TCONS_00056070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056070
Unique NameTCONS_00056070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056070 ID=TCONS_00056070|Name=TCONS_00056070|organism=Clytia hemisphaerica|type=transcript|length=1255bp
aaaaggGAGAGATTAAAAattagtttgagaaaaaaaaattcaaactctca
aagAGAAGCTCTCATTTTGACAGTGTTTGAAGTTGAAGTTGTAAATAATT
TCTGTTTTGATGGAATGAAGTCTTTAAGATAACGATGCTACAATGTAGTC
GTCCAACACCAATTGGAAGTATCAGACGATTGGCTGTCATCGCTATTTTC
GCGTATGCTGCTTTCAAATTCTATGGTCGCGAAAATACACCagATTACAC
AAGCAAATCACACGGTGCAACTAGTCGTCACCTACTGAGCGCTTTCGAAT
GGGAACAATGCAACTTTGAGATCGGTCATACACGGAACTATTCGAATCCA
GACTCTTGGTATTCACCAGCGTCTGCTAAAGGATGGGTTGCTTTGTATTG
TATCCTTATTCTCATCGTGTTTGTTGctTTGGCAATCATCTGTGATGACT
TTTTCGTGCCTTCTCTGGAAGCGATCagtgaaaaacttgatttaTCAGAA
GATGTAGCAGGTGCCACCTTTATGGCGGCCGGCTCTTCAGCGCCGGAACT
TTTCACGTCAATTGTGGGTGTGACGGTCGAGAGTGACGTCGGTGTCGGAA
CTATAGTTGGgAGTGCCATATTCAATCTTCTTGGTATTGTTGCATTATCG
GCAGCTTTTGCTGGTCAGGTTCTACATCTTGATTGGCGACCCTTGACGCG
TGACGCTGCATTTTACTGTTTTTCTATTTGCTTTTTCATCATCTTTGCAT
GGGATGGCAAATTTGAAATCTACGAAAGTGTCATTTTACTGGCCCTCTAT
TTTCTGTACATCCTTCTGATGAAATTCAATCCGAAGTTGATGGAGAAGAT
GGCTCAATGGGGATCACGAAAAGTGGATCCTTCATCTGACAATAGCAACA
AAAGCGATAAAGAAGATGGCACAGAAACGGTAACATAACTTTTACTAAAT
AGTTTGTTTATTgtaaggggggggggcaagtGGGCAAATACAGATAGATG
GATATACAGGATGACATAAAAAAATGTTGATGAAAAGTAAGAATTCCAAT
ATATTAGGTAGGTAGTACAGTTTGAAAGATAGTTAACTAACTGATTGTCG
GAAATGTCAGTGATTGTTCATATTTCGAagctcgaatgtctccttaactt
ggacggttgttaatttttcgaaaatttcccaaccccccggaccttattag
gaccccccctgtttattaatttttaagaatactttcagctgtcaaagaga
aggcc
Run BLAST on NCBI

transcript from alignment at scaffold_267:29750..44592+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056070 ID=TCONS_00056070|Name=TCONS_00056070|organism=Clytia hemisphaerica|type=transcript|length=14843bp|location=Sequence derived from alignment at scaffold_267:29750..44592+ (Clytia hemisphaerica)
aaaaggGAGAGATTAAAAattagtttgagaaaaaaaaattcaaactctca
aagAGGTGAAAGAGTTGATGACAGTGACGAATATATTTTGCATTTGTTGT
TAATAATTTAcgatttttatataattttgttgTGTTGTCTTTTTTTGTAT
TGTATATGCTGATTTATGTCGAGGTGGAGCAGCAAACTGCTTGATTTACT
AATTGAGCtgttttttcctgttttTCATTTCTAAATTTACGATCCCTCCC
TTTCGTATCTATTTATACTTACATGCAGCTCTTAATTTTGAGCACAGAAG
CTCTCATTTTGACAGTGTTTGAAGTTGAAGTTGTAAATAATTTCTGTTTT
GATGGAATGAAGTCTTTAAGGTAAGTCATATAGCACCACACTGTGGGCAA
GCAGGTGGAATTGTCCGGGAATTTATCAAAAACCAATTGTTTCCGATTCT
ACATGAAATTTGCAACACATTAGGCTTAAGTTTGGGTcgattttctgaat
ttttgtccatttcagTCTTTATTGAGCATTAAAAGAATTtggaaaaatag
