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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055766 ID=TCONS_00055766|Name=TCONS_00055766|organism=Clytia hemisphaerica|type=transcript|length=1420bp
GAATCTTGAACATGGAATCTCGATTTATCGAATCGAAAGCCTTGCGAAAG
TCGATAAAGGTAGCAACAAGTGGGAGCTGTTTAATTGTGCAACCTTCAAT
AATGCGTCTCAGTATATGGACTTGTTGGGCGCAACTTCTACCGGCTCGAA
AACCAGCTTGGTTTGGACGAAGTCTACGATCGACGATATCGTATATTCTG
TTTAGTAGGAGTTTGTTGTAGACTTTAGCACAGATTGACATAAGTGTTAT
ACCTCTGTAATTATTCATTAAAGATAGGTCTCCCTTTTTAGGGACAGGAA
TAATTAAATTGGTGATCCATTGTTTAGGAGGAACTTTGTTAACGTAAACT
TCGTGGCAAAAATCATGGACAATGGAAGCCATTCCATCGCCTCCGTCAAG
AAGAGCTTCTGGAGTGATTCCAAAGTCCAGTCCAGGtgatttgtttcttt
ttagagattttatgGCTTTGATAGTTTCATTAAGTGTCGGGGGATCAGTA
TTTATTGGAAGATCAATTTCAGCAGGTGTGGGATCAGCAGCTGGTGTAGT
TGATCTGTTGTTGAGGAGAGCACTAAAGTATTCCTTCCATTCTTTGAGGA
TTTCCTGCTGATTAGCTGGGTCTGTACCGTCCTGTTTTTTTACTTTCGAG
GgtaattgacatttttttccagATAACTCGTTGATTATGGACCAGACTTT
GTTAACTTCTTTCTTGTTGCTAGCCTCTGTAAGTTCAGCGAGTTGCTTTT
CAAGATGTTTCCGTTCGTCATCTTTATATGATTGATTCAATGAGACATTT
AGGTCTTTCAGTTGTCTCCTTGAGACAGTAGATTTAGAGATGATGTCTCT
TTTCTTTGCAGCATCCCGAAGTTTCCTCATATCCTCGGTTTCTTTGGAGA
CCCAGGAGGGCAAACCTGTTGGTACACGTTTTCCGAGAACTTCCAGGGCT
ACTTCACAGGTCGTTTTCTCGAAAGCATCGTAGCGTTCTGTGATTGTTTC
TATTTGAGGAATGTTTCGGAAACGATTTGAGAGTTTCAGTTGAAACTCTC
TTTTGACTTCCAAGGACTCAAGTTTCTTCCAGTTGTATTTTTGTCTTGCG
AGGGAATTTCCTTTTGTCGTTCTAAGGCTGACTTTAACAGTAGCACTGAG
GATTCGATGATCAGAGTCGACCTCTACAGTGTTGTAAGCTCTACAGTTTC
TAAGAGAGTTTCTCCATTTACTGCTGATAAGTATGTGGTCGAGCTGGGCG
TGGGTGCCAGAAGGATGCCGCCAAGTCCAAAACCGCGAGACTGGTTGAGG
AAAGTGTGATTGTGCGTGGGTAAGGTTTGATCCTAGACAATACTCTATGA
GTCTCTCGCCATTATCATTTGTTTCATCATGCATAAGGGTGGTACCAATA
CTACTCGGGGCGAATTCATG Run BLAST on NCBI protein sequence of TCONS_00055766-protein >TCONS_00055766-protein ID=TCONS_00055766-protein|Name=TCONS_00055766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
HEFAPSSIGTTLMHDETNDNGERLIEYCLGSNLTHAQSHFPQPVSRFWTW
RHPSGTHAQLDHILISSKWRNSLRNCRAYNTVEVDSDHRILSATVKVSLR
TTKGNSLARQKYNWKKLESLEVKREFQLKLSNRFRNIPQIETITERYDAF
EKTTCEVALEVLGKRVPTGLPSWVSKETEDMRKLRDAAKKRDIISKSTVS
RRQLKDLNVSLNQSYKDDERKHLEKQLAELTEASNKKEVNKVWSIINELS
GKKCQLPSKVKKQDGTDPANQQEILKEWKEYFSALLNNRSTTPAADPTPA
EIDLPINTDPPTLNETIKAIKSLKRNKSPGLDFGITPEALLDGGDGMASI
VHDFCHEVYVNKVPPKQWITNLIIPVPKKGDLSLMNNYRGITLMSICAKV
YNKLLLNRIYDIVDRRLRPNQAGFRAGRSCAQQVHILRRIIEGCTIKQLP
LVATFIDFRKAFDSINRDSMFKI Run BLAST on NCBI transcript from alignment at scaffold_258:299808..301227 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055766 ID=TCONS_00055766|Name=TCONS_00055766|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at scaffold_258:299808..301227 (Clytia hemisphaerica)
CATGAATTCGCCCCGAGTAGTATTGGTACCACCCTTATGCATGATGAAAC
AAATGATAATGGCGAGAGACTCATAGAGTATTGTCTAGGATCAAACCTTA
CCCACGCACAATCACACTTTCCTCAACCAGTCTCGCGGTTTTGGACTTGG
CGGCATCCTTCTGGCACCCACGCCCAGCTCGACCACATACTTATCAGCAG
TAAATGGAGAAACTCTCTTAGAAACTGTAGAGCTTACAACACTGTAGAGG
