TCONS_00055893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055893
Unique NameTCONS_00055893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055893 ID=TCONS_00055893|Name=TCONS_00055893|organism=Clytia hemisphaerica|type=transcript|length=674bp
acagaaattaacattaaaaaggaaaataaaaagaaaaaagaaactgaaaa
aaagttaaagaaaacagaaaaatccAGTCAATAGAAATGTCGTTCGATTT
CAATGGAAGGGTTGCACTTATCACAGGTGCGAGCTCAGGTATCGGTAAAG
GGGCAGCAATCTACTTGGCAAAGAATGGTGCAAAATTAGCAATCACTGGA
AGAAACGAAGAAAATTTGAAGCTTGTGGCGACTCAATGTGAAGATGTTTG
CCCAAATAAAGAAAAGGTATTGACGATCGTTGGTGATTTAAGCAAAGAAG
AAGATACagcaagaacaatagaagaGACTATCAAACACTTTAACCAATTG
GATATCTTGgtaAACAGCGCGGGTATTGTTGTGAATGGGACAGCAGAGTC
AACAAGCCTTCAGGATTACGACATGCAAATGAACATTAACTTGAGGTCGG
TTTTTCACATTACGAAACTAGCAATACCACACTTGATCAAAACTAAAGTT
TCCAGGGGTTTCGACGTATTGCATGTCGAAAGCAGCCTTAGACCAATACA
CAAGGACAACAGCATTGGAGCTTGCATCTCAGCAAGTCAGATGTAACGCA
GTCAATCCTGGTGTCATAAGAACAGAGATTCATAAACGAGGCGGTATGTC
TGAAGAAGATTATGCAAAGGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_265:42253..45692+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055893 ID=TCONS_00055893|Name=TCONS_00055893|organism=Clytia hemisphaerica|type=transcript|length=3440bp|location=Sequence derived from alignment at scaffold_265:42253..45692+ (Clytia hemisphaerica)
acagaaattaacattaaaaaggaaaataaaaagaaaaaagaaactgaaaa
aaagttaaagaaaacagaaaaatccAGTCAATAGAAATGTCGTTCGATTT
CAATGGAAGGGTTGCACTTATCACAGGTAAGAATCAATCGATCAAAATTC
CGTGATGTACTTACCAAATCCTCCTTgtaaaaaattgacgaaaaaagaCA
AAACTAGTTGCTGCACCTTTGATGATAGCCAGCTAGCTACTAACACATCT
ATACAAGTTTCGATATGCTCTTGTTTATTCGATTCATCTTCAGGTGCGAG
CTCAGGTATCGGTAAAGGGGCAGCAATCTACTTGGCAAAGAATGGTGCAA
AATTAGCAATCACTGGAAGAAACGAAGAAAATTTGAAGCTTGTGGCGACT
CAATGTGAAGATGTTTGCCCAAATAAAGAAAAGGTATTGCTCTGACCAtt
tcaataattaaaaaatatatatactttTGACTCTTTGGGCGCAATATATA
CATTTGCCTTTATATGAAATGCCATTCCAAAGCCTTCCCAGGTCCATGCA
ATTTTTGCGCTCATAAAGTTTTAATGGTCTCTCCATGATAAATTTTAGAA
TATTTACTACgttcccccgggggggggggaggcactccaggtaagtgacc
taccggacgtgcggcccttaagggtaggctTTTTGGAGTTTGGAAAgttt
gcactgtaagggttgatttgtgagcaagtgggaaaaagtgcactgtaagg
gggTAAAATTCgggaaaataccaaattttgagataaaatttgagaaattt
aaaaaattttcgccctgaaaagggcaaaaagtttcgaaaaatcGCATTAT
AAGGgacgattttcagccaaaatcaagtgcccccccccccgggtacgTTC
CACACTGGTTGTAAAAACAACCTATTACCACATTAATCTTTTTTACCATT
CGAGGACCTCGGTGAATTTTAGTGCTGAATTTTCATCACATCTCTCATAT
CTCTCCAGGTATTGACGATCGTTGGTGATTTAAGCAAAGAAGAAGATACa
gcaagaacaatagaagaGACTATCAAACACTTTAACCAATTGGATATCTT
GGTAATGTTTTCTACCCTTGACGTTATTTTGTGGAAGTGAACAACGATGA
AGGTAGATTTTAAAAGAGGTGCAGTTATTGACTTTCTGCAAATGTGTGAG
GGGAGAGTCGAGTTATTTTTGTCAAAGCTAGTTGCAAACTgtcaaacttt
cattttcaggtaAACAGCGCGGGTATTGTTGTGAATGGGACAGCAGAGTC
AACAAGCCTTCAGGATTACGACATGCAAATGAACATTAACTTGAGGTATT
TGTAATCTCAACCGCATATAGCAAACGTCACGATTTAATGTAAGCCTGTA
AGTACATGTATAAAAATTAGAGACCCGTAATATCACCATCTCTTCTCTTT
TCAGGTCGGTTTTTCACATTACGAAACTAGCAATACCACACTTGATCAAA
ACTAAAGGTATACTACATAACCATTTCACCTTTTCCGATCTCGTTGGAAT
GTCGGGCTTACCATTCTTTGTTCCTATTATGGGTTATGATATTATTCGCT
GTGATGGTTTCCAAAGATACAccactaatacaataatgaccggttagtga
gggctgttgaaatattgcccgaggtcaagtaacgaccgagcttgcgaggt
tgttgcgttgaccaagggcaatattttcagtacagcccgaaaaaaccggt
cattattgtatttgttaaccgtttccttcagcttcgattgatttttagcg
ctttatccaggaaaaatagcgaaataaagaaatcaaaaattgttttattt
tttgacgtcagaaacaaaaaatgagagaaatgatgtcaacgtattgttca
ttttcctttgaaaaagtgacgtcacaatgaatcttcctaacgacgggcaa
ctctgggcaatgtaggcccgtcgtcatacgaaaagaaccaattgcattgc
gcaaaaagtcgtgtagcccgctttgaaaaagtaaccggttaacaatttTC
CATTTCGAATGTTTGATTGGGCTGTTCTAAttaatatccatacagggggg
ttgacgaactttttcaagccaaaaataATTCTTCAAATGTGTGGATACTC
CCTGGATAATtgcaagattttcaaaaaacgccCTCGGAAAAGTACttctt
cataccttaaagtgaggtaGGATGACTAAGTCATTCTTAACTTTCTTATC
ACTAATAACTTTTTACGccctgagaaaattagaaaagCTTTCTTTCTTGA
CACTCTGGAAATTCTTCTTCAGGTTACCCCCTAGTAAAATACGCCCActc
cctgtatggatataaaattgaATGGCCCATTAGTTGTCATAGGACATAAT
CTATATAACAAAATTTACTTCAATTTCTCGAATCATCAACGATCGCATCG
CGAACAATTTtccaattcaatttcattttgtagGAAACATTGTAAATGTA
TCAAGCGTAACTGGCCTTCGTTCGGTAATTAATACGTTTTTCATCGGCAA
