TCONS_00055980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055980
Unique NameTCONS_00055980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1950

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055980 ID=TCONS_00055980|Name=TCONS_00055980|organism=Clytia hemisphaerica|type=transcript|length=1950bp
AAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTACCAAA
TGTTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGGGATGC
TGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTATGTGCTGGT
TTGTGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCATCAAATTAAgtgc
acccttattgaaactTCGTCCGCGAAAAGACTTGGTAGAAACACTCCTTC
ATGAAATGATTCACGCTTTACTGTTTGTCACAGATAATAACAAGgATCAC
GATGGACATGGACCAGAATTTCACAAACACATGTACCGAATCAATAAAGA
GACTGGGACCAACATTTCAgtttatcattcttttcacgACGAGgtGGATC
ACCATAGACAACATTGGTGGCGTTGTGATGGTCCTTGTGTTAAACGCCCT
CCTTTCTTCGGCATCGTCAGGCGTGCTATGAATCGAGCGCCCTCTCCGCG
CGACCGCTGGTGGAATGACCACAAACAAAAATGTGGAGGAGCTTTCACGA
AAATCAAGGAGCCAGAGAAACCGGTGAAGCAATCTaagaaaagtaaaaag
ttaGAAGAAACTGGACAAAAGCTTGGTTCCTCAAGTTCTGAAAGCAACAA
AAATAATAAGAATGCAATCACAAACTGGTTTCAGAAAACAGATTCTTCAA
AGCTTTCAACCTCGTCTAATTCATCTAACTCCATCAGCATAGATTGTGAA
GAAGATCTGAAACCTCCGATAAACCCGTGGGCAGACGATAGTTACACCAG
TAATTCAAAGAACAGTAAACCAACAAGCAAaactaactctaaccctaaga
CAAAAAACAATACTTCGAACCATGGAAACCAAAACAAAGGTAAATACCCA
GCAGGTTCAACAGCCGTTAAAGGAGGTGGGTCGCGAACTTCAACTATCAC
CTCCAAGGGGAAGAACCCTCCGACCAATGAGAATGACATTTATCGGAGCT
CCTCCACAGGTGCTTCAAGTAATATCTACGGCTTCAAAATGTCTGCTAAT
AACAAAGAAGACTCAGCAAAGCAACCCTTAGCCTCCTTTTCAGGCAACGG
CAAACGAATAAGCTCAACAAATGACGAACCTTCGGGAAACAGTGgacgag
aaaattttttgaaacgatTAGAAAATAACATGAAAGGGAATACTCAAAGA
AAACCCTCAACAAATTCATCACAAATTAGTATCCCTCCCTCTTCAAACAC
TTTCCGTAAACCAAAAGATTCTGATTTCTCAATGAAAAACCAAAATAAGG
ACAGAACTCAAAAGAAAGAAACCACTGAAAAAACTCCTCCGAACCAACCC
TCGTTCTCAAGAAATCCTacaacaaaccaaaacaagTCTCCCTATACTAA
CAAACAACCACATAACGCACAATCAAATTTAACAAACACTAAACGAAACC
TTTCGTCTTCTTCTTCACAAAACTCTTCATCAACCTCACCGAAAAAGAct
aaattttcgaaagaaacGCACATGGTTATTTCTTCAGACGAAGAGGACAA
TGTACAGCAACAACAAAATCTTGTGGATTGCCCTGCGTGTCCTATGAGAG
TTCCtgaacatcttttgaatgaacacttGGATGAATGCTTAACTTCTTGA
CACTTCTACCGATTGAGAAGCTTCAACCCTACCCAGACCGCAATTTTAAC
GAGTTTTGTACAGTATGTGTTGTTGGGACTTCAGTTATTTTCGGACCCTC
ATTCTTtcgtttcaatgtttttttttagtttttttagtcatttttaccAG
GGTCATCTTGTATGTAAGATCATCGTTGCCTTACTGCAAGTATGACTCGT
tatattttgtttcattttttactGTGAATTtagaaaactgaaaatattta
ttttttatcccAAAATTATATCAACGATTTCATGAATCATAGAGCCTCGC
