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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056067 ID=TCONS_00056067|Name=TCONS_00056067|organism=Clytia hemisphaerica|type=transcript|length=1730bpRun BLAST on NCBI protein sequence of TCONS_00056067-protein >TCONS_00056067-protein ID=TCONS_00056067-protein|Name=TCONS_00056067-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp MLQCSRPTPIGSIRRLAVIAIFAYAAFKFYGRENTPDYTSKSHGATSRHLRun BLAST on NCBI transcript from alignment at scaffold_267:25181..48946+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056067 ID=TCONS_00056067|Name=TCONS_00056067|organism=Clytia hemisphaerica|type=transcript|length=23766bp|location=Sequence derived from alignment at scaffold_267:25181..48946+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_267:25181..48946+ >TCONS_00056067 ID=TCONS_00056067|Name=TCONS_00056067|organism=Clytia hemisphaerica|type=CDS|length=9384bp|location=Sequence derived from alignment at scaffold_267:25181..48946+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056067 vs. Swiss-Prot (Human)
Match: NCKX3 (Sodium/potassium/calcium exchanger 3 OS=Homo sapiens GN=SLC24A3 PE=2 SV=4) HSP 1 Score: 127.487 bits (319), Expect = 7.432e-31 Identity = 85/152 (55.92%), Postives = 115/152 (75.66%), Query Frame = 2
Query: 392 KGWVALYCXXXXXXXXXXXXXCDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIVGVTV-ESDVGVGTIVGSAIFNLLGIVALSAAFAGQVLHLDWRPLTRDXXXXXXXXXXXXXXXWDGKFEIYESVXXXXXXXXXXXXMKFN 844
+G V L+ + + +F ALAI+CDDFFVPSLE I E+L LSEDVAGATFMAAGSSAPELFTS++GV + + DVGVGTIVGSA+FN+L I+ + FAGQV+ L L RD+ +Y S+ I+F +D K +ES++L+ +Y +YI++MK+N
Sbjct: 107 QGAVVLHVLCAIYMFYALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSSWCLLRDSIYYTLSVIALIVFIYDEKVSWWESLVLVLMYLIYIVIMKYN 258 The following BLAST results are available for this feature:
BLAST of TCONS_00056067 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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