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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055794 ID=TCONS_00055794|Name=TCONS_00055794|organism=Clytia hemisphaerica|type=transcript|length=1301bp
CAAGTTGTCTTTAAATTCTTCTAACAAAAAGGTTAATACTACTTAAAAGA
TATCATTCAAAAATTCTTCGTATATCCAGCAAGGTCATGTAAGATCAATA
CAccaaaaaaatacacttttcgaaaagtatTTTCACTAGTATAATGATAT
ctttaattaaaattaaatttctttaaaaattcaaCAGAATTAACTTATAC
AAAATTACAGTAGAAAAATTAAATcataaattagaaaaatatgtaTATTC
AGAgacaaattacaaaaatagggAGTAAAGGGAGTAATAATAATAGTATA
CAAGcagcaaaaacataaaataacaGTCGCAACTTACTAAATAATTAAGG
GATCATGATTGAGATTTCATCATTCTTAATAAAGCATTTCGTTTTAACTT
GTGGAGCCAAAAACATTATTTCTCTGTTCATCAACTTGACTTTGCCACAA
AGTCATTCTTCTTTCAATTTGACCAATGGTTGAATTAAATCTCTTTCTGA
CCACCGGTTCTTTCAGCTGTTCTTGTATGGCGTCTGAGGTGACGCTCAAC
TCTGGTTTCTTACACCTCTTTTGAATCATACAAATGAACATGTAGACATA
CAATGTTGCAATGGACAGTAAAACAATAATAATGATAGCTTTAATCAACA
CAGTATTCCTGGTTTCAAATTTACACTCACATCTCAAACAGAATGTCTCT
TCTCGACCAACTATATTACTGCAATGGCATTCATCTGGTGAAGTGAGATT
ATTGACAACGATGATGTTTGATTTGTTAGAATGTGTTTCTTTCGGACAAA
TACATTTACATCTAACATCACCAGCCTCACAAAACCATAACAAGAGAGCA
AACAGAATCAAATATTTCAGCATTTTTCTTCAGAATATTACACATTTAGA
TTCCTATTTATGTCTATTGTTTTAAATTCCCTAAAAGAGTAACAAAAAGT
TATTGTTTTATtcattaaagaaaaaaaacagaatattGTAAAATATATAA
TCAGGACATGTTTGTTTACGTTAAAATCAATgaaggaaaaatctttttga
atagGTTAATACTTATATTTAGATTAATATTGGGTGTGTCTGAAATAACT
TACCCTCCTTGATCTGATATTGCTGACAGtagtaaaaagatttttcaaaa
attgtttcagAATCAATCAGAACAAAGTCTAActtaaaatatgtccaaaa
aaACTAAACGTCTATTTTTATTAAAGACGTTaaaaaggctaaaaacaagG
GTATCAATTTATGAAAGAAAGGACTTCTTTCACcaaaataataatcaaaa
t Run BLAST on NCBI protein sequence of TCONS_00055794-protein >TCONS_00055794-protein ID=TCONS_00055794-protein|Name=TCONS_00055794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MLKYLILFALLLWFCEAGDVRCKCICPKETHSNKSNIIVVNNLTSPDECH
CSNIVGREETFCLRCECKFETRNTVLIKAIIIIVLLSIATLYVYMFICMI
QKRCKKPELSVTSDAIQEQLKEPVVRKRFNSTIGQIERRMTLWQSQVDEQ
RNNVFGSTS Run BLAST on NCBI transcript from alignment at scaffold_259:8191..9491 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055794 ID=TCONS_00055794|Name=TCONS_00055794|organism=Clytia hemisphaerica|type=transcript|length=1301bp|location=Sequence derived from alignment at scaffold_259:8191..9491 (Clytia hemisphaerica)
attttgattattattttgGTGAAAGAAGTCCTTTCTTTCATAAATTGATA
CCcttgtttttagcctttttAACGTCTTTAATAAAAATAGACGTTTAGTt
tttttggacatattttaagTTAGACTTTGTTCTGATTGATTctgaaacaa
tttttgaaaaatctttttactaCTGTCAGCAATATCAGATCAAGGAGGGT
AAGTTATTTCAGACACACCCAATATTAATCTAAATATAAGTATTAACcta