Run BLAST on NCBI

transcript from alignment at scaffold_266:117022..122028-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055980 ID=TCONS_00055980|Name=TCONS_00055980|organism=Clytia hemisphaerica|type=transcript|length=5007bp|location=Sequence derived from alignment at scaffold_266:117022..122028- (Clytia hemisphaerica)
AAACTCTCCATCGTTGATCCAAGTTGGGAGTTAATCGATCCTGTACCAAA
TGTTCATGAACTTTTCGTCCAATTCAACGCAGCTTATTTTGATGGGATGC
TGGCTAGTGTATCCGTACAATGGAGCCCAAGGATGACCTTGTAAGATTTG
ATCAATCTTCCCTTGCTCATTTCTTTTTTTCCCAGATCATTTTTAATAAG
TATAACGGAAAAAACTTTTTATGTGACTGCCACAATGTTTGATTAAAATT
AACAGAGTGGATAGTGTATTTTACGGTGTGCAAACCTATGACATTCTAAG
ATTTTGAATAATGTCCAACTGATACCGACACAAGGATCTATTTTATCCAA
ATATGTCGACACGGGACTTGAAATGTTAAGCGAAAATAAAGTTACATTTA
CTTTCATTTGTTGTCTGAAAGAGGTTACCTGGTCCAAAGATCCACTTTGA
AGCTAATTCCCTTCCTTTGTCTGNGTTTACTTTCATTTGTTGTCTGGAAG
AGGTTACCTGGTCCAAAGATCCACTTTGAAGCTAATTCACTTCCTTTGTC
TGAAGGTTTCTTCTGACAAAAAGCTCAGTCCTTCTTGAATTTGAGAGTTT
TCAACAAAGATAACAAGACCTACATTATCTAAACAAATGAATGTGCTTCT
ACTTATGGCCAGGTTATGAACAGTACCTCATTTGTCATTCCGTAAAAGTT
CGTTGACTTATCGGACGTGTTTAAACGAAAAGCAGTAGGTCAGGTGACCT
ACTTAATCTGTTCGGTTTGACGATCCAAATAATCATTATCCTCTACAGAG
TATCGCTTTTTTGATGTGGAAACTTTTGAGGTTTTTTGGAAATTGACGTT
TGTCTGGTCGTGGTTTGACCTGGCATCTGGGGAAGCTCTATCTGGGTGTA
ATGAAGGTTTCAAAATGTGAAATCAATATATGTTTTTAGTGGTTTTCGCA
CATGTTACTCCCATCTTGCTGACTATACTAATATATTAGTTTTATTATGT
GACTGGAATTTCGCACATGCTTCTTCTATTCTATATTGCTGACTACAATT
TATGTATATATGGCTACAATAATTTTCAAATTACGAAATCATACAGCTTG
GATATCATTACTCTCTTAAAGATTTGGCCATTAGAAAATATCTTCTCAGT
TATTCATCAGAAAAATGCTTCATCCCTCTTTCCTTAGATGTGCTGGTTTG
TGCTACTATGAGCGGCGTGGCAAGTGTTGCTCCANATTTACTTTCATTTG
TTGTCTGAAAGAGGTTACCTGGTCCAAAGATCCACTTTGAAGCTAATTCC
CTTCCTTTGTCTGAAAGTTTCTTTTGACAAAAAGCTCAGTCCTTTTTGAA
TTTGAGAGTTTCCGACAAAGATAATAAGACCAACATGATCTAAACAAATA
AATGTGCTTCTGTTTATAGCCAGGTTATGAACAGTACCTCATTTGTCATT
CCGTAAAAGTTCGTTGACTTATCAGACGTGTTTAAAGTGGGGGCGTACGG
TTTTTCGGAATTGCGGAAATCGACCCTTTTTTCTTCGGTATTTCGGAATT
CTAAAATTGTTTCGGAATGGAAAATCCATAATTTTTTGCTTCGAAATTTC
GGTATTATAAAGTTTTTATCCCCTTTTTTCGGAATTCATACACGAAAAAT
CAAATTTGATGAAAAATTAGTCAAAACGAAGAAAAATACCCAAAAAAAAT
CGGTATCGGAATTGCAAGTACTCTTTTACGGAATTCCGGAAACTTTGGCA
AAGTTATTCGGTATTTCGGCAATCGCAAAACCCGTACGCCCCCCCCTTTA
AACGAAAAGCAGTAGGTCAGGTGACCTACTTTATTTGTTCATAAATTCGA
TTGTTGACGATCCAAATAATCATTATCCTCTACAGAGTATCGCTTTTTGA
TGTGGAAACTTTTGAGGTTTTTTGGAATGCGATGTTTGTCTGGTCGTGGT
TTGACCTGCCATCTGGGGAAGCTCTATTTGGGTGTAATGAAGGTTTCAAA
