TCONS_00055800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055800
Unique NameTCONS_00055800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055800 ID=TCONS_00055800|Name=TCONS_00055800|organism=Clytia hemisphaerica|type=transcript|length=571bp
ATCGATTTTGTCGTACTTTTTCACTTTGTCAACATTTTCATGGATGATGG
TTGAAGGAATCAATATCATCAtcattgttgtttttgttttcaaaggaAAT
CGAAATTACCACAAACAATTTCTAGCCATCGGCTATGGTTTACCCTTTCT
ATTGACATCGATCTTCGGAGGAGTTTTCAACCAATCTTTTGCCGATGCTA
TTGAGTGTGTCGTTTTACAAAGAAACTATTTCTGGGTGTTGAGAGGACCA
ATATGTTTTTATCTGCTGGTTAATGGTATCTtatattttgatgaaacttC
GTCAAGTTGCTAAAGAACGTAAAAACATGAATGTCAACACGAAGTCAAGc
tcAAGTACAAAGACGTTTTTGGTGTTGGTGCCACTACTTGGGATACCATT
TATATTGGCACCCTTTGTTGAATACAGCATTTATATCGCTTACACTTTCG
TCATCATGAATGGACTCACGGTatgtggaaattttttttcatgattttgt
ttACTGACTGCTGCGactataatttttcaaattgctTGATAATTTTTACT
AAGAAAGACACATTATTTAGA
Run BLAST on NCBI

protein sequence of TCONS_00055800-protein

>TCONS_00055800-protein ID=TCONS_00055800-protein|Name=TCONS_00055800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
SILSYFFTLSTFSWMMVEGINIIIIVVFVFKGNRNYHKQFLAIGYGLPFL
LTSIFGGVFNQSFADAIECVVLQRNYFWVLRGPICFYLLVNGILYFDETS
SSC
Run BLAST on NCBI

