TCONS_00055776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055776
Unique NameTCONS_00055776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055776 ID=TCONS_00055776|Name=TCONS_00055776|organism=Clytia hemisphaerica|type=transcript|length=1448bp
GCTCCTTCAAAGATGGCGGACTGACACGAGTTGGTCTCGGTGTAATTCGA
TTTGATATTAACTGTTtatcttgttgttttttcacactCCAGAAACATTA
ATCAGAATAATCAGAAATATcattcattcaaatttcttttaggGCTTTAA
TTTATTTAATACGATCATAATGCCTATCAGCTGTCGCTTCTATCGTCAGA
AATACCCAGAGATCGATGACATCGTCATGGTCAACGTTCGCTCCATCGCG
GAGATGGGCGCATATGTTCACCTGTTGGAATACAAAAATATTGAAGGAAT
GATCTTACTCAGTGAACTTTCAAGGAGGCGTATTCGTTCCATTAATAAAT
TGATTCGAGTTGGACGAAACGAATGTGTTGTAGTCATCCGTGTAGATAAA
GACAAAGGGTATATCGATTTATCGAAACGTCGCGTTTCAATTGAAGAAGT
CAAAAAATGTGAAGAGAAATTTACTAGAGGAAAAACCGTAGCAAGTATAT
TACGTCACGTTGGTGAAATTCTCAAGTATGAATCAGACGAAGAATTAGAA
GACTTGTTTGAAAAAACTGCATGGTTCTTCGATGAAAAATATAAGACTAC
TGGAGGTGCTTACGAAGCTTTCAAACACGCTGTAACGGAGCCAACGATAT
TAGACGAATGCGATTTGGACGAGAAAACAAAAGAGGTTTTGATGACGAAT
ATCAACAGGCGTATGATGACACAAGCTGTCAAGGTCAGAAGTGATATCGA
GGTCAGTTGCTATAGTTACGAAGGGATCGACGCCATCAAAGAAGCGTTAC
GTCAAGGTGTCAAACTTTCAACTGAAGAACTACCTATCAAAgtCAATTTA
ATCGCTCCACCATTATACGTAATCACTATGACAACGCTAGATCGTGACGG
AGCTCTGGAAGCCATCGGACGCGCCAATAACGCAATCAAAGAATCTATAG
AAAATAATAAAGGAACCTTCGTCGTTAAAATGGAACCTAAAGTTGTGACG
GACTCAGACGAAGCAGACTTGCAGAAGACACTGGAACAACTTGAACAAAT
GAACCAAGAAAAAGATGGCGACGACGAtggagaaagcgaaagtgaaagcg
aAGATGACGAGGAAGAACCGGCAGCCGAAGAATAAAAGAATGCCTCGAGG
CCGGAACATTTGTAGAAGGCGTTCATGTTTGGGCGGCATAAGGATTATTG
CCTATCAAAGGAGTTATTAGTCAATCTTTCTTATGCCGCCCATTTGTGAA
TAATTTCTTTagtaaatttattaaaaaagatctttaaatAACATCTAAAA
TATAGAATTTTTCATTACACTAAAGTTTCTTCCTCaagttttaagatttt
ttccccaaaattaCTTATCATCGAGAAATAGATTTTAAGATCGATAATTT
AGCTGAGTACGATATTTATGCCAagtcagcaaaaatttgaaccaaaat
Run BLAST on NCBI

protein sequence of TCONS_00055776-protein

>TCONS_00055776-protein ID=TCONS_00055776-protein|Name=TCONS_00055776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MPISCRFYRQKYPEIDDIVMVNVRSIAEMGAYVHLLEYKNIEGMILLSEL
SRRRIRSINKLIRVGRNECVVVIRVDKDKGYIDLSKRRVSIEEVKKCEEK
FTRGKTVASILRHVGEILKYESDEELEDLFEKTAWFFDEKYKTTGGAYEA
FKHAVTEPTILDECDLDEKTKEVLMTNINRRMMTQAVKVRSDIEVSCYSY
EGIDAIKEALRQGVKLSTEELPIKVNLIAPPLYVITMTTLDRDGALEAIG
RANNAIKESIENNKGTFVVKMEPKVVTDSDEADLQKTLEQLEQMNQEKDG
DDDGESESESEDDEEEPAAEE
Run BLAST on NCBI

transcript from alignment at scaffold_259:15782..29073+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055776 ID=TCONS_00055776|Name=TCONS_00055776|organism=Clytia hemisphaerica|type=transcript|length=13292bp|location=Sequence derived from alignment at scaffold_259:15782..29073+ (Clytia hemisphaerica)
GCTCCTTCAAAGATGGCGGACTGACACGAGTTGGTCTCGGTGTAATTCGA
TTTGATATTAACTGTTtatcttgttgttttttcacactCCAGAAACATTA
ATCAGAATAATCAGAAATATcattcattcaaatttcttttaggGCTTTAA
TTTATTTAATACGATCATAATGCCTATCAGCTGTCGCTTCTATCGTCAGA
AATACCCAGAGGTAAGGTGTCTAAttttgtttcaattaaatttataattt
ttcttcatttttgtcaAGTCTAGTTTCAGTCTAGCTGAGGGTGTCAGATA
TTACCAGATATAGGTTTTTGTAAGGAGATTTGCCTCCCCTCCTTCCTAAC
GCTGCCTTGATTTGTTGAAAATAGCATATCTGAACTACAAGCCCAATTTA
TGACTCGCCATAAAGAAAGCAAaagcgacactatctttcagttaTAGTCA
CACGACTAGCGTCCCGCctaaatgcgtatcaaagattaatgctgcgaaag
cgctaccgtgaaaaagggtaacttgcatcagtggaggctaacatgcatat
accCCAATTCACAGACCAACTAGAGCAGTATTACTTCTCTTCAAAGTGTT
GACATGGAAACATTATGACAAAATTACTTGACAATAGAAAAACGTACCTT
TGATcagaatcacttttcttttcccaCGTCAACATGTCACAAGTTTCGAA
GAGCGTGATTGTAAATGTCTTTTGCCTACTCTCCTCTGCACACTCTCCCC
GTTTTCGCcacttgtttaaaaaaaatgtcaaaatgggGTGGTTTCCATAA
GGTTgcgtacttacttttttttGCCGCCCCTGTCTCTCAAGGGTGGCTGA
AGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGTGAGGTCATTTGGGAAACG
CAATTCATGGTAATTATAATTATCTTTCCTCAATTAATTACatgttttct
taaatttgattttcatattACAAGGTGAGAAAACCATGACCAGACAAGAC
TGTGAATTGGggtatatgcatgttagcctccactgatgcaagttaccctt
tttcacggtatatcgtttacttgactctcaagcaaaaaaatgctgcgcaa
aacttctaaagggattcatgaaaaaataaccctgcgctttttaatgaaat
taacattttcaaaaacgttgagaaattgcctaaaatttaagcctagccaa
ccttgaaaactattttgaagatcaacttcccaagaaaacaGTCTGGGaga
tcctctcaattgcacgcttatgttcggaggccgtaagcgcgcaattgcac
agttatcaaaatggcagaattcttatcgaaattgttctgaaacgggcggt
aagcgttTAGCAAGATTGATGGGTGACGGCTTTTGaggtaagcgtgcaat
tgcacgctttaatatttttgacacgcaATACAttgtttaggagtgtcgac
tgcgcacgcgtcaatccaattttccattgttttgattttagcgaccacgg
aaaattcactctcctccgtaaaaaaacggtgGGTAAtcatctggttctca
taaggaaacatagcagaaaaacggtaggtaaagaactccttttaatcata
ccgtaggatcgtctaatctcgacatacgtcttgcaatctcgacaccggat
ctgtaaaataatcaaaacaaaccttgaatgaaattcttggtatcattcNT
CCTCtcgatgaatttttgtgaaattttcaggagagacttataaaattatc
attgatatcatgttcaaatatctaaatcattctctttaaaagagagaaaa
aaattcacaatgttttcattcctctaacctttcacagtactaaagtgcgc
atttttaccttccatttttaccggcctctgcaatggagtaccgtgaagat
agcgagactcctaaatgGTGtattccttccgaaagctctgttgaatttca
aaagcctagggcagttttactcaaaatttatcgtagaagaagattccgta
aaaatggattgcccatTAAACCATGCCTTTGCCCGAATTAGAGActtctg
aaccccttgaaatccctaagcaatttcaaccggggagggagcgggcgtaa
attataaccatgcaattgcgcgcttacctGCGCTTACGCCTCGGAactta
agcgtgcaattgagaggatttcccagactggaAAAAGATCTACaagggag
gcggaacccacctagatccgcgcaccaccggataggctgtttcccggaaa
ttttgccggacctcaaataatgacccatttacatatgcggaatttttttt
actttagcgtataaaccaggccttaaaaatccaagcgctgtctcgggaat
tgaatgacaaattttatttggttgattttggctgctgcgttttttgtttc
aaactttcaagttttaattaattgtcttgcgaacttgatttgggtaactc
tcatccttgttgtgcaaatacatcctgtagatgactgatgttgttttttc
tgaacgctagatttcctagtgacTAACTGTCTTTGTTAAAAAGCTTCACT
ATCATTATTACAAcgataccgtgagaggtcctaaagccgacagcccagcc
taatcCTGACCCCcaaaataactgttatgaaagaaaattctatatttaca
aacattccctctccaagttgaacgataaactattgctagaactctcaaaa
caaaacatctaacaagatagatgtcaattaatgtaattaaaaagtgcgag
ttgtaaaaatataccttttattctggatcagttgctcatgtttaaaacga
taacagttttgtaataaaagtgacttgtgcgggaaaaataagaaacaact
tggactggtttccatcaagaaacaaacagactaaattgtaaaaatggcgc
gaagttgaaaaaagggcNactggtttccatcaagaaacaaacagacttaa
ttgtaaaaatggcgcgaagttgaaaaaatggTGGATGCGGTAGtactaat
ttgaataacaaatatcgaatcaatgaggcggcaactatcaatgccctctt
taccacctataagtctggatgtttatttacggaaggcccgcagtcggaca
gctcttcatttaagtgtactctttgacgacatatattatctttattagaa
taggagcaaggtgtcatgtaatacataataattgtaatatacgcCGTCca
tttgtattcttatcatgcaatatataatataatgtaatatacgtcgtcta
tatgtagtatccttacacaaagtcctagccccgcaatcaagccaagtgcc
agtgtaacaGGGGGcgcgcagttactacaagacagtatgacacttactac
catgttggtactgtattcagaagttatgaaaacagttactacacagtgta
gtaactgctgtttgggggtggtgccaaacactaaaactagcacttttggt
gtagtaagtgcttatattttaattctttttaaagaactttcaaaattttt
caccaaaaatgaatttttttgtgaaacaattctttgttaaaaaaaatatt
tttgttataaatggacgaaaaaaaatttgaaatttttctcagacccaact
ttgaaattatgctttccctaattatcattaaaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtgatgatatcactcaaaaacaggggtggta
cctggaaatcttttctgaaaacagttactaccaaggtgtagtaactgcaa
agggtggtggtcctgaaaaaaatgttgaaaaagcacttactacacatcat
gtcttgtagtaactgcgtgcccccccccctgagtgtaaagtaatagaaac
caggcttgattacatAAAGTtgcaaaatgagcacgctcgtatacagacct
cttttatatttttgtgtgctttggaaaatcaaaacatctcgttactttAT
ATGATGCTGTtagttactactgttgtcatttatgacgttgtgcatattgc
aataaaaaatatgttttgttataagaagcaattattgttatttggttcaa
ttggttcaatgtatcaaatctctcagtttagttgacactttggtatcttc
gttgcgtcacagtgaaaggtttgtttttatttttgtttgtatctttgaaa
gaccccatcagctttgggctgggctgtcggctttaggacctctcaccgTA
