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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055964 ID=TCONS_00055964|Name=TCONS_00055964|organism=Clytia hemisphaerica|type=transcript|length=575bp
GTATCTGATCCTTATTGCCATTCCATTAGCAATGATCATTTATGgttttg
ttGGTTTGGGACATTGCAGTGTTCAACCATTTATCCCGAAATTTATGATA
ACCAGTGGCTTCATATCagccatatttttctttttatttcttgtgGCATG
GGCAACTGGTTCCAAAGATGGGTCTTCATGTGAGTATGCTGCAGTATTTG
GCTTCGTAGTTCTTTTGGGAATCCAAATAGCAGGAGCTCTTTATATATTT
GATATTGATTCTTCGAAAGTTATTGATGGAGTAAATTGCGACAAAGATTT
GTACTGGTTCGCTTTTGCATTACTTATAATATTTTTGGCATCATTTTTTG
TGCTCGGCGTTATTTTTATTGCGTACATCAATAAAAACTAACACGAGTCA
AATGcaaacataaaattctcaagtCGATCGCCAATTTCATTCTTGTACAG
TCGATTCAACACTTTGCTCTTGAAAAAGTAATCAAGCTTGTAAATGAATG
TTTTATATATTGTTCTTTATTTGGAATTAAAAGATAAACCCCTCAAAATA
ATCTCCAGGGTATTACGTatttctt Run BLAST on NCBI protein sequence of TCONS_00055964-protein >TCONS_00055964-protein ID=TCONS_00055964-protein|Name=TCONS_00055964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
YLILIAIPLAMIIYGFVGLGHCSVQPFIPKFMITSGFISAIFFFLFLVAW
ATGSKDGSSCEYAAVFGFVVLLGIQIAGALYIFDIDSSKVIDGVNCDKDL
YWFAFALLIIFLASFFVLGVIFIAYINKN Run BLAST on NCBI transcript from alignment at scaffold_266:676835..682163+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055964 ID=TCONS_00055964|Name=TCONS_00055964|organism=Clytia hemisphaerica|type=transcript|length=5329bp|location=Sequence derived from alignment at scaffold_266:676835..682163+ (Clytia hemisphaerica)
GTATCTGATCCTTATTGCCATTCCATTAGCAATGATCATTTATGGTAAGT
TTACTTCATTTTGTTTTTCGCTTGTCCAATCATAGTCCAGGAGCCAAACc
tgaaaatgacattttgcCCCGCATTTTGCTTagcccaagattctacagga
taaacttttttggaatcctcaactatcctagtttaagaaattcctgttca
atttttcatactgggtcTGAGtttttagggggtactttttaccctttgta
acgatttgttaagaaaaaatctttccatgtatgatataatttgctttata
ataaaaataaatcgaCCAATTGCCTTGAAActttgccaaaagtttcaaga
tagattggtgatcatcattgacaaaaattttttgcgaaAAACTATTTTTG
GGGGTTTATCTGGGGGAAAATAGAATGAGGCACAAACTTTGTGTTATGAT
AAATCTTAAATGCGATACACCcgaaaaatttcttgtcaactgtatttagt
aTCATTTCGAcgcttcagggggtaaaaatgcccattttattgaattatta
ttattattattttgttgaAAGAATTGGATATTATTTGACTTTTCGAGGAA
GACGCGCATGACGAAGTCGATGAAGAGGTTGAACAGAAATGGACTTTCAG
GACCACCCTGACGTACGCCTGATGTAGTCGGAAATGTCTCTTTTTCAAAT
GTTAGACTTGTGTCTGAGTACAACTTTTCAAGGATGTTGAGGATTTGGGG
ACAACGATTATCAGAGAAACGTAGTTTGATAGAGTCAAATAACCATTTTC
