTAATTTTAAGTAGTAACTCCTAATTAACAAACCTCACTTA
TACAAAATTTACCCAAATATTGTGTAGGTTCGTCTTGAATTGAGTTTTCG
GTTGTTATTTTGCTGGTTTATCTGCAAAATGGTATCAAGCTGCAGCATCT
CTAGTAGAAAGTCAATGTCATAGTATCATTTAATATTAGAGTGGGGTTTT
CAGCTGCATTTGAAAAATGTCGAGTTTTATTGAAAATGTTTTGCATTTTG
GATCTTTGTAAACTTTAAGTAGCACATTAACTAGCTTAGAATATGCATTT
TCAAATTTTAAGGTTGAAGTCATGGAGGGATAGGAGAAGAAGTGTTCAGA
TCATTTCAAATGTCAACAAAGATGATACTGATTCATCTGATGTTAACGTT
GCTTCAAATGACAGCAGAGACGATGATTTTGACATGAGCGTAGATGACAA
TGATGGCTGTCAGTCAACAGGTTTTATGTCGCCTGAGAGTGATGTTGATG
ACGAGTTGTTAGAGCCCCCTGCAATTCTGGTTGGAGCTTGTGCTGCATCA
CCCCCTGTTCTTCACAGTCTTCTTCTGACTCTTCTAGTTCTATGGAATCA
GATTTTGATTGCCTAGATGACGAGACCGACGGAGTTCTTTGCGAGAAACT
AAAGACATGGGCACTCAAAAATAATTGTACGAGGGCTTGTGTAAATGAAA
TGCTAAGTATTGTTGTAGATCTTGGCTATAACGTTCCCAAGGATAGAAGA
ACACTTTTGAATACACAAAGGACAGTTGTTCAAACAGCGATGGGTTTCGG
ACAATACATATACATTGGCGTCGAAAGAAGAGTTACGAAACTGTTATCAT
TCTACGACAATTTAGATTGTATTGCTCTCTTTGTCAATATTGACGGTCTC
CCTCTTTTTAAGTCGAGCACAATCAATCTATGGCCTATTCTTATCCAGTT
TCACAATTTTAAACCAATTTCTGTAGCATTTTTTTGTGGCAAATCGGAAC
CTCCTTTCAACGAATTCATGCATGATTTTATTGTTCAGATGAGACACTTG
ATTAACAATGGGATAACGTTCAATAATGTTCACCACCGCGTATCATTGTT
CTGTTTGACATCGGATGCACCAGCACGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAATATAGAAGAGAGTTTAC
CTTAGGGGCCATCCATATAGTACTTACGAAAATTTTTTCCAAATATCGGA
TAGCCCTCCCCCTTCTACTTAAAGACAATAGAAATGACGCCATTCAAACA
ATAGATGTACACACTTTTGCTAAATCCCTTCTCGCCCTTCACTGCGTATA
CACTGTATGGATGGATGGCACTAAATTGCACTGGGACGAGTTTTCGCGTT
CGAAAGAAATCATATTGATACATATACTTTTCTCATATTACTTTTTTCCT
TTAAATTTCAGAGTCCAGTTTTGGTCAACACTCTCCAGCACAAAAAGGTA
AGCGTTTTTAATTAATAATCTTAAGAGATTTTGTAGCCTCCCACCCACGA
CTTGTTTCTGGAGAATTCAAACAAGACAAATAATTATTTTTTCTTTCTCT
TAAATATTGATAATTGTTTTTTATATTGATAATAAGAACTTTCAATGCTA
ATTTTTCTTTATAAGTATCCCAGACGAAGCGATCAAAGTATGGAGATGGT
GGAAAAGATTTCCAAGAGATGTCAAACAAACGTAATTAGTTTAAACATTT
CATTGCAAACATTTCTTTTCAACAAGTCAACTAAGTGTTTTTTTGCCAAA
CAAGTAGTATTTTTTGTTACATGCGGTGAAAAAAAACACATTTCTCCTTG
TAGTACTTGTATCCTTTATCTTTGACGAACCTTTTTTGCTGCCATGGTAA
CCGATGACGACATGTTTCATGGCAACTGTAATTCTTTAACACGTCTATGC
ACACGAGAACTCTTCTTGGTATACAGGCCACTGAGTTTTTGTCATCGCAT
TTTATTCTATTTTAGAGTTTCAATATACCATGCTCATGGAGATGGAATCA
TTCAAAACGACTCAAAACCAAATATTGCAACTATTGCAACAAAGAAACAA
AGATGATGATGACGAACAAGATGACGACGAACCTCCAAGGCCGCTTAAAG
ATATGGAGGAGTTTGACGCGGCGGGGACCGCTTTGCAGAAATCAAGCAAG
AAAAGAA Coding sequence (CDS) from alignment at scaffold_267:376910..383316- >TCONS_00056087 ID=TCONS_00056087|Name=TCONS_00056087|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_267:376910..383316- (Clytia hemisphaerica)
AGTTTCAATATACCATGCTCATGGAGATGGAATCATTCAAAACGACTCAA
AACCAAATATTGCAACTATTGCAACAAAGAAACAAAGATGATGATGACGA
ACAAGATGACGACGAACCTCCAAGGCCGCTTAAAGATATGGAGGAGTTTG
ACGCGGCGGGGACCGCTTTGCAGAAATCAAGCAAGAAAAGATATCCCAGA
CGAAGCGATCAAAGTATGGAGATGGTGGAAAAGATTTCCAAGAGATGTCA
AACAAACAGTCCAGTTTTGGTCAACACTCTCCAGCACAAAAAGACTAAGC
CACCACGGATGACGAATCGTGGAGAATCTTCAAGCACTGGACGAAATCAG
TCATTTAATGGTGGAAATGTAAGAAACAATAAGTTTCAATATACCATGCT
CATGGAGATGGAATCATTCAAAACGACTCAAAACCAAATATTGCAACTAT