CTATCTATTTTTAGAACAACACTATCTTTGTTAAAActatactatctttt
ttaaaagtgACACTTTCTTTGTTAAAATGATACTATCTTTTGGATTGGTT
TAGCTTTTTTTCTTAGGACCCTCTCCCCACAGCCAGTCAATATCTTTAGC
CAATTGGAATCCTATTCCTAATtaagaagaaatatttaaaagtttgatAT
CTCTGAAACAAGCTACATTCGCAAATTCCAAGTATGACCAATAGGTTAGG
TATACCAAATATGAtaactaaaattgaaaaatttcattcgcGGATGGTGG
ATTATTAACGCcccaaaaaataattcaaaactaGGAATTAAACGAACTAC
CGTTTTATTATATCacgaagaaaaacagaaagtgagtttcccgcgtttta
taaatAAGATGTCAATTTTACGGTAATCTAGAAAGGCCTTTAGTGCGGTA
TAAACAAACGATTTCATTGgctgaaaaaagtcaaaacatcaagCTATATC
ACGTGATCAGAATCATGATCAGAGTGAATGGGAGCCGTGGTCATACATCA
TACAATATTTTCCCGCGTTTTAATTTGGCAAAGTTTAGTAAATTCGATGa
cgtatcaatgttttgatttttcaagtggGGATATCATCTGTTCAGAGCCA
AAATATGGTTTGTATGGGATCGAGATCGGTACAGCTGTGTCCCGAGGACC
CTCTTGGAGCAAAAAGTGCCGTTTTTTTCTATGCTCCGGAACACCGGAAG
TTTCCGGAGCACTTCCGGTGTTTCTAAGGTAGTTTTTCAAGAATTGGTTT
GCACTGGAACTGCGGAACGTTCTGTTCTAATCATGTGAAAACTAACTGCG
CATGCGCGTATTTAATAAAAATCAGTCGACTCATGGAAGTGAAACCTCAT
TATTAAACCTTAATTATTTGATATTTCGACCAGTGATACTTTTGAATATG
TGACAAATCCAATTTCATTAATGGCTGAACCATCATATCAACATTTTTTT
GtaaccagaaaaaaaattctgccaAATCTCCCGCATCTTCAGGATTTTCT
CCTGCAATATCTCCTGcgtttccaaaaattttctgatttcctgaaatgga
aaaaaaattcagattaaaaaaaaacagaatggcaaaatttactgattttg
gaaaattggaactaaaaatttcttgatttcccgattttccgatctggAAA
AATTGTATtaccggggaaaatttttctgacttGGAGCTCTCCTGCATTTT
TGTGAGgcaaagttgacagctatgtCGTTTGGTTTAGAACTCCCAAACTG
TCTAAAGAACTGTCTAAACTGTTTAATATATCTTCAGAACTAacagactt
tttgaaatttggtaaaataatagttttactatgttcatAACCATTAGTAA
AATACTCCACGTTCGTTTGCATAGAGTAGAAACATGAAATACGAAATCGA
TTTTggcaagatttttttgaaaaatgacaagatttgactgtatcttttta
ttccatttctattttatttcaaatgaaaaatttattgacaatgaatgggt
aagctttctagaaaaaaaatcttgctaAAATTGATTTcgcattttgcaat
tttgcccTACGCAAACAAGTGTGTGAAACGCCTACACCACAAAAATAGTA
tcgtttaaaaaaagaaagtgaaatgAGGCTGAAAGCACAAAAGTAGATGA
AGACTCAAGATAGTGAAGGCCCATGAATGAGCAAAGACAAGACGATGCtg
atgaaaattaaaaactaatgaaataaatattttcatatctaaaatgtttt
gaacataaaagttaaaatatatttaaattatCCATGTTGAGGATTCCAGG
ATGATTTGGCCAGCGCAGCAGtgctaagaaaaaagaaaacatggcaCAAG
AATAGAATTTgacaaaagacaaaataaagGGAGACTAGAAGTTAGGTATA
AAGAGTCACAAGAGACAATCTCGTGTAATTTATGGCACATCCAAAAAAAG
ACATGAGTTTGGGGCAAAATTGGGCCTTTTTTATAAATGACATGGTCATT
TATGTATtaaaagaagcgtattaggaTGTAGATTCCAGAAATACGTGTTA
CtgtaataaaattaattttctgtcTTTTTGAGAAATTAGGGAAAAGTgct
ttatgacgtcataaaacttaaaatttgaatatgacaAGAAAATAATTGCC
GAAACCCCcaggaaaatacaagaaataagAGACTGGTTTTCAAACTGCTT
ttgttgtttatatttttttttttactatttagTAGATGGTTTGTCTATGT
GGTCCTTTGGATCTTACcattacttttttgcttaaaatgtGGTAAATCTA
TGATTATGATTGGGAAGAAGATAAGATACAGAAATGTTTAGATTTAGATG
CATATTCTTAGTTGCACAAAAAATTTGAGCTAACAAAAAAGTATCCATGT
AACTACATGTAACTGCTTTCTGACTTTTTAATGCAAATCGATTTAGGAAG
ACGATAAGATACAGAAATGTTTAGATTTAGATGCATATTCTTAGTTGCAC
AAAAAATTTGAGCTAACAAAAAGTATCCATGTAACTGCATGTAACTGCTT
TCTGACTTTTTAATGCAAATCGATTTAGGAAGACCGGGCAATTAACCAAA
AGCATTATAATAGGAAAAAGactttacagcctggatatccaggatGGCCC
TTGACTTATCTATAGGTCAGAATGTTGCAACATTTCTTGCTTGCATGCTA
TTCTAGCAAAAGGtatcataatttcaaaattgcagACCAATGAATGCTAC
CATTTAATATAAAGTCAATTTGAGGGAAAACTGAAGAATGTTACAGCAAT
GCATTCAAAAAGTTAATGTTTTAACCATCTTTTCAAATTATCCAGAAGAC
ATGGTCaaaacattttgagattttcgGGTATTTTTTATagcgtttttcag
aatttgatTAAGTTAGAGAGAGAGTGGAAATTTCAGTACAAAGTAAGTTA
GAGCACGTAAAAATCATTtctggtttttaaaattttgcagagaatttcct
tttttatgaccatgattgtagtataTAATCTAAAACTTCAAAACTATGTT
AGTAGATTTGTTACAAACAGCAAAGAGGATTTTGAGGTTAgataataaaa
tatatttgCATATATAAACAAGTTGTTGAAAGTGCATTAGACTCTGAAGT
TAACAAGAAGGCATTTAATTAGGGAGTAAACTAGCCTGAGAGcattaaat
tattattaaatatTAAACGTTTCAAATTATACATCCTGTTTGTTGTATTT
AACTTATAAACACTGACTATGATGTTATATATATTCAATTTGCAGATCGA