ttcaaaaagatttttccttcATTGATTTTAACGTAAACAAACATGTCCTG
ATTATATATTTTACaatattctgttttttttctttaatgaATAAAACAAT
AACTTTTTGTTACTCTTTTAGGGAATTTAAAACAATAGACATAAATAGGA
ATCTAAATGTGTAATATTCTGAAGAAAAATGCTGAAATATTTGATTCTGT
TTGCTCTCTTGTTATGGTTTTGTGAGGCTGGTGATGTTAGATGTAAATGT
ATTTGTCCGAAAGAAACACATTCTAACAAATCAAACATCATCGTTGTCAA
TAATCTCACTTCACCAGATGAATGCCATTGCAGTAATATAGTTGGTCGAG
AAGAGACATTCTGTTTGAGATGTGAGTGTAAATTTGAAACCAGGAATACT
GTGTTGATTAAAGCTATCATTATTATTGTTTTACTGTCCATTGCAACATT
GTATGTCTACATGTTCATTTGTATGATTCAAAAGAGGTGTAAGAAACCAG
AGTTGAGCGTCACCTCAGACGCCATACAAGAACAGCTGAAAGAACCGGTG
GTCAGAAAGAGATTTAATTCAACCATTGGTCAAATTGAAAGAAGAATGAC
TTTGTGGCAAAGTCAAGTTGATGAACAGAGAAATAATGTTTTTGGCTCCA
CAAGTTAAAACGAAATGCTTTATTAAGAATGATGAAATCTCAATCATGAT
CCCTTAATTATTTAGTAAGTTGCGACtgttattttatgtttttgctgCTT
GTATACTATTATTATTACTCCCTTTACTccctatttttgtaatttgtcTC
TGAATAtacatatttttctaatttatgATTTAATTTTTCTACTGTAATTT
TGTATAAGTTAATTCTGttgaatttttaaagaaatttaattttaattaaa
gATATCATTATACTAGTGAAAatacttttcgaaaagtgtatttttttggT
GTATTGATCTTACATGACCTTGCTGGATATACGAAGAATTTTTGAATGAT
ATCTTTTAAGTAGTATTAACCTTTTTGTTAGAAGAATTTAAAGACAACTT
G Coding sequence (CDS) from alignment at scaffold_259:8191..9491 >TCONS_00055794 ID=TCONS_00055794|Name=TCONS_00055794|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_259:8191..9491 (Clytia hemisphaerica)
ATGCTGAAATATTTGATTCTGTTTGCTCTCTTGTTATGGTTTTGTGAGGC
TGGTGATGTTAGATGTAAATGTATTTGTCCGAAAGAAACACATTCTAACA
AATCAAACATCATCGTTGTCAATAATCTCACTTCACCAGATGAATGCCAT
TGCAGTAATATAGTTGGTCGAGAAGAGACATTCTGTTTGAGATGTGAGTG
TAAATTTGAAACCAGGAATACTGTGTTGATTAAAGCTATCATTATTATTG
TTTTACTGTCCATTGCAACATTGTATGTCTACATGTTCATTTGTATGATT
CAAAAGAGGTGTAAGAAACCAGAGTTGAGCGTCACCTCAGACGCCATACA
AGAACAGCTGAAAGAACCGGTGGTCAGAAAGAGATTTAATTCAACCATTG
GTCAAATTGAAAGAAGAATGACTTTGTGGCAAAGTCAAGTTGATGAACAG
AGAAATAATGTTTTTGGCTCCACAAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055794-exon-scaffold_259-1491911889:8191..9491 | TCONS_00055794-exon-scaffold_259-1491911889:8191..9491 | Clytia hemisphaerica | exon |
| TCONS_00055794-exon-scaffold_259-1510915933:8191..9491 | TCONS_00055794-exon-scaffold_259-1510915933:8191..9491 | Clytia hemisphaerica | exon |
| TCONS_00055794-exon-scaffold_259-1575043694:8191..9491 | TCONS_00055794-exon-scaffold_259-1575043694:8191..9491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_259 | supercontig | scaffold_259:8191..9491 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008853 | TMEM9 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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