transcript from alignment at scaffold_26:153832..156766+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055800 ID=TCONS_00055800|Name=TCONS_00055800|organism=Clytia hemisphaerica|type=transcript|length=2935bp|location=Sequence derived from alignment at scaffold_26:153832..156766+ (Clytia hemisphaerica)
ATCGATTTTGTCGTACTTTTTCACTTTGTCAACATTTTCATGGATGATGG
TTGAAGGAATCAATATCATCAtcattgttgtttttgttttcaaaggaAAT
CGAAATTACCACAAACAATTTCTAGCCATCGGCTATGGTAGGTATAGCCT
Gaatatcaaaactaaaaatttcagaaaatttaaattttaactcaacaaac
aaatttttgaaatcacaGCTTAGTCTTAgtcctagagaatgaaagtatGA
ATCCTATGTTTCCAAAACACTCCATAACCACATAGCGCAGTCAAACCCAA
AACCCACCAACCAATATCCAAAAAATTACAACAGTCCATAAGAAAGTTTT
CATGAACCATGTTTCTATGGAAAATAAATTCCCctgatttcttctttttt
tgttttcatgtgattaggaaattatattttcattaGTAAGTAGAGGGTCC
AAGGTTACCCTTTGTTTTGTTACATAATTTAGCCGCGTCATAGAGGCATC
CTTACGGGTTTAACGGGGTTTGTGCAAGTAAGCGAACTGCATTTTGATTT
AGAAGTCAAATTACTTTAGGAAGACCAGGCGGTAAACCAGAAACATGAAA
TAACTGTGAAAACTAGACAGTGAAATAATTTACCGTTTGGATATCAAGGC
TATGGTATTTAGTGTAACTGAACtgagacttttttgtttctttttgtgAG
AAATGCATTATGCATTGTTGCTGGGATCAATAATTCCAATGATAAAACAT
GCTCTATTACTTTTCTCTGAGATCCTCTACGCAAgggaaaaaagaataaa
aaaaccGTGACTTTTGAAATGTTTCAATAGGTTACactatcaaaaactag
actgtaaAATAAGTTAGGTAATTGTAAAGCTATGGTATGCAGTTTAAAAG
AACTGAGACTTGTTTCGATaggttacactttttctcacaTTGAAGAAAAG
CAAGGAAAGTCATGGTGAATTAGTTGTTTAATagtttttatgtttcatct
tttttttcttaGGTTTACCCTTTCTATTGACATCGATCTTCGGAGGAGTT
TTCAACCAATCTTTTGCCGATGCTATTGAGTAAGAAATTTTTATatcaaa
gaatatttttttcaatacgCACAAATTAAgctcattttttttcaatacac
TTTAAAGTATAGAACATATTTGCGAAGATCTTAATAAAAAATCTGCCTCA
AAACTTCAAAACTACTAAGTACTACATTTTAAAACAGACTTGGTTGGAAT
GATCATTTCGAGTGGATGAATTTAAACTCTCACTTGAAAGTCAGTAAAct
tgaaattgaataaaaaataagtGAGAATCTTCTATACGCGAATTCAAGTA
GGTAATAGAATAGGTAGTAGGTAATAGGATGCACcaaatttttctgattc
ttGATGTACATCTTAGCTTCAgttattttattttgtgactTCTAGGTGTG
TCGTTTTACAAAGAAACTATTTCTGGGTGTTGAGAGGACCAATATGTTTT
TATCTGCTGGTGAGTTCACTGCATGCAAAAGTACACGTTTTCTCTCAATA
CTGGTTTCTATAGAAGAATCTACGTCTATACCACTGACCAAACCTCGTTC
CCTGcatattatcagcttttttatgcttactgatatcaatagataatatt
ctctggtgTCAATCAcctcagtaacgtaaataaagcctgggattcACTGA
GACTGACCTTTATACTATGGATAAAGCTTCTCGATTCCAgtcaagaaaaa
aatctttgatttcGAAACAGAGGTGTATCACCACTCAATGTTGGTTTTTA
AACGGagaatttcattgatttataaCTGACCCACATTGATCAAAAATGAC
gtatatagcttggtccagggtatataaaggtcagttgTCTATACCCATTa
attatttccatatttttcatgaaaggAGAGTTCTGCTTTCTAGTAAGCGG
CTTGTTTCCTTTAGAGCAAATATAGCACAATATGATATCTTATCTTATTG
TTTTTGTGACCTTTTTTCGTAtgcattgtttttataaatgtACTTTTGAA
TTTCTTTAGGTTAATGGTATCTtatattttgatgaaacttCGTCAAGTTG
CTAAAGAACGTAAAAACATGAATGTCAACACGAAGTCAAGGTAGCCAGTG
TTGCGATTTGTGTCCTGGTGGTGGTGGCCCCCAGCTAAATCAATATGGCG
CCAGAAACAAAAATCCCGTAATAATTTTGCAAAACCCAGCTTAGGAAGCG
CTCATTGAACCGTGAGAAAGCACTCATTTATTACGAAAATGGCACCCTTT
CCCTTTCTTGAATATTAATGTTTTTATGACATCATGTTCTTCTCTTTAAC
TGGGTGGACCACATTTatcttaaaatgctcttaagtTAACTGAACTTAGA
GAGTTAGAGGTGGCGCCAAATATTTGcttgggattgatattcccgtGTTT
TTATGACTgggaatttcattgttttcatggaaaaaaaCAGCGCAAAGTTT
TACAGTGAggatttgttgattttattattttcagtgaattttcagtttga
agggttcccactgggtctgtgagaaggtggTTTTGATATCTTGATATCTG
GTTCGAAGCCTCGCTTTTCATGTGTGTTATCTTATAGAGTCTCCTatata
aaaagaatttttatttggAGGATTACTAACGCATGAATAGAcgattgttt
ttaaaatttttagctcAAGTACAAAGACGTTTTTGGTGTTGGTGCCACTA
CTTGGGATACCATTTATATTGGCACCCTTTGTTGAATACAGCATTTATAT
CGCTTACACTTTCGTCATCATGAATGGACTCACGGTatgtggaaattttt
tttcatgattttgtttACTGACTGCTGCGactataatttttcaaattgct
TGATAATTTTTACTAAGAAAGACACATTATTTAGA

