TCONS_00055868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055868
Unique NameTCONS_00055868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length124

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055868 ID=TCONS_00055868|Name=TCONS_00055868|organism=Clytia hemisphaerica|type=transcript|length=124bp
ATCTGCTCAAAAATATATCAACGTAAATACGCCTTTTTGAAGCACCAAGC
TGGCTgTGTTGCAAAAGAATTGGCGGCAGATGATGTTGTTGTTGATGAAA
ATGCAAAACATACCGTGATCAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_264:18417..18877+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055868 ID=TCONS_00055868|Name=TCONS_00055868|organism=Clytia hemisphaerica|type=transcript|length=461bp|location=Sequence derived from alignment at scaffold_264:18417..18877+ (Clytia hemisphaerica)
ATCTGCTCAAAAATATATCAACGTAAATACGCCTTTTTGAAGCACCAAGC
TGGCTGTAAGTAACTATATtattaaattcaactttttcttaTATTACTGT
TAATGAATCTAAAAAGATTGAATATATGAACTCTCTTTCAAATCATTTAT
GGCTGACCTAAAAACTGACCTactaaaaatggacaaaaatggacaaaaac
agGCCTAAATTCTCCATTTTTGCTGACCTGCTTCCGATAGATTCACAAGG
CTGCCTCTAATGTCTAAAGGAAGATACAGTTTTTCAAAGAATTAGAAAAT
TTACAACGAggcttttcaaaataaatgttgctttttttagctcaaaattt
gtttttacgACATTTCACATAGtcaataatttatttattcaggTGTTGCA
AAAGAATTGGCGGCAGATGATGTTGTTGTTGATGAAAATGCAAAACATAC
CGTGATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035182XLOC_035182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055868-exon-scaffold_264-1491911889:18417..18471TCONS_00055868-exon-scaffold_264-1491911889:18417..18471Clytia hemisphaericaexon
TCONS_00055868-exon-scaffold_264-1510915933:18417..18471TCONS_00055868-exon-scaffold_264-1510915933:18417..18471Clytia hemisphaericaexon
TCONS_00055868-exon-scaffold_264-1575043694:18417..18471TCONS_00055868-exon-scaffold_264-1575043694:18417..18471Clytia hemisphaericaexon
TCONS_00055868-exon-scaffold_264-1491911889:18809..18877TCONS_00055868-exon-scaffold_264-1491911889:18809..18877Clytia hemisphaericaexon
TCONS_00055868-exon-scaffold_264-1510915933:18809..18877TCONS_00055868-exon-scaffold_264-1510915933:18809..18877Clytia hemisphaericaexon
TCONS_00055868-exon-scaffold_264-1575043694:18809..18877TCONS_00055868-exon-scaffold_264-1575043694:18809..18877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_264supercontigscaffold_264:18417..18877 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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