TCONS_00055853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055853
Unique NameTCONS_00055853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length661

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055853 ID=TCONS_00055853|Name=TCONS_00055853|organism=Clytia hemisphaerica|type=transcript|length=661bp
AAATATTTCAGTAAATTTATACCCTACACCATGACCGATGACATAGTCCA
AGACTCGTTGTTTCAGTATTTCATTAATCGACCAGGAGTTATTTTCACCA
TATTAAGGACCGACTTCACACGATCGAGTTTTAGCCTATCAAGCAGTAAA
AGTGGCTTGGTGAAAGTCTCAATTTTGAAATGCACTTTTGATCAATCTTA
TCGTGATAGAATTAGTAGCCAAGTTTCTATGGATATAAATGACTTTTCAT
TACATCACGAACTTTTAATTAAAGATTCgttatttaaaaattcaaatagt
GGCTCAATTGTTTCGGAAGGGTACCAGGTTACAATAATAAATTCAGCATT
TCTTGACAATTATTTACCGTATGATCTACCTACTACGAGTTTTCATACGT
GTGCTGGAATAAAGATCAAATCCAAAAATATTACAATCAATAATTGCACT
TTTTTCAACAATTCTACTCCTTTTTCAAGTATACCAACTTCAGTGTACTT
AATATTTTATCTTTATCAATATCCATTTTTAAACCTCACCAAAATACAAA
TGTTTAATGGTATAATGGGGATAGAGAAGTCTAGCGTACCATTTtttgtt
gaagaaaatttcaaggaaaCAACACATTTTATTGATTCAAATTTCTCATG
CTATGAGCCAA
Run BLAST on NCBI

protein sequence of TCONS_00055853-protein

>TCONS_00055853-protein ID=TCONS_00055853-protein|Name=TCONS_00055853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
KYFSKFIPYTMTDDIVQDSLFQYFINRPGVIFTILRTDFTRSSFSLSSSK
SGLVKVSILKCTFDQSYRDRISSQVSMDINDFSLHHELLIKDSLFKNSNS
GSIVSEGYQVTIINSAFLDNYLPYDLPTTSFHTCAGIKIKSKNITINNCT
FFNNSTPFSSIPTSVYLIFYLYQYPFLNLTKIQMFNGIMGIEKSSVPFFV
EENFKETTHFIDSNFSCYEP
Run BLAST on NCBI

transcript from alignment at scaffold_263:1320..1980

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055853 ID=TCONS_00055853|Name=TCONS_00055853|organism=Clytia hemisphaerica|type=transcript|length=661bp|location=Sequence derived from alignment at scaffold_263:1320..1980 (Clytia hemisphaerica)
TTGGCTCATAGCATGAGAAATTTGAATCAATAAAATGTGTTGtttccttg
aaattttcttcaacaaaAAATGGTACGCTAGACTTCTCTATCCCCATTAT
ACCATTAAACATTTGTATTTTGGTGAGGTTTAAAAATGGATATTGATAAA
GATAAAATATTAAGTACACTGAAGTTGGTATACTTGAAAAAGGAGTAGAA
TTGTTGAAAAAAGTGCAATTATTGATTGTAATATTTTTGGATTTGATCTT
TATTCCAGCACACGTATGAAAACTCGTAGTAGGTAGATCATACGGTAAAT
AATTGTCAAGAAATGCTGAATTTATTATTGTAACCTGGTACCCTTCCGAA
ACAATTGAGCCactatttgaatttttaaataacGAATCTTTAATTAAAAG
TTCGTGATGTAATGAAAAGTCATTTATATCCATAGAAACTTGGCTACTAA
TTCTATCACGATAAGATTGATCAAAAGTGCATTTCAAAATTGAGACTTTC
ACCAAGCCACTTTTACTGCTTGATAGGCTAAAACTCGATCGTGTGAAGTC
GGTCCTTAATATGGTGAAAATAACTCCTGGTCGATTAATGAAATACTGAA
ACAACGAGTCTTGGACTATGTCATCGGTCATGGTGTAGGGTATAAATTTA
CTGAAATATTT

Coding sequence (CDS) from alignment at scaffold_263:1320..1980

>TCONS_00055853 ID=TCONS_00055853|Name=TCONS_00055853|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_263:1320..1980 (Clytia hemisphaerica)
TGGCTCATAGCATGAGAAATTTGAATCAATAAAATGTGTTGtttccttga
aattttcttcaacaaaAAATGGTACGCTAGACTTCTCTATCCCCATTATA
CCATTAAACATTTGTATTTTGGTGAGGTTTAAAAATGGATATTGATAAAG
ATAAAATATTAAGTACACTGAAGTTGGTATACTTGAAAAAGGAGTAGAAT
TGTTGAAAAAAGTGCAATTATTGATTGTAATATTTTTGGATTTGATCTTT
ATTCCAGCACACGTATGAAAACTCGTAGTAGGTAGATCATACGGTAAATA
ATTGTCAAGAAATGCTGAATTTATTATTGTAACCTGGTACCCTTCCGAAA
CAATTGAGCCactatttgaatttttaaataacGAATCTTTAATTAAAAGT
TCGTGATGTAATGAAAAGTCATTTATATCCATAGAAACTTGGCTACTAAT
TCTATCACGATAAGATTGATCAAAAGTGCATTTCAAAATTGAGACTTTCA
CCAAGCCACTTTTACTGCTTGATAGGCTAAAACTCGATCGTGTGAAGTCG
GTCCTTAATATGGTGAAAATAACTCCTGGTCGATTAATGAAATACTGAAA
CAACGAGTCTTGGACTATGTCATCGGTCATGGTGTAGGGTATAAATTTAC
TGAAATATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035167XLOC_035167Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055853-exon-scaffold_263-1491911889:1320..1980TCONS_00055853-exon-scaffold_263-1491911889:1320..1980Clytia hemisphaericaexon
TCONS_00055853-exon-scaffold_263-1510915933:1320..1980TCONS_00055853-exon-scaffold_263-1510915933:1320..1980Clytia hemisphaericaexon
TCONS_00055853-exon-scaffold_263-1575043694:1320..1980TCONS_00055853-exon-scaffold_263-1575043694:1320..1980Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055853-proteinTCONS_00055853-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_263supercontigscaffold_263:1320..1980 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125797	0.265077	0.398256	0.0869465	0.599098	0.167287	0.75555	0.505761	0.35379	0.485715	0	0.276002	0.503815	0.278453	0.139427	0.394895	0.117845	0.14792	0.178401	0.282389	0.620216	0.222096	1.00786	0.45341	0.771965	0.803375	0.328889	0.344585	0.723238	1.06266
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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