TCONS_00055865 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055865
Unique NameTCONS_00055865
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055865 ID=TCONS_00055865|Name=TCONS_00055865|organism=Clytia hemisphaerica|type=transcript|length=501bp
AAGTAATTGTGCATTGCTAAGCAAGCACAAGTGTATCTCTCAACATTTTT
AATTGAACCACGAATTGGACGTAACAAAATTCTCCAGTGAGCTGCCAAAA
TTCCAAATGCATTTTCGATTGTTCTGCGAGCTCGAGAATGTCTGTAATTT
TAGATTCTCTCATTCTCTGGAAAAGATCTCATTAGCCAAGGCTTTAGAGG
GAAAATCTCATCTCCAACAAGAAAATACGGTAATGGGTCAAAGTTACATT
CACTTACTTTTTCATCTTTCGGATATTCGAAATCCTGTTCATCAAATCTC
ATTCCCATTTCAGAATTAGCTAACACCCCACTGTCATTATTGCTTCCGTA
TGAGCCAACGTCAAACAAGGTAAAACAATAGTTAGCTTCACATACAGCCA
ATAGTACTATGCTGTAAAAGCCTTTGTAGTTATAGTAAAGACTACCAGAC
TTTTTCGGACATTCGATTCGGATGTGTTTACCATCAATCGCACCTATAAC
G
Run BLAST on NCBI

protein sequence of TCONS_00055865-protein

>TCONS_00055865-protein ID=TCONS_00055865-protein|Name=TCONS_00055865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
VIGAIDGKHIRIECPKKSGSLYYNYKGFYSIVLLAVCEANYCFTLFDVGS
YGSNNDSGVLANSEMGMRFDEQDFEYPKDEKVSECNFDPLPYFLVGDEIF
PLKPWLMRSFPENERI
Run BLAST on NCBI

transcript from alignment at scaffold_263:212208..212708

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055865 ID=TCONS_00055865|Name=TCONS_00055865|organism=Clytia hemisphaerica|type=transcript|length=501bp|location=Sequence derived from alignment at scaffold_263:212208..212708 (Clytia hemisphaerica)
CGTTATAGGTGCGATTGATGGTAAACACATCCGAATCGAATGTCCGAAAA
AGTCTGGTAGTCTTTACTATAACTACAAAGGCTTTTACAGCATAGTACTA
TTGGCTGTATGTGAAGCTAACTATTGTTTTACCTTGTTTGACGTTGGCTC
ATACGGAAGCAATAATGACAGTGGGGTGTTAGCTAATTCTGAAATGGGAA
TGAGATTTGATGAACAGGATTTCGAATATCCGAAAGATGAAAAAGTAAGT
GAATGTAACTTTGACCCATTACCGTATTTTCTTGTTGGAGATGAGATTTT
CCCTCTAAAGCCTTGGCTAATGAGATCTTTTCCAGAGAATGAGAGAATCT
AAAATTACAGACATTCTCGAGCTCGCAGAACAATCGAAAATGCATTTGGA
ATTTTGGCAGCTCACTGGAGAATTTTGTTACGTCCAATTCGTGGTTCAAT
TAAAAATGTTGAGAGATACACTTGTGCTTGCTTAGCAATGCACAATTACT
T

Coding sequence (CDS) from alignment at scaffold_263:212208..212708

>TCONS_00055865 ID=TCONS_00055865|Name=TCONS_00055865|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_263:212208..212708 (Clytia hemisphaerica)
GTTATAGGTGCGATTGATGGTAAACACATCCGAATCGAATGTCCGAAAAA
GTCTGGTAGTCTTTACTATAACTACAAAGGCTTTTACAGCATAGTACTAT
TGGCTGTATGTGAAGCTAACTATTGTTTTACCTTGTTTGACGTTGGCTCA
TACGGAAGCAATAATGACAGTGGGGTGTTAGCTAATTCTGAAATGGGAAT
GAGATTTGATGAACAGGATTTCGAATATCCGAAAGATGAAAAAGTAAGTG
AATGTAACTTTGACCCATTACCGTATTTTCTTGTTGGAGATGAGATTTTC
CCTCTAAAGCCTTGGCTAATGAGATCTTTTCCAGAGAATGAGAGAATCTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035179XLOC_035179Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055865-proteinTCONS_00055865-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055865-exon-scaffold_263-1491911889:212208..212708TCONS_00055865-exon-scaffold_263-1491911889:212208..212708Clytia hemisphaericaexon
TCONS_00055865-exon-scaffold_263-1510915933:212208..212708TCONS_00055865-exon-scaffold_263-1510915933:212208..212708Clytia hemisphaericaexon
TCONS_00055865-exon-scaffold_263-1575043694:212208..212708TCONS_00055865-exon-scaffold_263-1575043694:212208..212708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_263supercontigscaffold_263:212208..212708 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.242998	0.118481	0.137568	0	2.94927	1.16528	0.937238	1.60862	1.331	2.02913	0.49238	0.809177	0.888858	1.67834	0.758903	0.666343	0.82088	1.02835	0.904094	1.08122	0.352417	0.859483	0.278617	0.506607	0.521793	0.931375	0.333199	0.177799	0.134855	0.274791
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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