TCAATCACCTGCATATTTTACAATTCTTGTTTAGAATATTGAATAAAGTA
AAATTCACAAATCTTAACTGGTGTAACAAGGTCCTAATTTAAGGGAGCTG
AAGAGAGTGCCAAACACATTAGACGTTCTTTTCTAACATTGGATTCCAAC
tattaaagaaaacaatttgacCTTCGCTAGATTTTGGACTATGTTTGAAG
GTTAGGCTTAGGGGTAGCTCTAATTAAAAGAGATCCTAGATAGGGCCATC
ttgatttaataattttttatcttgactactattctcaacttcagttgagc
tagaatctgtcAGTCTGTCACctcaaaactttagggcaggctggagactt
caaaaatggtcggattcgggcgtggtcacgagtttgagcctcaaaacgag
gctaaaaactttGGTGCTGGCTggtgacttcaaaaatggtccgattctGC
CGACATTTTGCACACttttccttgggtgaatatcgaATATCTGGggttgt
tttcttcattttaagggcgtggtcacaaaGTTCAGCTCAAaacgaagcaa
aaaaatttcttatatcaaaaatttttctgTTGATGTTTACACTTGGACCT
GCGGGTAATTTAAAAGATACTGAatttgagccagtgcggttagcacgttc
gaaaGTATTTTACTGAACTTTTTAAACATCTTGCCTATCCTTATTAATGA
ATTTTTAATGTTAGTTTCCAGGGGTTTCGACGTATTGCATGTCGAAAGCA
GCCTTAGACCAATACACAAGGACAACAGCATTGGAGCTTGCATCTCAGCA
AGTCAGATGTAACGCAGTCAATCCTGGTGTCATAAGAACAGAGATTCATA
AACGAGGCGGTATGTCTGAAGAAGATTATGCAAAGGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035196XLOC_035196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055893-exon-scaffold_265-1491911889:42253..42378TCONS_00055893-exon-scaffold_265-1491911889:42253..42378Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1510915933:42253..42378TCONS_00055893-exon-scaffold_265-1510915933:42253..42378Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1575043694:42253..42378TCONS_00055893-exon-scaffold_265-1575043694:42253..42378Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1491911889:42546..42685TCONS_00055893-exon-scaffold_265-1491911889:42546..42685Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1510915933:42546..42685TCONS_00055893-exon-scaffold_265-1510915933:42546..42685Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1575043694:42546..42685TCONS_00055893-exon-scaffold_265-1575043694:42546..42685Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1491911889:43261..43353TCONS_00055893-exon-scaffold_265-1491911889:43261..43353Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1510915933:43261..43353TCONS_00055893-exon-scaffold_265-1510915933:43261..43353Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1575043694:43261..43353TCONS_00055893-exon-scaffold_265-1575043694:43261..43353Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1491911889:43512..43597TCONS_00055893-exon-scaffold_265-1491911889:43512..43597Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1510915933:43512..43597TCONS_00055893-exon-scaffold_265-1510915933:43512..43597Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1575043694:43512..43597TCONS_00055893-exon-scaffold_265-1575043694:43512..43597Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1491911889:43707..43759TCONS_00055893-exon-scaffold_265-1491911889:43707..43759Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1510915933:43707..43759TCONS_00055893-exon-scaffold_265-1510915933:43707..43759Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1575043694:43707..43759TCONS_00055893-exon-scaffold_265-1575043694:43707..43759Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1491911889:45517..45692TCONS_00055893-exon-scaffold_265-1491911889:45517..45692Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1510915933:45517..45692TCONS_00055893-exon-scaffold_265-1510915933:45517..45692Clytia hemisphaericaexon
TCONS_00055893-exon-scaffold_265-1575043694:45517..45692TCONS_00055893-exon-scaffold_265-1575043694:45517..45692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_265supercontigscaffold_265:42253..45692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.05344	4.96718	3.10636	0	0.897097	0	0.369937	2.01694	0.44943	1.26372	0.699302	0.505314	0.430941	1.08734	0	1.75062	1.30329	1.22355	0	0	0	1.6973e-05	4.18895	6.14752	0.29935	1.13183	2.87024	0	1.26113	2.9775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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