TGACATCGTCATGGTCAACGTTCGCTCCATCGCGGAGATGGGCGCATATG
TTCACCTGTTGGAATACAAAAATATTGAAGGAATGATCTTACTCAGTGAA
CTTTCAAGGAGGCGTATTCGTTCCATTAATAAATTGATTCGAGTTGGACG
AAACGAATGTGTTGTAGTCATCCGTGTAGATAAAGACAAAGGTAATAGTC
TTTTCCTTACCCTCACACTTGTAAACAAACAACATTAAAAAACTACATAT
GAATGCGCTGAGAGGATTTTAGAAAGAAGATAATTTCTGTAGGCTGTTTG
CATATTTTTCATtctgttgattttgttttagcaaaagtattttctttgtt
ttttcctaacttttcctaattatgTTGTTATTATGAAATGGCATTCAGTA
GGGGGGTCaacagttagtacaagacactaTGCCTACAAACTGTTTTTTTG
GAAGACGTTAGTACTGTACACTTAgtacagttagtactaactgagTGTTG
GGTCAAATTTACATACCACCCTTGAAAATGGCATTTCGACTATcataaaa
gcaataaaattgGATAAGATAAAATCTAATCTCtcaaatgtttcaatttt
ccatctttcaataggaaaatacaacattttcaaaaatatcttagAATATT
GAATTTCTATGGCAACCGACAAAtcgtttttaagatttaaaaaataattt
ttcgaaaatttgaatttaaaaaacgaTGTTTTACCTTTTCGACATTTCAA
CAAACTACGTGAGAGCTTCCTCGAACAAGTGTTCTCGTCCTAACAATATG
CCTTATCAACATTACTCCATAacaccatgaacatataaacgactggacat
ccatctcctttgtctttttgaagataacacagctagcttcgttgccgcct
cgttaaaagcatgaaatgaaacaatagattttgatgatataccacttggg
aataccttgctaacaacgtcaaaacttcgacaaaagtctctgtNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatatcataaca
aagataacagaggcaaaatcatcgtcagcttgtcaaaactccgactaata
tttctaaattttgacttaaaagtgtctaataattttaaagagtgtcacat
tctaatttcgatattcttatgacacaggctctcaactttggcaagctatt
tttctcaagtcataaaaaaaaattactggagtgacaaaagtgattcaaaa
gtatacacgcagttgagaaactgcatttcagagttgaaaatattgataaa
atatattgcaaacttgtgaaaaaattcgaaaataatttttttgtacatta
ggagtaatgttcaagctctatcaatctttttacNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATAACACCAAATTCCTTAACTCGAACTTTAAATTTGTGTTCCATGTacc
tgttcgagttatggagactcaactaAAGTTTATTTATCCTAGTTTATAAA
TACCCCATATTTTCTATCTTGTTACTTTTCGCTTTCGAATTGGTTGATTA
AATCAAGATTTGTATAAATTAAGATCATATTTTTCTGCAGGGTATATCGA
TTTATCGAAACGTCGCGTTTCAATTGAAGAAGTCAAAAAATGTGAAGAGA
AATTTACTAGAGGAAAAACCGTATGTTATTTTGGTTTGGAACAAACTTTT
ATCATCATTGAAACGTTGTGTTTccctttttcatttattagattttttga
aattttaaaagttacttTGAGGCAATCTATACTATCTCGACCTAAACCCT
GACCTTGTGaaaaggccgaccctcgacccttgGAAAAAGCCTCGAcccaa
aaacaataaaaagccAGAACTAGATGATGAACCAGTTTGTTAGATTGCCC
AACTTTAAGGGAGCAAAAGTCTTGAAAATTTTGTAGAGACGAAGATTAAA
TTTTTTATGTTCACTTCAATATTTCTCACTACCagtcttttattttgttt
tttttattgcagGTAGCAAGTATATTACGTCACGTTGGTGAAATTCTCAA
GTATGAATCAGACGAAGAATTAGAAGACTTGTTTGAAAAAACTGCATGGT
TCTTCGATGAAAAATATAAGACTACTGGAGGTGCTTACGAAGCTTTCAAA
CACGCTGTAACGTAAGTCCTCAACTCACTTTTTACGAATAATCTTAAAAA
GCCTCCTCTCTAGTGTTTTATGAAgactgtttttaaattttgactcTGTT
TTTGAAAGGGTGTAAAAAATATATTACTAAATTGAATGTATTTCAGGGAG
CCAACGATATTAGACGAATGCGATTTGGACGAGAAAACAAAAGAGGTTTT
GATGACGAATATCAACAGGCGTATGATGACACAAGCTGTCAAGGTCAGAA
GTGATATCGAGGTCAGTTGCTATAGTTACGAAGGGATCGACGCCATCAAA
GAAGCGTTACGTCAAGGTGTCAAACTTTCAACTGAAGAACTACCTATCAA
AGTAAgtgaaagtttgattttcttttttcaaagacCTTTCTTCTCCATCA
AGATAATGATTCAAGGTGCAGAAGAGTCACCATAACTCTAACGGCAAGGG
GGATCTTTCGAGTTGAAGAGAGTCGAAATTATCNGAGTTTGATTTTCTTC
TCCATCAAGATAATGATTCAAGGTGCAGAAGAGTCACCATAACTCTAACG
GCAAGGGGGATCTTTCGAGTTGAAGAGAGTCGAAATTATCCTTTTATCTG
CGAATGAGCTGAAACAAAACAACTAGAACTTACTTGTTTATAAGGGGTAT
TTGGGtaagtgaaagtgaaaaaatagtCAGGTTTTAATCGGATCCTaact
tttctttcaatttaggtCAATTTAATCGCTCCACCATTATACGTAATCAC
TATGACAACGCTAGATCGTGACGGAGCTCTGGAAGCCATCGGACGCGCCA
ATAACGCAATCAAAGAATCTATAGAAAATAATAAAGGAACCTTCGTCGTT
AAAATGGAAGTGAGTTGATCGTTTGAAAAGTGAAACCTCATTCTTTACAT
ATTAGACAGCTCAGGTTTTAGTCATTGTCCTTCATGATAGCCAATCAAAA
TTCGACGATTTTCTGAAATCTATCATGTGATGAATTTTATGACGCGTATT
CTTTTCTTTATAGAAATTAGTAAATTGTGACggtactctaggggctgagt
taggtctcgtatgcacggtcagaaccatggtctgaaaatttcgttaatca
gagatacgaagtacttacgttttctaagttttgaaaacgaaagtacttca
tagctcgagatagcaaaattttcagaccatggttctgacctttttcttaa
tcagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaccttttt
cttaatcagcataaaatttctgatcaattggtatataatatgcagggttt
taagctcaaaaaatatttttcttaggctagcagagcctaaaggccggtct
ccacttgcgcgcgcttcgatcgctcttcttcgagcaaagcttccacgcta
ttggtcaaaagaaaaatgaagcaactccattggtgcgATATGACGTAACG
ATcgcgcgcttgaaaaaaaagttgaaatacattcaactttttttccaagc
GCGCGCTGCGTTTTtgtgacgtaatcttttctccaagcaaaaatgattga
agccaaagttgcgattgaagcgcgcgcaagtggagaccggccttaagagc
ccatgtgacgaaagaaaattttgaatccgccattatggatttcgaaattc
atgtagaaaaaaaactttttctgaattttattatttgaacggtaggcaag
accctccaaaaatttcaagtaaatgaagtaagccaatcaaaagttacagc
caggCAAATTTGGAAAccaaagtagtcatttcaaaaaatcaaaatcgaaa
atgcttcatatctccagataacgaaattttcagaccatggttctgacatt
tttcttaatcagcataaaatttgtgattgattggtatataatatgcctat
gtttaaagttaaaaataaaaaattttcaagcaagagggctaaaaagggtt
gaaaatctaaaatccgccattatggaaatttgtgcctgatccaaataacg
ccacacatgttttctgactcttcaaggactatactttcatgatcaaaaga
aaaaatgactatacgccgatgcgcatacgggacctaactcagcccctaga
gtacgGAGCTGACGGAGATTTTGTCGTGACAAATTTCTCTATTTTAAACC
TAGTATGCTTTCATGCGAAATTCGTCAGCTCTTTTTAGCAGATAACTATC
TATTTATTTTCTCTTGGGAATTCGTTGAATGGAgcctttttttagatttt
ataacATAACTTTTATCTTGGCACTATTATAGATAGAACTTGTTGGCCTA
TGCAGGCCTATGGCCTAAATATGGTCTAAGTTCACATTTCGTCAACAAAT
AATATTGTTTTCCTTATTTCTCTCCTCAGCCTAAAGTTGTGACGGACTCA
GACGAAGCAGACTTGCAGAAGACACTGGAACAACTTGAACAAATGAACCA
AGAAAAAGATGGCGACGACGAtggagaaagcgaaagtgaaagcgaAGATG
ACGAGGAAGAACCGGCAGCCGAAGAATAAAAGAATGCCTCGAGGCCGGAA
CATTTGTAGAAGGCGTTCATGTTTGGGCGGCATAAGGATTATTGCCTATC
AAAGGAGTTATTAGTCAATCTTTCTTATGCCGCCCATTTGTGAATAATTT
CTTTagtaaatttattaaaaaagatctttaaatAACATCTAAAATATAGA
ATTTTTCATTACACTAAAGTTTCTTCCTCaagttttaagattttttcccc
aaaattaCTTATCATCGAGAAATAGATTTTAAGATCGATAATTTAGCTGA
GTACGATATTTATGCCAagtcagcaaaaatttgaaccaaaat

Coding sequence (CDS) from alignment at scaffold_259:15782..29073+

>TCONS_00055776 ID=TCONS_00055776|Name=TCONS_00055776|organism=Clytia hemisphaerica|type=CDS|length=6762bp|location=Sequence derived from alignment at scaffold_259:15782..29073+ (Clytia hemisphaerica)
ATGCCTATCAGCTGTCGCTTCTATCGTCAGAAATACCCAGAGATCGATGA
CATCGTCATGGTCAACGTTCGCTCCATCGCGGAGATGGGCGCATATGTTC
ACCTGTTGGAATACAAAAATATTGAAGGAATGATCTTACTCAGTGAACTT
TCAAGGAGGCGTATTCGTTCCATTAATAAATTGATTCGAGTTGGACGAAA
CGAATGTGTTGTAGTCATCCGTGTAGATAAAGACAAAGGGTATATCGATT
TATCGAAACGTCGCGTTTCAATTGAAGAAGTCAAAAAATGTGAAGAGAAA
TTTACTAGAGGAAAAACCGTAGCAAGTATATTACGTCACGTTGGTGAAAT
TCTCAAGTATGAATCAGACGAAGAATTAGAAGACTTGTTTGAAAAAACTG
CATGGTTCTTCGATGAAAAATATAAGACTACTGGAGGTGCTTACGAAGCT
TTCAAACACGCTGTAACGGAGCCAACGATATTAGACGAATGCGATTTGGA
CGAGAAAACAAAAGAGGTTTTGATGACGAATATCAACAGGCGTATGATGA
CACAAGCTGTCAAGGTCAGAAGTGATATCGAGGTCAGTTGCTATAGTTAC
GAAGGGATCGACGCCATCAAAGAAGCGTTACGTCAAGGTGTCAAACTTTC
AACTGAAGAACTACCTATCAAAgtCAATTTAATCGCTCCACCATTATACG
TAATCACTATGACAACGCTAGATCGTGACGGAGCTCTGGAAGCCATCGGA
CGCGCCAATAACGCAATCAAAGAATCTATAGAAAATAATAAAGGAACCTT
CGTCGTTAAAATGGAACCTAAAGTTGTGACGGACTCAGACGAAGCAGACT
TGCAGAAGACACTGGAACAACTTGAACAAATGAACCAAGAAAAAGATGGC
GACGACGAtggagaaagcgaaagtgaaagcgaAGATGACGAGGAAGAACC
GGCAGCCGAAGAATAAATGCCTATCAGCTGTCGCTTCTATCGTCAGAAAT
ACCCAGAGATCGATGACATCGTCATGGTCAACGTTCGCTCCATCGCGGAG
ATGGGCGCATATGTTCACCTGTTGGAATACAAAAATATTGAAGGAATGAT
CTTACTCAGTGAACTTTCAAGGAGGCGTATTCGTTCCATTAATAAATTGA
TTCGAGTTGGACGAAACGAATGTGTTGTAGTCATCCGTGTAGATAAAGAC
AAAGGGTATATCGATTTATCGAAACGTCGCGTTTCAATTGAAGAAGTCAA
AAAATGTGAAGAGAAATTTACTAGAGGAAAAACCGTAGCAAGTATATTAC
GTCACGTTGGTGAAATTCTCAAGTATGAATCAGACGAAGAATTAGAAGAC
TTGTTTGAAAAAACTGCATGGTTCTTCGATGAAAAATATAAGACTACTGG
AGGTGCTTACGAAGCTTTCAAACACGCTGTAACGGAGCCAACGATATTAG