ATGTGAAACCAATATGTTTTTAGTGGTTTTCGCACATGTTACTCCCATCT
TGCTGACTATACTAATATATTTGTTTTATTATGTGACTGGAATTTCGCAC
ATGCTTCTTCTATTCTATATTGCTGGCTACAATTTATGTATATATGGCTA
CAATAATTTTCAAATTACGAAATCATACAGCTTGGATATTATTACTCTCT
TAAAGATTTGGCCATTAGAAAATATTTTCTCAGTTATTCATCAGAAAAAT
GCTTCATCCCTCTTTCCTTAGATGTGCTGGTTTGTGCTACTATGAGCGGC
GTGGCAAGTGTTGCTCCATCAAATTAAGTGCACCCTTATTGAAACTTCGT
CCGCGAAAAGACTTGGTAGAAACACTCCTTGNATCAAATTAAGTGCACCC
TTATTGAAACTTCGTCCGCGAAAAGACTTGGTAGAAACACTCCTTGTAAG
AATACTCTCCTTGTACAATTCTTCCTCTGTCGGGATTACTATTCACGGCC
ATGTCTGTCTCTGAAAACTTATTAAGTGAACGTAGTTAAAACTAAATTGA
AATTGAATTTAATTGAAACCTTTGTTATTAAATTCATTTTCGAAAAGCTG
GTAAAATTGTTTTTTACTTTTCAGCATGAAATGATTCACGCTTTACTGTT
TGTCACAGATAATAACAAGGTACTGTTCTGTTCTTGTTTATTCGTATTTC
CGGGCGGGGGGGGGGGGGGGGGGGGGGGGCNAATAGCACTTTCTGTTGGT
TTCTTTAAAGAAGGTAACACAAATTGGTTTTCCGTTGGTTAATGTTCTAA
TAAAAACTGTCGTGTCCATTTTCGAAACCTTGCTATCGATTTCGCCCTCG
TTAGTTGAATCATAACATGGATCTACATTATGAACAAAATGTCACGCCTA
TCCCGACCTTATTTCCGTAGATATGAGATGCAGACCATTCTACACTTTTT
CACTTTTCTTTTGTAGGATCACGATGGACATGGACCAGAATTTCACAAAC
ACATGTACCGAATCAATAAAGAGACTGGGACCAACATTTCAGTATGAATC
TTTTCATTATGTTGTGTCGACCATCAAAATTTATGCCAATATTTCAGAGA
TTTTCCATTTTCACGCGCTTTGAAAATTCCTACAGTGTCTTCTTTCGTGA
TTTAACCAACAATTAGCTTGTGCGGATGCAAAATTGAGTCCAAATTGATA
TGACAATCTAAAATATTTGACTTTGATTTCATTTTATCCACTTTTTAGGT
TTATCATTCTTTTCACGACGAGGTAAGCAAGATATTTGTTTACTATTTGA
TCTGGATGTCCNTTATCATTCTTTTCACGACGAGGTAAGCAAGATATTTG
TTTACTATTTGATCTGGATGTCATTCGCCCATTAAAACCTATTGCATGAA
CTTCAGTGTGTTTTTTTCAAGCATTGCATCGTAAATTTATTTTCTTTTAG
GTGGATCACCATAGACAACATTGGTGGCGTTGTGATGGTCCTTGTGTTAA
ACGCCCTCCTTTCTTCGGCATCGTCAGGCGTGCTATGAATCGAGCGCCCT
CTCCGCGCGACCGCTGGTGGAATGACCACAAACAAAAATGTGGAGGAGCT
TTCACGAAAATCAAGGAGCCAGAGAAACCGGTGAAGCAATCTAAGAAAAG
TAAAAAGTTAGAAGAAACTGGACAAAAGCTTGGTTCCTCAAGTTCTGAAA
GCAACAAAAATAATAAGAATGCAATCACAAACTGGTTTCAGAAAACAGAT
TCTTCAAAGCTTTCAACCTCGTCTAATTCATCTAACTCCATCAGCATAGA
TTGTGAAGAAGATCTGAAACCTCCGATAAACCCGTGGGCAGACGATAGTT
ACACCAGTAATTCAAAGAACAGTAAACCAACAAGCAAAACTAACTCTAAC
CCTAAGACAAAAAACAATACTTCGAACCATGGAAACCAAAACAAAGGTAA
ATACCCAGCAGGTTCAACAGCCGTTAAAGGAGGTGGGTCGCGAACTTCAA
CTATCACCTCCAAGGGGAAGAACCCTCCGACCAATGAGAATGACATTTAT
CGGAGCTCCTCCACAGGTGCTTCAAGTAATATCTACGGCTTCAAAATGTC
TGCTAATAACAAAGAAGACTCAGCAAAGCAACCCTTAGCCTCCTTTTCAG
GCAACGGCAAACGAATAAGCTCAACAAATGACGAACCTTCGGGAAACAGT
GGACGAGAAAATTTTTTGAAACGATTAGAAAATAACATGAAAGGGAATAC
TCAAAGAAAACCCTCAACAAATTCATCACAAATTAGTATCCCTCCCTCTT
