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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055987 ID=TCONS_00055987|Name=TCONS_00055987|organism=Clytia hemisphaerica|type=transcript|length=1464bp
TATGATTTTAGATAATGGTTTGAAATTATTACTATGATGTCAAAAAGACT
AGTCTTTGGCTTATCAAAGAGATGTTATAATGCCCATATTAATAAGAGAA
ATCTACTGCGTAAGCAATACTTGCAAAGTAGCAATCTACAGGTGTCTAAA
TATCAGTCTCTGACCACTGACGCTGATTCAAACTTGAAACTTAATAttga
tggaacagcaattacaCAGCTTCAGAAAACTTTAGAAGACTCTCAATTTT
TACGAGTGTTGGTTGAAGGTGGAGGCTGCTCAGGATTTCAATACAAGTTT
GAAGTTGATTCAGAAATTGACGATGAAGAAGATTTGATATTTGAAAATGA
TGGTGTCAAAGTTGTATCTGATATTGAATCAGTGAAAATCTTGAATGGAA
GTAAAGTTGAATATCATGTTGATCTGATACGAGCTGGTTTTCGTATCACT
GATATTCCAATGGCTGAAAAAGGCTGCTCTTGTGGTGTTTCATTTTCTGT
AAAACTTGTTTGCTTTTTGGAATATAATGACAACACCTAGGAAAGAAATT
AAAACACCAATCAAAGCAAGAATTTTATCAGAGGGCACTCCCTCTCCGAA
AACCCCAAGGACACCAAGAACACCAACAACAGTCGATAGCAGCATCAAAC
GCAGATTTTCAGACATTCTTGTCAATCTACACAAATGTGTTCAAATTTGG
GAAACTGATAATCAAGCCAGTTTTAACACTGCAAATACTTTGATAAACCT
TTACTCGCAATGGAAAACAGTGAAAGACAGCACACAACTGGATGATATTG
TTTCAAAGGAatgtaaagaaaaatatcagctgaaattgattaAAACACGA
GAAGATCTTTTAAAACAGCTAAAAGTGCACCAAtccaaacttgaaaaatt
aattaccaAAATGAATGGGTTTAAAGAAAACATCAGAGCCATATATTTTC
TTGGTATGGTTTCTAGTGATGTAGAGTCTTCTGTTTGTCTGGATGAGAGT
GCTGCTCAAGATTGTGATTTTAATTTAGAACCTGTTATCTTCTCCACATG
GACTTCAGAAATGTTTTTACATAAAATCGAGGAAATGTTAAGTTGTTATA
CAAAAGAATAtatacaaaaattgaaattttatgatttgTTTCTGAAATTC
AGAGTAAATGAGAAAGGCGGAGATGATACAAGCAAGCTATCGCAGTGCGT
CAGCATCTGGTTACACCAGCCATATCTTGATGACCATTGTAGATTTCTTT
TAGAGTGTATGCTTGTTGAGGCTGAATTGAAATGAtatattgtttgaaaa
ttttatatttttgtaaattgttttttattacattttaaaaaaCTCTGAAA
CTTTATATACTCCCACCCATGTCTTTTCTGCACAGCTTAATGTTTCATGA
GCAGAATGATTTGTAGCAATGAAAAAGTAACGGTGATCAAAAATGATTAT
AGCTCTTCATGGAG Run BLAST on NCBI transcript from alignment at scaffold_266:162531..164592- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055987 ID=TCONS_00055987|Name=TCONS_00055987|organism=Clytia hemisphaerica|type=transcript|length=2062bp|location=Sequence derived from alignment at scaffold_266:162531..164592- (Clytia hemisphaerica)
TATGATTTTAGATAATGGTTTGAAATTATTACTATGATGTCAAAAAGACT
AGTCTTTGGCTTATCAAAGAGATGTTATAATGCCCATATTAATAAGAGAA
ATCTACTGCGTAAGCAATACTTGCAAAGTAGCAATCTACAGGTGTCTAAA
TATCAGTCTCTGACCACTGACGCTGATTCAAACTTGAAACTTAATATTGA
TGGAACAGCAATTACACAGCTTCAGAAAACTTTAGAAGACTCTCAATTTT
TACGAGTGTTGGTTGAAGGTGGAGGCTGCTCAGGATTTCAATACAAGTTT
GAAGTTGATTCAGAAATTGACGATGAAGAAGATTTGATATTTGAAAATGA
TGGTGTCAAAGTTGTATCTGATATTGAATCAGTGAAAATCTTGAATGGAA
GTAAAGTTGAATATCATGTTGATCTGATACGAGCTGGTTTTCGTATCACT
GATATTCCAATGGCTGAAAAAGGCTGCTCTTGTGGTGTTTCATTTTCTGT
AAAACTGTAAACTTATTTTTTAATAAATTTTCCTTTGAGAATTATGTGTT
TTGTATATTTGTAATGAATTATAATCTATGACTCTGTATCAAAAACCTCA
ATCCCTGAGATTCTACCCTTCCAATATTGTTTATGAGCAATTGTTGTAAA
ATTGTTCAAGAGGGACCATTTTACCCACTACAAAAACCTTGACAACTTCT
AAATTTAATAAATAAGAGGTTCAGATATAGTCAAAGAACTTGAATAAGCA
TTTTAATTTCTATTTTCCAAACAGATTTTTCAAATAAGTTATGGTCAGCT
CTTTTTAGTGTTATTGAAGAAAAAAATATTATAATCATAGGTGTGTCACC
TGGTGTCCCATAAATAATATGACTTCATAGAAATATTCAAGCCCCCTAAA
ACATGACCCTAAATATGCACTCTCACTCTCAGAGAGAAAGAGAGTACTTT