catttttcgACTTTCCCACTCTACAGAGCAAAGAAGGCCATAGTTACCCA
ATTTTGAAGCCAAAAGcaattttttgacttgatttGCAAAGCTTAAGACT
AAAGACTATTCCATCCAAAAGAAGCTGTTTTTGGAtgaagaaattggaaa
aattgaatgaattttctcaaaaatgtgccgttttatgcatttttttaagg
ttcaaattttgacaaagacCTCAAAATATCTCGATTTGCCTAAATGGAAC
CAATTGAAACTATATATATTAATCCTCTATATATAAAATCCTctaattta
aacaaaaaacccATTCCAATTTGCTTTTGAGTGCTCTATTTCTACCTAAC
GCCTTAATCTTTCCCACTATGCACCAGTACGCATTAGCACCGGTTTTTCA
AACttgtttttgcttgtttttataagagcagaaaaaaatggcttttgaAG
GAGGAGGGAGGGCTGTTTCCATATAAACAGCTCTTCGTGCGTGATTGTCC
ATATATTTACTGGATTATTCCTTCAGATAACGATGCTACAATGTAGTCGT
CCAACACCAATTGGAAGTATCAGACGATTGGCTGTCATCGCTATTTTCGC
GTATGCTGCTTTCAAATTCTATGGTCGCGAAAATACACCaggtataattt
ttttcaaatcactTGAATGAAATCAATAACTGCCACACGCATTTGTAACA
TCCGTCTGACCtagtaaagattttttttccagcgGGGATGCAATAAGGAT
GTACACGAGGGCAGGaagctataagcaaaaagctcgtacccaaaaatttt
aaaaatgtcaaaaaatgaaggtcttcaaatctctctaaaacctattttta
tgggAAGCTATGGTATTTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAATTCCccta
tcttttcgtcaattgtacttgaattgagatttctttgcttgaaaattctt
caaataggtAGAGTATATCAGAATATGcaaaaaataaagtcaaaaatgCA
GAATTACAATGAACTAGAAGTCCTGCAAggtggattttctcatttttgat
caaaatgtttcgtagactaattttggaaaaacccgggtttttttttagga
ttcaGCTCATGTTTTAGCtttctaagtttatttttctcattctagtatat
atttctgacaactttacattaaaattataatatttcttacaaattcagga
aaataattacatatttctcatttatgatttttagcgtttaatcacttttt
tggccaaaaatgggTAATTTTTCGgccgaaatccaaaaaaaccggaatat
taacttgaaaataaccctatcatgttatatatcagtggaagcggaatttt
gagtagattttgaatatccaagtttcatgtcctgaaaaagaactcaactc
aaattattatgctttaacagctaaaaatagacatggatgggtacgagctt
tttgcttatggctaggacttcaaattttattttttcctttcaaacattat
atacagtaaaaaaatcactaaaaagtcCAACCTTTAGGATCCGCACATTT
ACAATAattttttctgacttgaaaaggctcgtccacccccatgtacgttT
TTTATTGGAACAGCCCATTAGGttatgaaaaagtttttttggaaaaaact
cAAGTTGTAGGCAAAACTCCTAACCCAAAAAATAAGCAACAAATTTACGA
TTTCTCAAAGTTGAATTTAATCAGCAAAAGAGTATTCCACAACACTCCAC
AACAAGTCTTGTACTCAAACATATAAAAAATGCAGGCTTTCAAAGTTAAA
AGTTCTGTCAGTTAGAGTAGGATTGTCACAGGATTTTGAACTTCAAAATC
ATATCTTTTTGTGTGTTTTCAAGAGTGCACgttcattttataagaacaaa
ctatataagaacataaggcttcgatggaaaaaatgttaagaacaagttaa
gaacattttaaggctttgtggattcaaaaatacctttttcttaggaaaat
ggtcaaaaatatattcacaaaattgtcacaataagaacatgttaagaatt
tttttaggcttaaaaactctaaatgttaagaacatccaaaggctgcaaaa
gttttggatgttcttataaaaaacgtgtatacagggggggcacgcagtta
ctacaagacagtatgacacttactaccgtggtggtactgtattcagaagt
tatgaaaacagttactacacagtgtagtaactgctgtttgggggtggtgc
caaacactaacggtagcacttttggtgtagtaagtgcttatattttaatt
ctttttaaagaactttcaaaatttttcaccaaaaatgaatttttttgtga