Coding sequence (CDS) from alignment at scaffold_26:153832..156766+

>TCONS_00055800 ID=TCONS_00055800|Name=TCONS_00055800|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_26:153832..156766+ (Clytia hemisphaerica)
TCGATTTTGTCGTACTTTTTCACTTTGTCAACATTTTCATGGATGATGGT
TGAAGGAATCAATATCATCAtcattgttgtttttgttttcaaaggaAATC
GAAATTACCACAAACAATTTCTAGCCATCGGCTATGGTTTACCCTTTCTA
TTGACATCGATCTTCGGAGGAGTTTTCAACCAATCTTTTGCCGATGCTAT
TGAGTGTGTCGTTTTACAAAGAAACTATTTCTGGGTGTTGAGAGGACCAA
TATGTTTTTATCTGCTGGTTAATGGTATCTtatattttgatgaaacttCG
TCAAGTTGCTAATCGATTTTGTCGTACTTTTTCACTTTGTCAACATTTTC
ATGGATGATGGTTGAAGGAATCAATATCATCAtcattgttgtttttgttt
tcaaaggaAATCGAAATTACCACAAACAATTTCTAGCCATCGGCTATGGT
TTACCCTTTCTATTGACATCGATCTTCGGAGGAGTTTTCAACCAATCTTT
TGCCGATGCTATTGAGTGTGTCGTTTTACAAAGAAACTATTTCTGGGTGT
TGAGAGGACCAATATGTTTTTATCTGCTGGTTAATGGTATCTtatatttt
gatgaaacttCGTCAAGTTGCTAATCGATTTTGTCGTACTTTTTCACTTT
GTCAACATTTTCATGGATGATGGTTGAAGGAATCAATATCATCAtcattg
ttgtttttgttttcaaaggaAATCGAAATTACCACAAACAATTTCTAGCC
ATCGGCTATGGTTTACCCTTTCTATTGACATCGATCTTCGGAGGAGTTTT
CAACCAATCTTTTGCCGATGCTATTGAGTGTGTCGTTTTACAAAGAAACT
ATTTCTGGGTGTTGAGAGGACCAATATGTTTTTATCTGCTGGTTAATGGT
ATCTtatattttgatgaaacttCGTCAAGTTGCTAATCGATTTTGTCGTA
CTTTTTCACTTTGTCAACATTTTCATGGATGATGGTTGAAGGAATCAATA
TCATCAtcattgttgtttttgttttcaaaggaAATCGAAATTACCACAAA
CAATTTCTAGCCATCGGCTATGGTTTACCCTTTCTATTGACATCGATCTT
CGGAGGAGTTTTCAACCAATCTTTTGCCGATGCTATTGAGTGTGTCGTTT
TACAAAGAAACTATTTCTGGGTGTTGAGAGGACCAATATGTTTTTATCTG
CTGGTTAATGGTATCTtatattttgatgaaacttCGTCAAGTTGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035126XLOC_035126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055800-exon-scaffold_26-1491911889:153832..153968TCONS_00055800-exon-scaffold_26-1491911889:153832..153968Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1510915933:153832..153968TCONS_00055800-exon-scaffold_26-1510915933:153832..153968Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1575043694:153832..153968TCONS_00055800-exon-scaffold_26-1575043694:153832..153968Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1491911889:154844..154910TCONS_00055800-exon-scaffold_26-1491911889:154844..154910Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1510915933:154844..154910TCONS_00055800-exon-scaffold_26-1510915933:154844..154910Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1575043694:154844..154910TCONS_00055800-exon-scaffold_26-1575043694:154844..154910Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1491911889:155277..155340TCONS_00055800-exon-scaffold_26-1491911889:155277..155340Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1510915933:155277..155340TCONS_00055800-exon-scaffold_26-1510915933:155277..155340Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1575043694:155277..155340TCONS_00055800-exon-scaffold_26-1575043694:155277..155340Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1491911889:155891..155971TCONS_00055800-exon-scaffold_26-1491911889:155891..155971Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1510915933:155891..155971TCONS_00055800-exon-scaffold_26-1510915933:155891..155971Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1575043694:155891..155971TCONS_00055800-exon-scaffold_26-1575043694:155891..155971Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1491911889:156545..156766TCONS_00055800-exon-scaffold_26-1491911889:156545..156766Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1510915933:156545..156766TCONS_00055800-exon-scaffold_26-1510915933:156545..156766Clytia hemisphaericaexon
TCONS_00055800-exon-scaffold_26-1575043694:156545..156766TCONS_00055800-exon-scaffold_26-1575043694:156545..156766Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055800-proteinTCONS_00055800-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:153832..156766 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.38835	4.25783	2.06281	1.48301	4.34417	3.63245	8.00385	11.2982	13.5089	7.96804	10.5019	11.9077	11.4437	11.8069	0	0	0.757162	0.378004	0.315445	0	1.18617	0	2.14408	0.86893	6.31788	19.7225	1.20118	1.20412	2.45238	1.15145
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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