TGGGGATGTGGTCAAAAGCCGCGGTGAGATCCACAAAGAGGAGAAAAAGA
GGTTGCTTCTTGCGGTGAGTGATCTGTTGAACTCGTTTTATGGTATAGAT
ACCATCGGTGGTACCCCTATCTTGGCGAAAACCATTTTGCTCCTCTGAAA
GCTGGGCTTCGTACCAAGGACGAAGGCGACCCAGAATGAGATTGATGACC
AACTTACAAACAGTTGATCCGATGCTAAGTCCACGGTACTTTGTAGGGTC
GTTTTTGGATCCTTTACCTTTCCAAAGAGTACGGAGTCGAGAGTTACCCC
AAGCGTGGGGTACGTCCAGGTTTTGCCAAAGGTTTGAGGTCATGCGATGC
AATACTTCTAACATAATTGGGTGGTTCAGCTTTTTGAGAAACTCAGCATC
AATGTCATTAGATGCTTTATTGGATTTAAGCTTTTTAAGATAAAGTTCGA
TCTCGTTCAGGGTTGGTGGTGATCGTTTATGAGGACAGTCTGCGATATGC
GTTTTTCGACAAATTCTGGGATATTCGAATCAAGTTCTTCAGGGGTCCTT
GTCGAGGAAGGATCAGGAGGGTTGAAGTGTGATTTAAAATGCTTCATAAG
TTTATCTGTTGGGCATGAGCTAGGTATATGTTTCAGAGTCGTCACTTGCT
GTTTAGCTCgttgaaacaatctttgaagtTCTCTATTAATGGCAAGTTGG
TTAATTTTGTCAGCCTCAGCTTTAAAGTGTTCATTTTTCAGGAAACGTGC
CCTGAAGCGaatcttttttctgattttggcaATGTCCTTAAATTCAGCAT
TTCTAGTAATAAGTGAAGTTTTCTGTTCATAGAGCTCAGCCAATTTTTTA
TCATTGTGCCAGGGCTGAGTAGTAAACGGGTTGTTTGTTTTGGGGACAGT
GCGGTCGGCTGCTACGGTTATCGAGCGAATTAAGTGTTGATTGAGCAACT
CGTTATTATCGTTGTCTACTGGTAATGAATCCAAATTTGTTATAGCAGAG
TTCATGAAGTGATTTTGGATATCTTGGTCATTACGAAATCGATTCatatc
aaactttaaattaGATTTGTTCATTGGTTGTCTCTTTTTAAAGCGAGCTT
TCTTGGTACACGGCGTGCAGAGCGTTGCAATGACAAGGCGATGATCGCTA
TCAAAATCGAAACTACGGTACACTCGGCAGTTTTGGGAATATTGACGTAG
CCAACTATTAACGAGAATAAAATCGTAAACTTTTTGGGTGACACCATCAG
GGGAATACCAAGTAACGCGCCGACAACGTTTGTGATTGTACCAAGTATTG
AGAACGGAAAGACGACACGTGTTAAGAATTGGTGGAAACGTTCACCATTG
TTGTTTACTTCAAGGTCGGGGACAATCACATTTTCGCGAAGCGATGAGTT
TTGCCAGACAGCAGAGGAAGTTGCGTTAAAGTCTCCAAGGCAAATGATAT
TTTGATTATGGTTTGCTGCATTTATCTGTTTTCTCAAAGAATTATAAAAA
CTTGTCTTACTGGCTATCCACTTCAGTCGGAGCATAGCTATTGATAACTT
TAAGGGAGTATCCGTAGAGAACAACATCAAGAACAATGATCCTGGCGTTA
ACGTGGGTGATATCGGTTATTTCAATATTTGGGTCAACTTTAACAACGAC
AGCGACACCGTGTGTCCGTTTGAGCGCATGGCCACTCCAATAAACTTCAT
ATTTCGTATTTCTGTTTTCAATAGTAATAGGTATGATAGCTGAGTCTTTT
CCATGTCTTCGTGACTCTTGGATCGCGCAAATACTGAGCCTGATCAACCG
TTGATTTAGGGGCGTGTCCGGTCAGCACCTCGTCCCGAGACAGATCAAAA
AGTCAATCCATCACCattgtttgttttgttctttttattGAACTCCTAGA
AGAATTATCCTAGTTGAATTTTAGGCGAGGCTTTGACATAGAGTCTCCCG
GAATAATAAGTCTGCCGATAACCACCCTGATGTAGTTGACAAATACCTTC
AGGATGAACTGGAGAAGGACAGAATTATAGGGCCCTTTGATGCACCCCTT
TTGGGGGTACCTTTCGgcttggaaaaattttcccaaaaacttTGAGAGTT
AGCCAGTATCATTACCTgcaaaaaaactcaaactatCTACTTTGTCTATC
CTTGGCTCCTGTTTCTGACTCTATCTAAATTCCATAAGGTAGAAGTACAA