aaaaattctttgttaaaaaaaatatttgttataaatggacgaaaaaaaat
ttgattaatttttctcagactcaactttgaaattatgctttccctaatta
tcattaaaatgttctcaacctGTCTCAACAGCTGtaaaccaagtaaatta
aaagaaaatctagcacaaaaatggctttaggttgaaaaataatcgcaatt
tagggtaatttcgagcatgtttttgatgatatcactcaaaaaCAGGGGTG
GTACCTGGAAATCTtttctgaaaacagttactcccaaggtgtagtaactg
caaagggtggtggtcctgaaaaaaagtgttgaaaaagcacttactacaca
tcatgtcttgtagtaactgcgtgccccccctggTGTATAAGACTTGTTGT
AGTATATGTGTACTACGGCTTTTTTATGTTCACCTCTTATGTTTTCTTTT
CTACACAAGATTACACAAGCAAATCACACGGTGCAACTAGTCGTCACCTA
CTGAGCGCTTTCGAATGGGAACAATGCAACTTTGAGATCGGTCATACACG
GAACTATTCGAATCCAGACTCTTGGTATTCACCAGCGTCTGCTAAAGGAT
GGGTTGCTTTGTATTGTATCCTTATTCTCATCGTGTTTGTTGGTaagatc
aatttttgttatGGATTTTTGGAACAAACAGAATCATAGGCGTGTCACCT
TTTGAAAATGTCACCCACTCTAGGCCTCAGCAAAATCACGAACGTTCTTT
CAGCGAAAAATGATTTGACTACGATCTCTAGCTTTGAAAATATACATAGT
GGATTGTTTTAGCGCTTTATTCATGGTGTATACAGGActagaatttgaat
ttcttgaaaattaactcaaaatttccctcGAAAAAAAACCCTATGTATTC
CTAGTAAAATGTTGAGAAAACCTTGAGAAACATTATTTTCACAGCTGATC
GTTAGCTTGGCTCCTTTTCTATTCCCATTTTTCAGTCAAGATACAAATAT
ATGGTTTCTTGTCAGTAAAGCTCTCTCCAAATTAACTAATTTTGTTTGTA
ACATTTCAAACTTTTGAGTGTCAGTGAAACTCGAGACGAGACATAAAGTC
GGCAGAGATTCGGCTGTTTAAATTAGAGATCACTGAATGTTGATTGTGTT
CCATTCCGCTGGTCATACATTCCTTCAGTTCCTCCTCGACACCCATGCAA
CCTAATTTAGGAATGTGATTTAGCAATTAACGAGAATTTATCCTTGATCG
TCAGCTCTTtccactttaatttttttttacttagaaCGTTTTCCTACCAT
CCTCCTTTAAACAAtccttttttcaaattgtttttttttggggggggggg
gggcattaaaaaaagaaaacttttcgaAACGCTTTTCGCAAAAGATAAGT
TTTTTCGTAACGTATTGGGGTTTTGTAATTTGAGATGCGTCACATTAgaa
aatttatttactttttcccGTTCTGGATGCTCCGTGACTTATCAAGCATG
CCCTCGCTAAATAATTGGGTtgcttttttacaattttattttctttttca
atattaTTGCGATTTTATTCGGACAACGCTTTTtaagttttgtaattttt
caacaCATCTTTCTTCAATCACCTATCAGGTAACATAGGATTTATACTTT
CGTGGTTGATTCTTAGACAATTTAACTTTGCGATAGAGCCTACTTCTGAC
TGATGCTTCCTGATGATTTTAAAGATCCAGTGAAATGGAGGATACCGCCA
TCTTAAaagttttcactttcttttcaattattattaaaacaccaaaacaa
gCAGTGAaatatattccattataaaaatttataaaactagGATATAAAGA
CAGAAAAgtaatttaatgtttctaaactaACATACCTAATTTTTCATAAT
CAGAGTTTTCAAATTAACTTggttcatataaaaaaatctaTCAAATATAA
CACTAAATATTGGAGAGAATTAGCGGACACGCGATTTGTGAGTACGCTTG
CACGAAgtgtgaaaaataattaaaatctttCCCGGCTGAAAATTTTTGCA
TCATTTTAATTTATGTCAACACGATGTGTGCATTGACCCCAGTTTTATAA
CGATATTTTTTGGACAGCTCAGTCGATAGAGCGTTTGCACTAGTAATGAA
AAAGTCGCGATTTCGAATCTCACTTCAGTCCTCAGCTTGGTAGTTCGCTA
TTAGGGTCAATACGCACGTGTTGGCACTAAAAACAAAGTTGATTATAGTG
TTGTATGTTTCAAACTATAAGGAATCCCGGAGATTAGATGAAATAAAACA
TTGAGCACTATCTGTTGGAAAGGTaattcagaaaataaaaaataaaagtt
aaacattttacattttaaattgCTGCCAATCAAATATATAAAAAGAGTCA
