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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056033 ID=TCONS_00056033|Name=TCONS_00056033|organism=Clytia hemisphaerica|type=transcript|length=716bp
AATTATGTTGGCATGGCATTCTTATAATATGTGTTTCCTTCAATTCAGGT
TTTTTTGTGGAGCTGCTAGAACAAAATGATCAAGCTACTGGTTGTGACCC
TTTTGGCTGTCACCATGTTTACAGAGACAGAAGCAGCCGGCTGCCAACTG
GGGTTTTATAACGTTCCTAACGGCGGAATCATCAATACTGGCAACGAATT
CAAAAAATGCCAAGGTGGTCAGCTAGTCCAACTTTATTCTAAACGAGATA
TACAAGACGATGTATCAATCGAAGAATATTTTGCCATCCCTCAAAGAAGA
GCATTCCAACGTAGAAGAGATTACGAAAGTTATTACTAAACAAACACTGA
ATAATAATCAGAACACTGTACATAAAATTTATTGATTACAAAATCTTTGA
TCTTTGATCAAAAAGTCAGGGCTCACAATCGTTCTAATGTTATCTACTAT
TtccaaaatactcaaaaaaattcattcttaTTCTTTAGTATTTGGGCTCC
TTGTCATCAATTCTTAAGTAATAGTTTATGGAAGTTCTTCCAAAATCAGT
AGACTTAGATTTTTCTAGTAAAAAAGAACATATTAGTTCGTATTTTAGGT
TAAATTTTAGAATGGACATCTTTTTTATACTTTGATGAGAATAAAATCTT
TGAGCCATGTAAAATGGTAGACGACAACAACATGACAgctaaaaagcctt
aaatttgTGCATCTTG Run BLAST on NCBI transcript from alignment at scaffold_266:591657..593163- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056033 ID=TCONS_00056033|Name=TCONS_00056033|organism=Clytia hemisphaerica|type=transcript|length=1507bp|location=Sequence derived from alignment at scaffold_266:591657..593163- (Clytia hemisphaerica)
AATTATGTTGGCATGGCATTCTTATAATATGTGTTTCCTTCAATTCAGGT
TTTTTTGTGGAGCTGCTAGAACAAAATGATCAAGCTACTGGTTGTGACCC
TTTTGGCTGTCACCATGTTTACAGAGACAGAAGCAGCCGGCTGCCAACTG
GGGTAAAACTTTTAAAAGCCTAGAAATTGAATCTTCTTAAGATTTGTATT
GTATTTTATTTGGCAAGGATCATTACAATAGGATCTTAAGCAGATATTGA
AAAGATGGAAGTAAAGGCTACTACGCATTTTAACCCTATAGTACCTGGTG
ACCTCTCATACGAGGACAAAATTTTCCCAGGTTAATTTAAAGTTCGACGA
GAAATGATAGAGCTTTTTTTCATCTGAAACTTCCAGCAAAAACTGTTTAG
ACAAAAACAATTAACATTATTGTAGATTTAAAAAAAGACAATATATCGAA
TACTTTCAATTTTAAAATTTTTGAAACTAGCTCATCGAAAGCTTCATTTT
GGTATATAAAACATAGAGCGGTTTACTGGGGAAGGCACCAAGGTACTATC
ATAGTTTCGAGAGGGGTCAAGACCCCCCCCCTTAGGTAAGAGGAACCCCC
CTTAAGTGCTAACCCCCCTTTAGGAAATTCATTTAAAATTTCACCCCCCC
CCCCCCCAAAAAAAAAATCAGTATAAATGAAACGATTGTACAAGAGTCAT
AATTCAAGGAAGATCCCCCTTAAGAAGACCCCCCCCCTTAGGTAAGAAGA
CCCCACCTTAACTGGCAACCCCCCCTTAGGAAAGTCAAACTTTTAACACA
CCCCCTTGCTTTTGGTTCATCAAAACCCAAGACCCCCCCTAAATGTAGGG
GGTAGAAACTATGAGACTATAGGATTAATATCAACTATTTATCATATTTG
AAAAGAGATTTAAAATATATTTTTTCTCTATCGTCTACCGTAGGTTTTAT
AACGTTCCTAACGGCGGAATCATCAATACTGGCAACGAATTCAAAAAATG
CCAAGGTGGTCAGCTAGTCCAACTTTATTCTAAACGAGATATACAAGACG
ATGTATCAATCGAAGAATATTTTGCCATCCCTCAAAGAAGAGCATTCCAA
CGTAGAAGAGATTACGAAAGTTATTACTAAACAAACACTGAATAATAATC
AGAACACTGTACATAAAATTTATTGATTACAAAATCTTTGATCTTTGATC
AAAAAGTCAGGGCTCACAATCGTTCTAATGTTATCTACTATTTCCAAAAT
ACTCAAAAAAATTCATTCTTATTCTTTAGTATTTGGGCTCCTTGTCATCA
ATTCTTAAGTAATAGTTTATGGAAGTTCTTCCAAAATCAGTAGACTTAGA
TTTTTCTAGTAAAAAAGAACATATTAGTTCGTATTTTAGGTTAAATTTTA
GAATGGACATCTTTTTTATACTTTGATGAGAATAAAATCTTTGAGCCATG
TAAAATGGTAGACGACAACAACATGACAGCTAAAAAGCCTTAAATTTGTG
CATCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056033-exon-scaffold_266-1575043694:593012..593163 | TCONS_00056033-exon-scaffold_266-1575043694:593012..593163 | Clytia hemisphaerica | exon |
| TCONS_00056033-exon-scaffold_266-1575043694:591657..592220 | TCONS_00056033-exon-scaffold_266-1575043694:591657..592220 | Clytia hemisphaerica | exon |
| TCONS_00056033-exon-scaffold_266-1510915933:593012..593163 | TCONS_00056033-exon-scaffold_266-1510915933:593012..593163 | Clytia hemisphaerica | exon |
| TCONS_00056033-exon-scaffold_266-1510915933:591657..592220 | TCONS_00056033-exon-scaffold_266-1510915933:591657..592220 | Clytia hemisphaerica | exon |
| TCONS_00056033-exon-scaffold_266-1491911889:593012..593163 | TCONS_00056033-exon-scaffold_266-1491911889:593012..593163 | Clytia hemisphaerica | exon |
| TCONS_00056033-exon-scaffold_266-1491911889:591657..592220 | TCONS_00056033-exon-scaffold_266-1491911889:591657..592220 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:591657..593163 - |
Blast
The following BLAST results are available for this feature:
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