ACGAATGCGATTTGGACGAGAAAACAAAAGAGGTTTTGATGACGAATATC
AACAGGCGTATGATGACACAAGCTGTCAAGGTCAGAAGTGATATCGAGGT
CAGTTGCTATAGTTACGAAGGGATCGACGCCATCAAAGAAGCGTTACGTC
AAGGTGTCAAACTTTCAACTGAAGAACTACCTATCAAAgtCAATTTAATC
GCTCCACCATTATACGTAATCACTATGACAACGCTAGATCGTGACGGAGC
TCTGGAAGCCATCGGACGCGCCAATAACGCAATCAAAGAATCTATAGAAA
ATAATAAAGGAACCTTCGTCGTTAAAATGGAACCTAAAGTTGTGACGGAC
TCAGACGAAGCAGACTTGCAGAAGACACTGGAACAACTTGAACAAATGAA
CCAAGAAAAAGATGGCGACGACGAtggagaaagcgaaagtgaaagcgaAG
ATGACGAGGAAGAACCGGCAGCCGAAGAATAAATGCCTATCAGCTGTCGC
TTCTATCGTCAGAAATACCCAGAGATCGATGACATCGTCATGGTCAACGT
TCGCTCCATCGCGGAGATGGGCGCATATGTTCACCTGTTGGAATACAAAA
ATATTGAAGGAATGATCTTACTCAGTGAACTTTCAAGGAGGCGTATTCGT
TCCATTAATAAATTGATTCGAGTTGGACGAAACGAATGTGTTGTAGTCAT
CCGTGTAGATAAAGACAAAGGGTATATCGATTTATCGAAACGTCGCGTTT
CAATTGAAGAAGTCAAAAAATGTGAAGAGAAATTTACTAGAGGAAAAACC
GTAGCAAGTATATTACGTCACGTTGGTGAAATTCTCAAGTATGAATCAGA
CGAAGAATTAGAAGACTTGTTTGAAAAAACTGCATGGTTCTTCGATGAAA
AATATAAGACTACTGGAGGTGCTTACGAAGCTTTCAAACACGCTGTAACG
GAGCCAACGATATTAGACGAATGCGATTTGGACGAGAAAACAAAAGAGGT
TTTGATGACGAATATCAACAGGCGTATGATGACACAAGCTGTCAAGGTCA
GAAGTGATATCGAGGTCAGTTGCTATAGTTACGAAGGGATCGACGCCATC
AAAGAAGCGTTACGTCAAGGTGTCAAACTTTCAACTGAAGAACTACCTAT
CAAAgtCAATTTAATCGCTCCACCATTATACGTAATCACTATGACAACGC
TAGATCGTGACGGAGCTCTGGAAGCCATCGGACGCGCCAATAACGCAATC
AAAGAATCTATAGAAAATAATAAAGGAACCTTCGTCGTTAAAATGGAACC
TAAAGTTGTGACGGACTCAGACGAAGCAGACTTGCAGAAGACACTGGAAC
AACTTGAACAAATGAACCAAGAAAAAGATGGCGACGACGAtggagaaagc
gaaagtgaaagcgaAGATGACGAGGAAGAACCGGCAGCCGAAGAATAAAT
GCCTATCAGCTGTCGCTTCTATCGTCAGAAATACCCAGAGATCGATGACA
TCGTCATGGTCAACGTTCGCTCCATCGCGGAGATGGGCGCATATGTTCAC
CTGTTGGAATACAAAAATATTGAAGGAATGATCTTACTCAGTGAACTTTC
AAGGAGGCGTATTCGTTCCATTAATAAATTGATTCGAGTTGGACGAAACG
AATGTGTTGTAGTCATCCGTGTAGATAAAGACAAAGGGTATATCGATTTA
TCGAAACGTCGCGTTTCAATTGAAGAAGTCAAAAAATGTGAAGAGAAATT
TACTAGAGGAAAAACCGTAGCAAGTATATTACGTCACGTTGGTGAAATTC
TCAAGTATGAATCAGACGAAGAATTAGAAGACTTGTTTGAAAAAACTGCA
TGGTTCTTCGATGAAAAATATAAGACTACTGGAGGTGCTTACGAAGCTTT
CAAACACGCTGTAACGGAGCCAACGATATTAGACGAATGCGATTTGGACG
AGAAAACAAAAGAGGTTTTGATGACGAATATCAACAGGCGTATGATGACA
CAAGCTGTCAAGGTCAGAAGTGATATCGAGGTCAGTTGCTATAGTTACGA
AGGGATCGACGCCATCAAAGAAGCGTTACGTCAAGGTGTCAAACTTTCAA
CTGAAGAACTACCTATCAAAgtCAATTTAATCGCTCCACCATTATACGTA
ATCACTATGACAACGCTAGATCGTGACGGAGCTCTGGAAGCCATCGGACG
CGCCAATAACGCAATCAAAGAATCTATAGAAAATAATAAAGGAACCTTCG
TCGTTAAAATGGAACCTAAAGTTGTGACGGACTCAGACGAAGCAGACTTG
CAGAAGACACTGGAACAACTTGAACAAATGAACCAAGAAAAAGATGGCGA
CGACGAtggagaaagcgaaagtgaaagcgaAGATGACGAGGAAGAACCGG
CAGCCGAAGAATAAATGCCTATCAGCTGTCGCTTCTATCGTCAGAAATAC
CCAGAGATCGATGACATCGTCATGGTCAACGTTCGCTCCATCGCGGAGAT
GGGCGCATATGTTCACCTGTTGGAATACAAAAATATTGAAGGAATGATCT
TACTCAGTGAACTTTCAAGGAGGCGTATTCGTTCCATTAATAAATTGATT
CGAGTTGGACGAAACGAATGTGTTGTAGTCATCCGTGTAGATAAAGACAA
AGGGTATATCGATTTATCGAAACGTCGCGTTTCAATTGAAGAAGTCAAAA
AATGTGAAGAGAAATTTACTAGAGGAAAAACCGTAGCAAGTATATTACGT
CACGTTGGTGAAATTCTCAAGTATGAATCAGACGAAGAATTAGAAGACTT
GTTTGAAAAAACTGCATGGTTCTTCGATGAAAAATATAAGACTACTGGAG
GTGCTTACGAAGCTTTCAAACACGCTGTAACGGAGCCAACGATATTAGAC
GAATGCGATTTGGACGAGAAAACAAAAGAGGTTTTGATGACGAATATCAA
CAGGCGTATGATGACACAAGCTGTCAAGGTCAGAAGTGATATCGAGGTCA
GTTGCTATAGTTACGAAGGGATCGACGCCATCAAAGAAGCGTTACGTCAA
GGTGTCAAACTTTCAACTGAAGAACTACCTATCAAAgtCAATTTAATCGC
TCCACCATTATACGTAATCACTATGACAACGCTAGATCGTGACGGAGCTC
TGGAAGCCATCGGACGCGCCAATAACGCAATCAAAGAATCTATAGAAAAT
AATAAAGGAACCTTCGTCGTTAAAATGGAACCTAAAGTTGTGACGGACTC
AGACGAAGCAGACTTGCAGAAGACACTGGAACAACTTGAACAAATGAACC
AAGAAAAAGATGGCGACGACGAtggagaaagcgaaagtgaaagcgaAGAT
GACGAGGAAGAACCGGCAGCCGAAGAATAAATGCCTATCAGCTGTCGCTT