AAAATCAATCGTTCAATTTAGGCCATCATAACGTCTTGTTAAATATTTGC
CAACTTTGCCATAAACAATATCCAATAATGGAAACATCAGATAAGAGATG
AAAGGTGCGNATATTTGCCAACTTTGCCATAAACAATATCCAATAATGGA
AACATCAGATAAACGATGAAAGGTGCAAAAGAAAGAAGTACAACATAATT
GGCATTGTTGCCAATAACCTGATCTTTCGTAGATGTTTCCATTAAAATCG
AAATgcaatttatcaaaattaaagCTTGTAAGCAGATTGACTCAACCATG
TTTAAGCGGGTTAAATTGAATATTTGCGAGGTCTGGTGTATACCATAATG
CAATAAAAGACAGGACGAAATTAACCATAGGCGATTTTCCGGACGAACGC
TGAAGGTACAAACAAAAGCCAAAACGGTTCGCGAGAAGAGGTACATGCAC
TCCCAACAAACAGCTTGCTCCTTTCTTTGATCACGTGACTCTCTTAATCG
GTATGGTTGAAACAGGGTGTGAAGAATATGTTTAGCTATCTGTCCATTCA
TCTCTGTTGATCGGTTTTGAGCTTCTGGTGTTTTGTGTTGCTTTAACAAA
AAGACCAATGCACTGAGTGGAAATGTTAGAATCAGGAGAAATTGGTTTGG
AGTTATCCTACATTGTCTTAACCATCTTGTTGCCTTGTACAGAGCAGGGA
TAAAGGGTATACACCAAAAGAACAAGACGAAAAGAGAAGACGAGACGATT
ACGCTGTCGGTGGAGAATGCCTTTGAAGCGTCCATGAAATGATATGAACT
ACCATTGATGGTGACTGGATGGATTAGCTGAAAGGATAATACGGTGATTG
CAGTATGGCCGAAACATAACAGTTGAATGTAAGCGCATTTGATACGGACA
GGTAAGGGGATCTTGTTAAAGGCTTTGGTATTTTCATCGATATAGACTAT
TTCCCTTCTCGGTTGATCATTTTGGAGTCTCCTGGTAGTAATATACTCGT
AAAGGCCAATTCCAAATACTCCAACTGACAGACTAGCAAATGGTATAAAC
CATACAATGATCCTAAAGATTTCAAGTTCCGTCATACTTTTCATTTCAAG
GGGACAAGTGTTCCATTCGAGAGAAGGTATCTGCAACTTGATCGAGAAAA
TCGAGACGAGAATTTCAGTTGGAATCAATTTCTTAAGTGATAAAGGGTTC
TGAATCAATATCAGACCGAGGATCTGGTAAAAGTTGAATATGATTTTCAT
CATTCCTTGGGTCGAAAGTGGCATTGGGTTTCCAATGATATTATTTTGGT
TCAGGTTATTTTCAGCGACTAAAGGACGAAGCTCGTTAGTATTTTGATGG
CAATCGAACGAATTATCATGGTTGTATTCTGTGTTGCTGCTCGCAGATGT
TGAATTACAACCTCCATAATTTGGTTTCTCACNTGGTTGTATTCTGTGTT
GCTGCTCGCAGATGTTGAATTACAACCTCCATAATTTGGCTTCCCAACAC
TCACCAGTTTTGATGATTGTTCTCCATGGGCATTATGCCCGTCAAATCTT
TGTTCGCCTTTTCGTTTCCCTTCTATCTCCTTTCTTTCATGTCGCTGTCC
TAAAACTTTTGCATTATCATTATGTTCCTTACGCCACTGTTTCTGCGTCA
AATTCCTtacatttctttctttctttcgtcCCAAATgcgcaaaaacgtaa
aaaactttttcagaaaACATCAACATTAAAAGAACTATGAGTGAGTCaga
caaaacaaaccaaataaTGCTAGCATTGCATTTCTCATTAGCAACACAAC
TATACTCGTTAAATATTGTGAAACTGTATCCAGATGGACAACTACTGCAA
AGTTTGCCAACTCTGTCGTTACGACAAGTATCATATGAGGTACAGTCCTT
CATCGATTGACAACAGTAGGTTGAAGGACATCTCTGGAAAGAGATTTCTC
CTGTATTTTTGCCAACATATCCCCAATAATTTCCTTCACTTAGGACCCCT
TTTTCCGTCCATACTCCATCATCAGGACATTCAAATTGTGGTGCACTAGA
AGTCTGAAAAGTTCCTGTCCAAAATAATGTCGATGGTTGTGTTGAATACT
TTCTTCCTTTCAAAGACAAGCAGAAATATTCAAAGTTCTTGTCATCATAA
GAATATTTTACTTCCGTGTTTTCTGGACACTCAAATACCAAACCTGTTCC
TATATCAATAGTAGTGTTTACAATTTTAACTCTAGAATATTGGTCAGTCC
GAATGGCTTGCTGAGAAATATTGATACCTCCAAGGTGGAAATATACTTCA
TGAAAGTGAATATACAATTTTCTATATCACCGTAGGTTGAAAATAACTGA
