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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055781 ID=TCONS_00055781|Name=TCONS_00055781|organism=Clytia hemisphaerica|type=transcript|length=4490bpRun BLAST on NCBI transcript from alignment at scaffold_259:57427..66252- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055781 ID=TCONS_00055781|Name=TCONS_00055781|organism=Clytia hemisphaerica|type=transcript|length=8826bp|location=Sequence derived from alignment at scaffold_259:57427..66252- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00055781 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 1.505e-31 Identity = 71/168 (42.26%), Postives = 89/168 (52.98%), Query Frame = 2
Query: 989 GYEEWAPWSPCTQPCDVGTQTRFRNC------LMERGCNKV-VDRKDCNTFQCPIHGAWGQWTEYGSCDRTCGFGNRKRTRKCDDPLPQHDGDYCPGTDEEIISGCNPYPCPIHGVWSDWHMEDFCKKPCGGDAYRLRYRYCDNPPPKYNGQECPG-DSEIRLPCNTE 1468
+ W PW C++ C GTQTR R C C+ + CN CPIHG W W + +C +CG G R+RTR C DP+PQ+ G C G+D + CN PCP HG WS W C + C G R RYR CDNPPP G+ C G DS+I+ CNT+
Sbjct: 4645 AWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQ-SDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMR-RYRTCDNPPPSNGGRACGGPDSQIQR-CNTD 4809 HSP 2 Score: 131.724 bits (330), Expect = 2.405e-30 Identity = 69/201 (34.33%), Postives = 100/201 (49.75%), Query Frame = 2
Query: 896 KDAPLKINCTAEEIIDSNTRRLCYCVDIESMGYEEWAPWSPCTQPCDVGTQTRFRNCLMERGCN-------KVVDRKDCNTFQCPIHGAWGQWTEYGSCDRTCGFGNRKRTRKCDDPLPQHDGDYCPGTDEEIISGCNPYPCPIHGVWSDWHMEDFCKKPCGGDAYRLRYRYCDNPPPKYNGQECPGDSEIRLPCNTERAC 1477
K+ + C A ++ S R+ V + G+ +W+ W C+ C G Q R R C N ++ ++C CP+ G+W +W+ + C R+CG GN+ RTR C++P QH G C G EII CN PCP+HG WS W C + C G + R R C+NPPP + G C G +E ++ ER C
Sbjct: 4501 KEDTSEFECVARNLMGSVLVRVPVIVQVHG-GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIM-CNIRPCPVHGAWSAWQPWGTCSESC-GKGTQTRARLCNNPPPAFGGSYCDG-AETQMQVCNERNC 4697 HSP 3 Score: 124.405 bits (311), Expect = 3.456e-28 Identity = 63/166 (37.95%), Postives = 86/166 (51.81%), Query Frame = 2
Query: 992 YEEWAPWSPCTQPCDVGTQTRFRNC---LMERGC----NKVVDRKDCNTFQCPIHGAWGQWTEYGSCDRTCGFGNRKRTRKCDDPLPQHDGDYCPGTDEEIISGCNPYPCPIHGVWSDWHMEDFCKKPCGGDAYRLRYRYCDNPPPKYNGQECPGDSEIRLPCNTE 1468
+ EW+ W CT+ C G QTR R C ++ G V+ CN CP+HGAW W +G+C +CG G + R R C++P P G YC G + + + CN CPIHG W+ W C CGG A R R R C +P P+Y G++C G CN++
Sbjct: 4589 WSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQ-MQVCNERNCPIHGKWATWASWSACSVSCGGGA-RQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD 4752 HSP 4 Score: 121.709 bits (304), Expect = 2.695e-27 Identity = 67/191 (35.08%), Postives = 91/191 (47.64%), Query Frame = 2
Query: 1001 WAPWSPCTQPCDVGTQTRFRNC---LMERGCNKV----VDRKDCNTFQCPIHGAWGQWTEYGSCDRTCGFGNRKRTRKCDDPLPQHDGDYCPGTDEEIISGCNPYPCPIHGVWSDWHMEDFCKKPCGGDAYRLRYRYCDNPPPKYNGQECPGDSEIRLPCNTERAC---KERIEVDFVAKLVDYDWDFTMV 1543
WA WS C+ C G + R R C + + G K V CN+ CP HG W W+ +G+C RTC G +R R CD+P P + G C G D +I CN CP+ G W WH C CGG + R R CD+P P G+ CPGD+ CN + AC +R + + D ++ +
Sbjct: 4706 WASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQI-QRCNTDMCPVDGSWGSWHSWSQCSASCGG-GEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQ-ACPGGPQRARGSVIGNINDVEFGIAFL 4893 The following BLAST results are available for this feature:
BLAST of TCONS_00055781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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