GTTAAAATTAACTTAACTTTTAGGCTTGGAAGTGATTCCGTGCTTGATGA
CATACAAATGTCCGTATTGGTTGTGTCTAACGGATATGGGCATTTCACTT
TAATTTACATTGATTTTTgttgtaatgtttttaatcaaaagaaaaacttc
ttggaagtgtgtttcagttaaattacaatcaTTAAAGTCATTATTATATC
GGTAACTTCATGTCGTATTatcaagccaatcaaaatagATTACAACTTNA
Ttgactaggatagttgaggattccaaaaatatatagtttatcctgtagaa
tcttgggttaagcaaaagtgctttTTTAAGGAGATTTGGCTCCTGGACTA
TGAAGGCTGCTTGCCATTTAAATCCAAGATAATAGACGAAATTGATTTTG
TCGCTTTGAAAACGTACTAAACTTCAAATAACAGATAGAAAAAGTGTCTA
CTTTGAATACTTCCCCCCCCCGGGAGGGGGGGGAGGCACtaatatgatct
ggcctacgtcatgtgccgcgcttaagggtgggatTTTtcagtgcactgta
agggtgtgtttctgtgagattgcactgcaagggtcgaattttaaaacaaa
ttcaaaataattgataaaaagaaaggtttatacttctcgtttgtttgaaa
cagaaaatttcccaagcttctttttttcacgcagatttacagctgaaaaa
tatagtgcactataagggttgggtaaatcatgagaaaatgcactgaaagg
gtaccttttcagccatattgaattgcactgtaaaggtacgatttcggggt
tgtggatggtgaGATTTGTtcgtatttttgaaatttgtcgttTGTTTTTT
ATGTTGCGAAGTAGGCACTTTCTCCCCGTCATAAATACATTTCTCTATGC
AATgaagaaagtaaaaaaagtcTTGCTAGGACCATCTGCGAAACCTTACA
TATCTTTTCATACACAAACTCAAATACTGGATCAGAGATGCTTAGATCGA
GAGATATGGCTAAAAAATGCATAAAGGATGTTTATAAtaagcaaaatatt
ttgggaaatacgtcaaaaagcaaaaaacaGCNATTATATCatacatggaa
agatattttccttaacaaatccttacataCAAatggtaaaaagtaccccc
taagtTTGAGCCCAGTATGAAAAGTATGGGGTTGTGGATGGTGAGATTTG
TtcgtatttttgaaatttgtcgttTGTTTTTTATGTTGCGAAGTAGGCAC
TTTCTCCCCGTCATAAATACATTTCTCTATGCAATgaagaaagtaaaaaa
agtcTTGCTAGGACCATCTGCGAAACCTTACATATCTTTCATACACAAAC
CCAAATACTGGATCAGAGATGCTTACTTAGATCGAGAGATATGGCTAAAA
AATGCATAAAGGATGTTTATAAtaagcaaaatattttgggaaatacgtca
aaaagcaaaaaacagccaaaatcgAAAAGTGGAGGACCCGAGGGGGGGGG
CTACTACCTTTGCCATCGGACGGGGGTGCTCTGCTGAGGTTCAAAAAATG
GGCCCTACGAGGAACtcgttttttaaaaagttttatcgaaatttgcgaaa
aaagtgaccctgaatgggaatgaaattccaaaatgttctaaattttttaa
tgaaaaagtacgtaccagaggggggtatagccatttgcgtacatgggggg
ggagggggtactcgattttcgacattttagtgcgtacgtactatgtggac
ggccccttggGACTCGTGGTTGAAAAAGGTACCCCTcctttttttcaggt
tttgttGGTTTGGGACATTGCAGTGTTCAACCATTTATCCCGAAATTTAT
GATAACCAGTGGCTTCATATCagccatatttttctttttatttcttgtgG
CATGGGCAACTGGTTCCAAAGATGGGTCTTCATGTGAGTATGCTGCAGTA
TTTGGCTTCGTAGTTCTTTTGGGAATCCAAATAGCAGGAGCTCTTTATAT
ATTTGATATTGATTCTTCGAAAGTTATTGATGGAGTAAATTGCGACAAAG
ATTTGTACTGGTTCGCTTTTGCATTACTTATAATATTTTTGGCATCATTT
TTTGTGCTCGGCGTTATTTTTATTGCGTACATCAATAAAAACTAACACGA
GTCAAATGcaaacataaaattctcaagtCGATCGCCAATTTCATTCTTGT