ATCGTCAAACCGTTGAATATGCAATCGGTAATTACTAATTCAGAAATACC
ATATTCTGAGTCTTTTATATGTAGAGCTGCTTTTTGAGAAGGTTGTTCGC
TTTCAAAGATAAATGATACGATGCTTAAAGACTGAGTCTGTATCGCCATA
CATGTTTCATTAGCTGTGGTCGTATTACATTTGATAATTGGCTGAACCCT
TGAATCTAATGCTTCTAAGGAGATTGAGAACTGGTCCGATGTATACTGTG
ATCCATTTCCAGCATTGACGTGGTAAACAAAGCGTTTGTTAAGGATCCAC
CATCTACTATCAAATGACATACACTTATATATTGTTGTACTAAACAATTC
TTGAATGCGTATGTGATGGTGCGACAAGGTTCTGATCGCAATCCACAACC
ATCTTCATCATTTGCATTGGTGTCTTGTGAAACATGGATGTCACAGCATG
GTGGGGTAGATACTGGTAAATGGAAGTTGAAGCAAACTAGTTATTATCAT
TAATGAAATACTAGagttaaattatttttcctgTTCGATTTTTGGACACA
CTGTCCCTGTTTAAACCCTTGAATAGAGAATAGGTGATACATGCCCATAT
CCGAGTTTTAAGTAATTTCGTACTATGACTATCTTTTTATAACAGTGTCC
ATAATAAAAAGGCATAAGAAGATATTTCTCGTATTAGcatgagaaatttt
aaattgtgAACAAAGGTTTTGGACTGTCGAACTTTATGAAGCTAAACTTG
TTCGGATCAATATTTTACAGAAAACAGCAAAATAAGTTTTTGATTACCTG
TAAATGGCGAGAATAATAAAACCAACAGAAGGAGCATCAACATCATGCAG
TTCAAAAGTTTACTAAACATTAAACATACTCTTTTCCCTATGAAAACCTT
GTCTAATGTGAAACTATTTGGTTTATTTTGCTTGAATAATGTTGACAATC
AAAATATCCCATTTCATTATGCGTGTTGGAACCTATTTCCCTTGTATTCA
GAGATTTAAGTCAAAGTATAAAAAATGGTTCATTTCACCGTCCCTGTTGT
CTCCTAAACATTCATTTTAAGGCATTCTTTCAGATAGCCTTTTTGTTGGT
TTACTAAAGAAAGAGCCTTTAAAAATGCCACCAGAGAATTACTTATCCTA
TTATTTGTGGCCCGGGGTTCACTTTAGCTCTCTTATAGACTGGATAGCGC
GATTAAAGTGGCCCGGTGGTATACACTCTTTTATAAGGACACATACAAGG
ctaaatatttgttaaaacctaaaaacaacCTGACGCTCAGCTCTAGTGAA
TGTTTTAGAACAAGATAAATAGGACCAAGTCTGAATCAAAAATATAGAAA
TTAAAGGAATAGTGTATTGCtacgcaaatcaaaatattatggtcacgtgt
ctggaatttgattggtcgagcgcgataaaagtttacaatttgattggtcN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
ttttgttttcctgtgttctttgtgtttcatcaagagcagatgaacaaaat
aacaaatagtaaataaagcataaaacattttttgaaaaaaataacatgac
attacaaaattcctgtatatacaattggattttgaaaactatataaagta
tttacaaattctttatggcttcacttttatcaaaagtgatgcaaaagtat
ttgaataataatatgacctcctctttgaaattgccttccaaaatatttct
ttccattcaaaaaaaaattctcaattaaagcaccctcagaatttttcaca
caGTAGCACTTCATAGGGAAAACTGTTGCtgaaaaaatacttcctttttt
agcagaaaatgtttttaatatcttaaaattttatcattgagtatatgtat
ttatcgtcacttcatacaacatcagtcacaatattccacattcactcaag
ttaacaacgtaaataaaatgtaaacagttcttcttacagCAGCATATCCA
TACCACTGTAAACCATGTAAAAAAATGCAGCTATGTCCATCCATCACGAA
ACAAACTGGTACATGAAAAATACGTTCAACTGTTCCCAAATCATAGCATG
TACGAGGACTTTCAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAGAAGCACAAGAAGA
CAAAGTCCCTTGATCGATGGtttgatcttaattttcaatgatagtcacag
gattttaaatttaatcaaatcaatgtgtcctacttcctcaacattatttc
ataaaattccaaatcagtacTATATGATGCTCAGAACCAGACAGAGTCTT
TCATTCATCGTAGAGttacttttcacttcattttatttggttcgtgcaaa