CTATCGTCAGAAATACCCAGAGATCGATGACATCGTCATGGTCAACGTTC
GCTCCATCGCGGAGATGGGCGCATATGTTCACCTGTTGGAATACAAAAAT
ATTGAAGGAATGATCTTACTCAGTGAACTTTCAAGGAGGCGTATTCGTTC
CATTAATAAATTGATTCGAGTTGGACGAAACGAATGTGTTGTAGTCATCC
GTGTAGATAAAGACAAAGGGTATATCGATTTATCGAAACGTCGCGTTTCA
ATTGAAGAAGTCAAAAAATGTGAAGAGAAATTTACTAGAGGAAAAACCGT
AGCAAGTATATTACGTCACGTTGGTGAAATTCTCAAGTATGAATCAGACG
AAGAATTAGAAGACTTGTTTGAAAAAACTGCATGGTTCTTCGATGAAAAA
TATAAGACTACTGGAGGTGCTTACGAAGCTTTCAAACACGCTGTAACGGA
GCCAACGATATTAGACGAATGCGATTTGGACGAGAAAACAAAAGAGGTTT
TGATGACGAATATCAACAGGCGTATGATGACACAAGCTGTCAAGGTCAGA
AGTGATATCGAGGTCAGTTGCTATAGTTACGAAGGGATCGACGCCATCAA
AGAAGCGTTACGTCAAGGTGTCAAACTTTCAACTGAAGAACTACCTATCA
AAgtCAATTTAATCGCTCCACCATTATACGTAATCACTATGACAACGCTA
GATCGTGACGGAGCTCTGGAAGCCATCGGACGCGCCAATAACGCAATCAA
AGAATCTATAGAAAATAATAAAGGAACCTTCGTCGTTAAAATGGAACCTA
AAGTTGTGACGGACTCAGACGAAGCAGACTTGCAGAAGACACTGGAACAA
CTTGAACAAATGAACCAAGAAAAAGATGGCGACGACGAtggagaaagcga
aagtgaaagcgaAGATGACGAGGAAGAACCGGCAGCCGAAGAATAAATGC
CTATCAGCTGTCGCTTCTATCGTCAGAAATACCCAGAGATCGATGACATC
GTCATGGTCAACGTTCGCTCCATCGCGGAGATGGGCGCATATGTTCACCT
GTTGGAATACAAAAATATTGAAGGAATGATCTTACTCAGTGAACTTTCAA
GGAGGCGTATTCGTTCCATTAATAAATTGATTCGAGTTGGACGAAACGAA
TGTGTTGTAGTCATCCGTGTAGATAAAGACAAAGGGTATATCGATTTATC
GAAACGTCGCGTTTCAATTGAAGAAGTCAAAAAATGTGAAGAGAAATTTA
CTAGAGGAAAAACCGTAGCAAGTATATTACGTCACGTTGGTGAAATTCTC
AAGTATGAATCAGACGAAGAATTAGAAGACTTGTTTGAAAAAACTGCATG
GTTCTTCGATGAAAAATATAAGACTACTGGAGGTGCTTACGAAGCTTTCA
AACACGCTGTAACGGAGCCAACGATATTAGACGAATGCGATTTGGACGAG
AAAACAAAAGAGGTTTTGATGACGAATATCAACAGGCGTATGATGACACA
AGCTGTCAAGGTCAGAAGTGATATCGAGGTCAGTTGCTATAGTTACGAAG
GGATCGACGCCATCAAAGAAGCGTTACGTCAAGGTGTCAAACTTTCAACT
GAAGAACTACCTATCAAAgtCAATTTAATCGCTCCACCATTATACGTAAT
CACTATGACAACGCTAGATCGTGACGGAGCTCTGGAAGCCATCGGACGCG
CCAATAACGCAATCAAAGAATCTATAGAAAATAATAAAGGAACCTTCGTC
GTTAAAATGGAACCTAAAGTTGTGACGGACTCAGACGAAGCAGACTTGCA
GAAGACACTGGAACAACTTGAACAAATGAACCAAGAAAAAGATGGCGACG
ACGAtggagaaagcgaaagtgaaagcgaAGATGACGAGGAAGAACCGGCA
GCCGAAGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035117XLOC_035117Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055776-proteinTCONS_00055776-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055776-exon-scaffold_259-1491911889:15782..15992TCONS_00055776-exon-scaffold_259-1491911889:15782..15992Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1510915933:15782..15992TCONS_00055776-exon-scaffold_259-1510915933:15782..15992Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1575043694:15782..15992TCONS_00055776-exon-scaffold_259-1575043694:15782..15992Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1491911889:23777..23972TCONS_00055776-exon-scaffold_259-1491911889:23777..23972Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1510915933:23777..23972TCONS_00055776-exon-scaffold_259-1510915933:23777..23972Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1575043694:23777..23972TCONS_00055776-exon-scaffold_259-1575043694:23777..23972Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1491911889:25622..25701TCONS_00055776-exon-scaffold_259-1491911889:25622..25701Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1510915933:25622..25701TCONS_00055776-exon-scaffold_259-1510915933:25622..25701Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1575043694:25622..25701TCONS_00055776-exon-scaffold_259-1575043694:25622..25701Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1491911889:26044..26192TCONS_00055776-exon-scaffold_259-1491