TGCAACAAAGAAACAAAGATGATGATGACGAACAAGATGACGACGAACCT
CCAAGGCCGCTTAAAGATATGGAGGAGTTTGACGCGGCGGGGACCGCTTT
GCAGAAATCAAGCAAGAAAAGATATCCCAGACGAAGCGATCAAAGTATGG
AGATGGTGGAAAAGATTTCCAAGAGATGTCAAACAAACAGTCCAGTTTTG
GTCAACACTCTCCAGCACAAAAAGACTAAGCCACCACGGATGACGAATCG
TGGAGAATCTTCAAGCACTGGACGAAATCAGTCATTTAATGGTGGAAATG
TAAGAAACAATAAGTTTCAATATACCATGCTCATGGAGATGGAATCATTC
AAAACGACTCAAAACCAAATATTGCAACTATTGCAACAAAGAAACAAAGA
TGATGATGACGAACAAGATGACGACGAACCTCCAAGGCCGCTTAAAGATA
TGGAGGAGTTTGACGCGGCGGGGACCGCTTTGCAGAAATCAAGCAAGAAA
AGATATCCCAGACGAAGCGATCAAAGTATGGAGATGGTGGAAAAGATTTC
CAAGAGATGTCAAACAAACAGTCCAGTTTTGGTCAACACTCTCCAGCACA
AAAAGACTAAGCCACCACGGATGACGAATCGTGGAGAATCTTCAAGCACT
GGACGAAATCAGTCATTTAATGGTGGAAATGTAAGAAACAATAAGTTTCA
ATATACCATGCTCATGGAGATGGAATCATTCAAAACGACTCAAAACCAAA
TATTGCAACTATTGCAACAAAGAAACAAAGATGATGATGACGAACAAGAT
GACGACGAACCTCCAAGGCCGCTTAAAGATATGGAGGAGTTTGACGCGGC
GGGGACCGCTTTGCAGAAATCAAGCAAGAAAAGATATCCCAGACGAAGCG
ATCAAAGTATGGAGATGGTGGAAAAGATTTCCAAGAGATGTCAAACAAAC
AGTCCAGTTTTGGTCAACACTCTCCAGCACAAAAAGACTAAGCCACCACG
GATGACGAATCGTGGAGAATCTTCAAGCACTGGACGAAATCAGTCATTTA
ATGGTGGAAATGTAAGAAACAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056087-exon-scaffold_267-1575043694:383228..383316 | TCONS_00056087-exon-scaffold_267-1575043694:383228..383316 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1575043694:377620..377655 | TCONS_00056087-exon-scaffold_267-1575043694:377620..377655 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1575043694:377386..377451 | TCONS_00056087-exon-scaffold_267-1575043694:377386..377451 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1575043694:376910..377101 | TCONS_00056087-exon-scaffold_267-1575043694:376910..377101 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1510915933:383228..383316 | TCONS_00056087-exon-scaffold_267-1510915933:383228..383316 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1510915933:377620..377655 | TCONS_00056087-exon-scaffold_267-1510915933:377620..377655 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1510915933:377386..377451 | TCONS_00056087-exon-scaffold_267-1510915933:377386..377451 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1510915933:376910..377101 | TCONS_00056087-exon-scaffold_267-1510915933:376910..377101 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1491911889:383228..383316 | TCONS_00056087-exon-scaffold_267-1491911889:383228..383316 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1491911889:377620..377655 | TCONS_00056087-exon-scaffold_267-1491911889:377620..377655 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1491911889:377386..377451 | TCONS_00056087-exon-scaffold_267-1491911889:377386..377451 | Clytia hemisphaerica | exon |
| TCONS_00056087-exon-scaffold_267-1491911889:376910..377101 | TCONS_00056087-exon-scaffold_267-1491911889:376910..377101 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:376910..383316 - |
Blast
The following BLAST results are available for this feature:
|