atctcatgatacagtgcttttatcgagaaaataatatccACATTCCATGA
TTATATCGAAACGAAGTATTCCGAAGTTATGTAGACTACAGTCTccagag
ttgatttttcaagtcattggatgaacgaaaatgtcccatattttgaagta
cgaaccatgaaaatcttctttgaacaaggctttcttgtcttgatgagttt
cattcacttctcagatccatatatGCACACNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagcatcatagaaa
aataaacattgaaactttcCATAATGATAGTTCAATAATAATATGACCTA
TTTCAGTTAATATTAACACTGCTCAGCCACAAAATGATCAATGGAGGTCT
CGTAAAGATTGCAGtttttctcaataaaaattttccagtCGCCATTTTCT
TCTAGCTCGTTTTTTGAGCAAGACTAGAATCTCGTTCGGTTTTCTCGCGC
CCTTGACGGGAAATACTGATTCGGGTAGTTTTACTTTTTGCGGGAAAAAC
ATGAGCGAGTTTCTTTGCTGTCGAGTTCAACTGTAGCAATACACTATTCC
TTTAACACCGTTACACACATGggtctgaaaatgaataaaaatgttctgaa
CAAAATAAGACCTTTTAAGCAcattaaagccttaaaatttcacaaaatta
agaacagcccagcttAAGCCAAAAAATTTTGGTTCTTATCAAAAAGCGCG
TGGTTTTCGATTTTGAACTTTTGCTTTGGTGTTGTAAAACAGCCCGATGa
agaaatgtttttgtttgaaggTATTGCAAATCTCAGTTATGTTGGTTTGA
TGAAGTCTTAAAAATGAAAGGAAAAACTTTCTAACGcaagttcttttgtt
tttttagctTTGGCAATCATCTGTGATGACTTTTTCGTGCCTTCTCTGGA
AGCGATCagtgaaaaacttgatttaTCAGAAGATGTAGCAGGTGCCACCT
TTATGGCGGCCGGCTCTTCAGCGCCGGAACTTTTCACGTCAATTGTGGGT
GTGACGGTCGAGAGTGACGTCGGTGTCGGAACTATAGTTGGGTAAGTTTT
AAATCATTCTTATTTTGTTGAGTTTTTTTATCTCGAAAACTTATAAATAA
ACTGGTTGGTTTGTATTTGTAAAAAAGAGTTAATTTCTGAGTTACTTTAT
ATTATGGCGTTTTTGTTTCGCCTATAGGCAGTGTTGAAGGCAACCTTCAG
AAATATTTCTGTTTTAGCTCTTCAAGTAGAGGCGAGGACTGACGCCACCA
ATCTTACTAATATCGTATAAAAAAGCATAGGTATAATTTGATAgcttctt
tcatttttataggAGTGCCATATTCAATCTTCTTGGTATTGTTGCATTAT
CGGCAGCTTTTGCTGGTCAGGTAAAAATAATTCTTAAAATCCAGTTGTTT
CTATGTTTTTATTAAGCTGTTTTTCGTGAAATTACTCGAAACCGAGAGGC
TGGGTTCGCTCAGtcaaaatcgggctcagtcaaAATGGGAAACGGGGACG
TGGTATTAGTAAGAGACCCCGCGACGGTTGCAATTTCACTAAATTTCAAA
GGGTGTATTCGACAGGGTCGAGTGTGGTTATTTTCATCGCTCTTTAGGGA
GtgttttatgaagaaaaaagttATCATCTAGCAAGGTCGATATTTTCATC
AGAACTTCTGGATTCAAGATTTCGTCAGTTAGGGTCaaatgtctactaaa
aaattaTATCTCACAAGGCCAACTCCAGCAGTAGGTCCCCATCGCCCGAA
GGTCTGCTCCTGCCTCCTGGCTTATTGGTTTTCGGCCCAGTTCTCTTTTG
CATTGTTCATGTTTTATTTCTTTAGGTTCTACATCTTGATTGGCGACCCT
TGACGCGTGACGCTGCATTTTACTGTTTTTCTATTTGCTTTTTCATCATC
TTTGCATGGGATGGCAAATTTGAAATCTACGAAAGTGTCATTTTACTGGC
CCTCTATTTTCTGTACATCCTTCTGATGAAATTCAATCCGAAGTTGATGG
AGAAGATGGCTCAATGGGGGTAAGGTGTGGCCGATTGTGTGTTCATATTG
TCTACTGAAGCTGCCGTTCTAAAGTAAAGTCTGCTCCAAATAAATGACAG
TATGAACATTTCTTAAGTTCTTGAGATGAACATGTATCATTAAAAGTAAT
ATCTCTTTCGATTTAAATCTTCATGATCGAATTTTCCTCCGTCCTTCTAG
ATCACGAAAAGTGGATCCTTCATCTGACAATAGCAACAAAAGCGATAAAG
AAGATGGCACAGAAACGGTAACATAACTTTTACTAAATAGTTTGTTTATT
gtaaggggggggggcaagtGGGCAAATACAGATAGATGGATATACAGGAT