CAAACACTTTCCGTAAACCAAAAGATTCTGATTTCTCAATGAAAAACCAA
AATAAGGACAGAACTCAAAAGAAAGAAACCACTGAAAAAACTCCTCCGAA
CCAACCCTCGTTCTCAAGAAATCCTACAACAAACCAAAACAAGTCTCCCT
ATACTAACAAACAACCACATAACGCACAATCAAATTTAACAAACACTAAA
CGAAACCTTTCGTCTTCTTCTTCACAAAACTCTTCATCAACCTCACCGAA
AAAGACTAAATTTTCGAAAGAAACGCACATGGTTATTTCTTCAGACGAAG
AGGACAATGTACAGCAACAACAAAATCTTGTGGATTGCCCTGCGTGTCCT
ATGAGAGTTCCTGAACATCTTTTGAATGAACACTTGGATGAATGCTTAAC
TTCTTGACACTTCTACCGATTGAGAAGCTTCAACCCTACCCAGACCGCAA
TTTTAACGAGTTTTGTACAGTATGTGTTGTTGGGACTTCAGTTATTTTCG
GACCCTCATTCTTTCGTTTCAATGTTTTTTTTTAGTTTTTTTAGTCATTT
TTACCAGGGTCATCTTGTATGTAAGATCATCGTTGCCTTACTGCAAGTAT
GACTCGTTATATTTTGTTTCATTTTTTACTGTGAATTTAGAAAACTGAAA
ATATTTATTTTTTATCCCAAAATTATATCAACGATTTCATGAATCATAGA
GCCTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035235XLOC_035235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055980-exon-scaffold_266-1575043694:121889..122028TCONS_00055980-exon-scaffold_266-1575043694:121889..122028Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1575043694:119649..119757TCONS_00055980-exon-scaffold_266-1575043694:119649..119757Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1575043694:119360..119404TCONS_00055980-exon-scaffold_266-1575043694:119360..119404Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1575043694:118988..119062TCONS_00055980-exon-scaffold_266-1575043694:118988..119062Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1575043694:118757..118780TCONS_00055980-exon-scaffold_266-1575043694:118757..118780Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1575043694:117022..118578TCONS_00055980-exon-scaffold_266-1575043694:117022..118578Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1510915933:121889..122028TCONS_00055980-exon-scaffold_266-1510915933:121889..122028Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1510915933:119649..119757TCONS_00055980-exon-scaffold_266-1510915933:119649..119757Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1510915933:119360..119404TCONS_00055980-exon-scaffold_266-1510915933:119360..119404Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1510915933:118988..119062TCONS_00055980-exon-scaffold_266-1510915933:118988..119062Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1510915933:118757..118780TCONS_00055980-exon-scaffold_266-1510915933:118757..118780Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