GCTGTAGAATATGTATTTATAACCTCGGGTGGGTTTCTTTTCATTACACA
TACTTTGATTTTGAAGGTTAAGAAACTGATTTTCTAGTTTTTTGAAAGTG
TTCTAAATTTAGTCTAGGCTTTTCATCTTAGAATTTTTGTCCTTTTATTT
TTAGTGTTTGCTTTTTGGAATATAATGACAACACCTAGGAAAGAAATTAA
AACACCAATCAAAGCAAGAATTTTATCAGAGGGCACTCCCTCTCCGAAAA
CCCCAAGGACACCAAGAACACCAACAACAGTCGATAGCAGCATCAAACGC
AGATTTTCAGACATTCTTGTCAATCTACACAAATGTGTTCAAATTTGGGA
AACTGATAATCAAGCCAGTTTTAACACTGCAAATACTTTGATAAACCTTT
ACTCGCAATGGAAAACAGTGAAAGACAGCACACAACTGGATGATATTGTT
TCAAAGGAATGTAAAGAAAAATATCAGCTGAAATTGATTAAAACACGAGA
AGATCTTTTAAAACAGCTAAAAGTGCACCAATCCAAACTTGAAAAATTAA
TTACCAAAATGAATGGGTTTAAAGAAAACATCAGAGCCATATATTTTCTT
GGTATGGTTTCTAGTGATGTAGAGTCTTCTGTTTGTCTGGATGAGAGTGC
TGCTCAAGATTGTGATTTTAATTTAGAACCTGTTATCTTCTCCACATGGA
CTTCAGAAATGTTTTTACATAAAATCGAGGAAATGTTAAGTTGTTATACA
AAAGAATATATACAAAAATTGAAATTTTATGATTTGTTTCTGAAATTCAG
AGTAAATGAGAAAGGCGGAGATGATACAAGCAAGCTATCGCAGTGCGTCA
GCATCTGGTTACACCAGCCATATCTTGATGACCATTGTAGATTTCTTTTA
GAGTGTATGCTTGTTGAGGCTGAATTGAAATGATATATTGTTTGAAAATT
TTATATTTTTGTAAATTGTTTTTTATTACATTTTAAAAAACTCTGAAACT
TTATATACTCCCACCCATGTCTTTTCTGCACAGCTTAATGTTTCATGAGC
AGAATGATTTGTAGCAATGAAAAAGTAACGGTGATCAAAAATGATTATAG
CTCTTCATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055987-exon-scaffold_266-1575043694:164087..164592 | TCONS_00055987-exon-scaffold_266-1575043694:164087..164592 | Clytia hemisphaerica | exon |
| TCONS_00055987-exon-scaffold_266-1575043694:162531..163488 | TCONS_00055987-exon-scaffold_266-1575043694:162531..163488 | Clytia hemisphaerica | exon |
| TCONS_00055987-exon-scaffold_266-1510915933:164087..164592 | TCONS_00055987-exon-scaffold_266-1510915933:164087..164592 | Clytia hemisphaerica | exon |
| TCONS_00055987-exon-scaffold_266-1510915933:162531..163488 | TCONS_00055987-exon-scaffold_266-1510915933:162531..163488 | Clytia hemisphaerica | exon |
| TCONS_00055987-exon-scaffold_266-1491911889:164087..164592 | TCONS_00055987-exon-scaffold_266-1491911889:164087..164592 | Clytia hemisphaerica | exon |
| TCONS_00055987-exon-scaffold_266-1491911889:162531..163488 | TCONS_00055987-exon-scaffold_266-1491911889:162531..163488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:162531..164592 - |
Blast
BLAST of TCONS_00055987 vs. Swiss-Prot (Human)
Match: ISCA2 (Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Homo sapiens GN=ISCA2 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 2.625e-26 Identity = 58/165 (35.15%), Postives = 96/165 (58.18%), Query Frame = 1
Query: 16 WFEIITMMSKRLVFGLSK-RCYNAHINKRNLLRKQYLQSSNLQVSKYQSLTTDADSNLKLNIDGTAITQLQKTLEDSQFLRVLVEGGGCSGFQYKFEVDSEIDDEEDLIFENDGVKVVSDIESVKILNGSKVEYHVDLIRAGFRITDIPMAEKGCSCGVSFSVKL 507
W +T ++R V + R A + + ++ SS+ + + Q TD + + +L + E S+FLR+ VEGGGCSGFQYKF +D+ I+ +D +FE G +VV D +S+ + G++V++ +LIR+ F++ + P A++GCSCG SFS+KL
Sbjct: 5 WGSSLTAATQRAVTPWPRGRLLTASLGPQA---RREASSSSPEAGEGQIRLTD-----------SCVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVIN-PDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQGCSCGSSFSIKL 154
The following BLAST results are available for this feature:
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