GACATAAAAAAATGTTGATGAAAAGTAAGAATTCCAATATATTAGGTAGG
TAGTACAGTTTGAAAGATAGTTAACTAACTGATTGTCGGAAATGTCAGTG
ATTGTTCATATTTCGAagctcgaatgtctccttaacttggacggttgtta
atttttcgaaaatttcccaaccccccggaccttattaggaccccccctgt
ttattaatttttaagaatactttcagctgtcaaagagaaggcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035286XLOC_035286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056070-exon-scaffold_267-1491911889:29750..29804TCONS_00056070-exon-scaffold_267-1491911889:29750..29804Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1510915933:29750..29804TCONS_00056070-exon-scaffold_267-1510915933:29750..29804Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1575043694:29750..29804TCONS_00056070-exon-scaffold_267-1575043694:29750..29804Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1491911889:30047..30119TCONS_00056070-exon-scaffold_267-1491911889:30047..30119Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1510915933:30047..30119TCONS_00056070-exon-scaffold_267-1510915933:30047..30119Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1575043694:30047..30119TCONS_00056070-exon-scaffold_267-1575043694:30047..30119Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1491911889:30826..30940TCONS_00056070-exon-scaffold_267-1491911889:30826..30940Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1510915933:30826..30940TCONS_00056070-exon-scaffold_267-1510915933:30826..30940Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1575043694:30826..30940TCONS_00056070-exon-scaffold_267-1575043694:30826..30940Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1491911889:33659..33841TCONS_00056070-exon-scaffold_267-1491911889:33659..33841Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1510915933:33659..33841TCONS_00056070-exon-scaffold_267-1510915933:33659..33841Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1575043694:33659..33841TCONS_00056070-exon-scaffold_267-1575043694:33659..33841Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1491911889:42857..43040TCONS_00056070-exon-scaffold_267-1491911889:42857..43040Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1510915933:42857..43040TCONS_00056070-exon-scaffold_267-1510915933:42857..43040Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1575043694:42857..43040TCONS_00056070-exon-scaffold_267-1575043694:42857..43040Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1491911889:43312..43369TCONS_00056070-