1510915933:117022..118578TCONS_00055980-exon-scaffold_266-1510915933:117022..118578Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1491911889:121889..122028TCONS_00055980-exon-scaffold_266-1491911889:121889..122028Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1491911889:119649..119757TCONS_00055980-exon-scaffold_266-1491911889:119649..119757Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1491911889:119360..119404TCONS_00055980-exon-scaffold_266-1491911889:119360..119404Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1491911889:118988..119062TCONS_00055980-exon-scaffold_266-1491911889:118988..119062Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1491911889:118757..118780TCONS_00055980-exon-scaffold_266-1491911889:118757..118780Clytia hemisphaericaexon
TCONS_00055980-exon-scaffold_266-1491911889:117022..118578TCONS_00055980-exon-scaffold_266-1491911889:117022..118578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:117022..122028 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.03602e-09	2.79936	1.89974	0.814727	1.84382	1.03045	0.00566664	1.64542	0.578321	0.00102742	0	0.000232742	0.6455	8.93242e-05	0	0	0.00251921	0	3.12349e-05	4.02869e-09	0	6.88877	7.38626	0	0	9.56748e-10	0
Blast
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BLAST of TCONS_00055980 vs. Swiss-Prot (Human)
Match: SPRTN (SprT-like domain-containing protein Spartan OS=Homo sapiens GN=SPRTN PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.063e-87
Identity = 123/184 (66.85%), Postives = 149/184 (80.98%), Query Frame = 1 
Query:    4 LSIVDPSWELIDPVPNVHELFVQFNAAYFDGMLASVSVQWSPRMTLCAGLCYYERRGKCCSIKLSAPLLKLRPRKDLVETLLHEMIHALLFVTDNNKDHDGHGPEFHKHMYRINKETGTNISVYHSFHDEVDHHRQHWWRCDGPCVKRPPFFGIVRRAMNRAPSPRDRWWNDHKQKCGGAFTKI 555
            LS+VD SWEL+DP P++  LFVQFN  +F G L +V V+WS RMTLCAG+C YE +G  CSI+LS PLLKLRPRKDLVETLLHEMIHA LFVT+N+KD +GHGPEF KHM+RIN  TG NI+VYH+FHDEVD +R+HWWRC+GPC  RPP++G V+RA NR PS  D WW +H++ CGG + KI
Sbjct:   29 LSLVDASWELVDPTPDLQALFVQFNDQFFWGQLEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYYGYVKRATNREPSAHDYWWAEHQKTCGGTYIKI 212
The following BLAST results are available for this feature:
BLAST of TCONS_00055980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPRTN1.063e-8766.85SprT-like domain-containing protein Spartan OS=Hom... [more]
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