911889:26044..26192Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1510915933:26044..26192TCONS_00055776-exon-scaffold_259-1510915933:26044..26192Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1575043694:26044..26192TCONS_00055776-exon-scaffold_259-1575043694:26044..26192Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1491911889:26328..26532TCONS_00055776-exon-scaffold_259-1491911889:26328..26532Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1510915933:26328..26532TCONS_00055776-exon-scaffold_259-1510915933:26328..26532Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1575043694:26328..26532TCONS_00055776-exon-scaffold_259-1575043694:26328..26532Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1491911889:26897..27040TCONS_00055776-exon-scaffold_259-1491911889:26897..27040Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1510915933:26897..27040TCONS_00055776-exon-scaffold_259-1510915933:26897..27040Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1575043694:26897..27040TCONS_00055776-exon-scaffold_259-1575043694:26897..27040Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1491911889:28611..29073TCONS_00055776-exon-scaffold_259-1491911889:28611..29073Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1510915933:28611..29073TCONS_00055776-exon-scaffold_259-1510915933:28611..29073Clytia hemisphaericaexon
TCONS_00055776-exon-scaffold_259-1575043694:28611..29073TCONS_00055776-exon-scaffold_259-1575043694:28611..29073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_259supercontigscaffold_259:15782..29073 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
167.854	160.026	82.1226	75.0154	157.741	126.846	251.327	256.623	265.569	230.588	315.341	267.402	248.996	279.905	232.884	229.348	228.992	253.856	157.642	162.158	253.015	260.327	242.23	234.848	259.842	282.882	193.018	195.057	166.79	157.143
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR024055TIF2_asu_C
IPR011488TIF_2_asu
IPR003029S1_domain
IPR024054TIF2_asu_middle
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
Blast
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BLAST of TCONS_00055776 vs. Swiss-Prot (Human)
Match: IF2A (Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3)

HSP 1 Score: 396.356 bits (1017), Expect = 5.838e-135
Identity = 205/297 (69.02%), Postives = 248/297 (83.50%), Query Frame = 2 
Query:  170 MP-ISCRFYRQKYPEIDDIVMVNVRSIAEMGAYVHLLEYKNIEGMXXXXXXXXXXXXXXNKLIRVGRNECVVVIRVDKDKGYIDLSKRRVSIEEVKKCEEKFTRGKTVASILRHVGEILKYESDEELEDLFEKTAWFFDEKYKTTG-GAYEAFKHAVTEPTILDECDLDEKTKEVLMTNINRRMMTQAVKVRSDIEVSCYSYEGIDAIKEALRQGVKLSTEELPIKVNLIAPPLYVITMTTLDRDGALEAIGRANNAIKESIENNKGTFVVKMEPKVVTDSDEADLQKTLEQLEQMN 1054
            MP +SCRFY+ K+PE++D+VMVNVRSIAEMGAYV LLEY NIEGMILLSELSRRRIRSINKLIR+GRNECVVVIRVDK+KGYIDLSKRRVS EE  KCE+KFT+ KTV SILRHV E+L+Y  DE+LE LF++TAW FD+KYK  G GAY+AFKHAV++P+ILD  DL+E  +EVL+ NINRR+  QAVK+R+DIEV+CY YEGIDA+KEALR G+  STE +PIK+NLIAPP YV+T TTL+R   L  + +A   IKE IE  +G F V+MEPKVVTD+DE +L + +E+LE+ N
Sbjct:    1 MPGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDPSILDSLDLNEDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLERTEGLSVLSQAMAVIKEKIEEKRGVFNVQMEPKVVTDTDETELARQMERLEREN 297
The following BLAST results are available for this feature:
BLAST of TCONS_00055776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF2A5.838e-13569.02Eukaryotic translation initiation factor 2 subunit... [more]
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