exon-scaffold_267-1491911889:43312..43369Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1510915933:43312..43369TCONS_00056070-exon-scaffold_267-1510915933:43312..43369Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1575043694:43312..43369TCONS_00056070-exon-scaffold_267-1575043694:43312..43369Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1491911889:43825..44018TCONS_00056070-exon-scaffold_267-1491911889:43825..44018Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1510915933:43825..44018TCONS_00056070-exon-scaffold_267-1510915933:43825..44018Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1575043694:43825..44018TCONS_00056070-exon-scaffold_267-1575043694:43825..44018Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1491911889:44200..44592TCONS_00056070-exon-scaffold_267-1491911889:44200..44592Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1510915933:44200..44592TCONS_00056070-exon-scaffold_267-1510915933:44200..44592Clytia hemisphaericaexon
TCONS_00056070-exon-scaffold_267-1575043694:44200..44592TCONS_00056070-exon-scaffold_267-1575043694:44200..44592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:29750..44592 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.367447	0	0	0.330284	0	0.315074	0.182321	1.37252	0.616524	0.103794	0.183779	0	0	0	0.0472904	4.89643	2.99395	0.253451	0	0.502749	0
Blast
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BLAST of TCONS_00056070 vs. Swiss-Prot (Human)
Match: NCKX3 (Sodium/potassium/calcium exchanger 3 OS=Homo sapiens GN=SLC24A3 PE=2 SV=4)

HSP 1 Score: 127.487 bits (319), Expect = 9.912e-32
Identity = 85/152 (55.92%), Postives = 115/152 (75.66%), Query Frame = 3 
Query:  378 KGWVALYCXXXXXXXXXXXXXCDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIVGVTV-ESDVGVGTIVGSAIFNLLGIVALSAAFAGQVLHLDWRPLTRDXXXXXXXXXXXXXXXWDGKFEIYESVXXXXXXXXXXXXMKFN 830
            +G V L+ +  + +F ALAI+CDDFFVPSLE I E+L LSEDVAGATFMAAGSSAPELFTS++GV + + DVGVGTIVGSA+FN+L I+ +   FAGQV+ L    L RD+ +Y  S+   I+F +D K   +ES++L+ +Y +YI++MK+N
Sbjct:  107 QGAVVLHVLCAIYMFYALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSSWCLLRDSIYYTLSVIALIVFIYDEKVSWWESLVLVLMYLIYIVIMKYN 258
The following BLAST results are available for this feature:
BLAST of TCONS_00056070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX39.912e-3255.92Sodium/potassium/calcium exchanger 3 OS=Homo sapie... [more]
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