ACAGTCGATTCAACACTTTGCTCTTGAAAAAGTAATCAAGCTTGTAAATG
AATGTTTTATATATTGTTCTTTATTTGGAATTAAAAGATAAACCCCTCAA
AATAATCTCCAGGGTATTACGTatttctt Coding sequence (CDS) from alignment at scaffold_266:676835..682163+ >TCONS_00055964 ID=TCONS_00055964|Name=TCONS_00055964|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_266:676835..682163+ (Clytia hemisphaerica)
TATCTGATCCTTATTGCCATTCCATTAGCAATGATCATTTATGgttttgt
tGGTTTGGGACATTGCAGTGTTCAACCATTTATCCCGAAATTTATGATAA
CCAGTGGCTTCATATCagccatatttttctttttatttcttgtgGCATGG
GCAACTGGTTCCAAAGATGGGTCTTCATGTGAGTATGCTGCAGTATTTGG
CTTCGTAGTTCTTTTGGGAATCCAAATAGCAGGAGCTCTTTATATATTTG
ATATTGATTCTTCGAAAGTTATTGATGGAGTAAATTGCGACAAAGATTTG
TACTGGTTCGCTTTTGCATTACTTATAATATTTTTGGCATCATTTTTTGT
GCTCGGCGTTATTTTTATTGCGTACATCAATAAAAACTAATATCTGATCC
TTATTGCCATTCCATTAGCAATGATCATTTATGgttttgttGGTTTGGGA
CATTGCAGTGTTCAACCATTTATCCCGAAATTTATGATAACCAGTGGCTT
CATATCagccatatttttctttttatttcttgtgGCATGGGCAACTGGTT
CCAAAGATGGGTCTTCATGTGAGTATGCTGCAGTATTTGGCTTCGTAGTT
CTTTTGGGAATCCAAATAGCAGGAGCTCTTTATATATTTGATATTGATTC
TTCGAAAGTTATTGATGGAGTAAATTGCGACAAAGATTTGTACTGGTTCG
CTTTTGCATTACTTATAATATTTTTGGCATCATTTTTTGTGCTCGGCGTT
ATTTTTATTGCGTACATCAATAAAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055964-exon-scaffold_266-1491911889:676835..676878 | TCONS_00055964-exon-scaffold_266-1491911889:676835..676878 | Clytia hemisphaerica | exon |
| TCONS_00055964-exon-scaffold_266-1510915933:676835..676878 | TCONS_00055964-exon-scaffold_266-1510915933:676835..676878 | Clytia hemisphaerica | exon |
| TCONS_00055964-exon-scaffold_266-1575043694:676835..676878 | TCONS_00055964-exon-scaffold_266-1575043694:676835..676878 | Clytia hemisphaerica | exon |
| TCONS_00055964-exon-scaffold_266-1491911889:681633..682163 | TCONS_00055964-exon-scaffold_266-1491911889:681633..682163 | Clytia hemisphaerica | exon |
| TCONS_00055964-exon-scaffold_266-1510915933:681633..682163 | TCONS_00055964-exon-scaffold_266-1510915933:681633..682163 | Clytia hemisphaerica | exon |
| TCONS_00055964-exon-scaffold_266-1575043694:681633..682163 | TCONS_00055964-exon-scaffold_266-1575043694:681633..682163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:676835..682163 + |
Blast
The following BLAST results are available for this feature:
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