TCGACTCTGATCATCGAATCCTCAGTGCTACTGTTAAAGTCAGCCTTAGA
ACGACAAAAGGAAATTCCCTCGCAAGACAAAAATACAACTGGAAGAAACT
TGAGTCCTTGGAAGTCAAAAGAGAGTTTCAACTGAAACTCTCAAATCGTT
TCCGAAACATTCCTCAAATAGAAACAATCACAGAACGCTACGATGCTTTC
GAGAAAACGACCTGTGAAGTAGCCCTGGAAGTTCTCGGAAAACGTGTACC
AACAGGTTTGCCCTCCTGGGTCTCCAAAGAAACCGAGGATATGAGGAAAC
TTCGGGATGCTGCAAAGAAAAGAGACATCATCTCTAAATCTACTGTCTCA
AGGAGACAACTGAAAGACCTAAATGTCTCATTGAATCAATCATATAAAGA
TGACGAACGGAAACATCTTGAAAAGCAACTCGCTGAACTTACAGAGGCTA
GCAACAAGAAAGAAGTTAACAAAGTCTGGTCCATAATCAACGAGTTATct
ggaaaaaaatgtcaattacCCTCGAAAGTAAAAAAACAGGACGGTACAGA
CCCAGCTAATCAGCAGGAAATCCTCAAAGAATGGAAGGAATACTTTAGTG
CTCTCCTCAACAACAGATCAACTACACCAGCTGCTGATCCCACACCTGCT
GAAATTGATCTTCCAATAAATACTGATCCCCCGACACTTAATGAAACTAT
CAAAGCcataaaatctctaaaaagaaacaaatcaCCTGGACTGGACTTTG
GAATCACTCCAGAAGCTCTTCTTGACGGAGGCGATGGAATGGCTTCCATT
GTCCATGATTTTTGCCACGAAGTTTACGTTAACAAAGTTCCTCCTAAACA
ATGGATCACCAATTTAATTATTCCTGTCCCTAAAAAGGGAGACCTATCTT
TAATGAATAATTACAGAGGTATAACACTTATGTCAATCTGTGCTAAAGTC
TACAACAAACTCCTACTAAACAGAATATACGATATCGTCGATCGTAGACT
TCGTCCAAACCAAGCTGGTTTTCGAGCCGGTAGAAGTTGCGCCCAACAAG
TCCATATACTGAGACGCATTATTGAAGGTTGCACAATTAAACAGCTCCCA
CTTGTTGCTACCTTTATCGACTTTCGCAAGGCTTTCGATTCGATAAATCG
AGATTCCATGTTCAAGATTC Coding sequence (CDS) from alignment at scaffold_258:299808..301227 >TCONS_00055766 ID=TCONS_00055766|Name=TCONS_00055766|organism=Clytia hemisphaerica|type=CDS|length=1419bp|location=Sequence derived from alignment at scaffold_258:299808..301227 (Clytia hemisphaerica)
CATGAATTCGCCCCGAGTAGTATTGGTACCACCCTTATGCATGATGAAAC
AAATGATAATGGCGAGAGACTCATAGAGTATTGTCTAGGATCAAACCTTA
CCCACGCACAATCACACTTTCCTCAACCAGTCTCGCGGTTTTGGACTTGG
CGGCATCCTTCTGGCACCCACGCCCAGCTCGACCACATACTTATCAGCAG
TAAATGGAGAAACTCTCTTAGAAACTGTAGAGCTTACAACACTGTAGAGG
TCGACTCTGATCATCGAATCCTCAGTGCTACTGTTAAAGTCAGCCTTAGA
ACGACAAAAGGAAATTCCCTCGCAAGACAAAAATACAACTGGAAGAAACT
TGAGTCCTTGGAAGTCAAAAGAGAGTTTCAACTGAAACTCTCAAATCGTT
TCCGAAACATTCCTCAAATAGAAACAATCACAGAACGCTACGATGCTTTC
GAGAAAACGACCTGTGAAGTAGCCCTGGAAGTTCTCGGAAAACGTGTACC
AACAGGTTTGCCCTCCTGGGTCTCCAAAGAAACCGAGGATATGAGGAAAC
TTCGGGATGCTGCAAAGAAAAGAGACATCATCTCTAAATCTACTGTCTCA
AGGAGACAACTGAAAGACCTAAATGTCTCATTGAATCAATCATATAAAGA
TGACGAACGGAAACATCTTGAAAAGCAACTCGCTGAACTTACAGAGGCTA
GCAACAAGAAAGAAGTTAACAAAGTCTGGTCCATAATCAACGAGTTATct
ggaaaaaaatgtcaattacCCTCGAAAGTAAAAAAACAGGACGGTACAGA
CCCAGCTAATCAGCAGGAAATCCTCAAAGAATGGAAGGAATACTTTAGTG
CTCTCCTCAACAACAGATCAACTACACCAGCTGCTGATCCCACACCTGCT
GAAATTGATCTTCCAATAAATACTGATCCCCCGACACTTAATGAAACTAT
CAAAGCcataaaatctctaaaaagaaacaaatcaCCTGGACTGGACTTTG
GAATCACTCCAGAAGCTCTTCTTGACGGAGGCGATGGAATGGCTTCCATT
GTCCATGATTTTTGCCACGAAGTTTACGTTAACAAAGTTCCTCCTAAACA
ATGGATCACCAATTTAATTATTCCTGTCCCTAAAAAGGGAGACCTATCTT
TAATGAATAATTACAGAGGTATAACACTTATGTCAATCTGTGCTAAAGTC
TACAACAAACTCCTACTAAACAGAATATACGATATCGTCGATCGTAGACT
TCGTCCAAACCAAGCTGGTTTTCGAGCCGGTAGAAGTTGCGCCCAACAAG
TCCATATACTGAGACGCATTATTGAAGGTTGCACAATTAAACAGCTCCCA
CTTGTTGCTACCTTTATCGACTTTCGCAAGGCTTTCGATTCGATAAATCG
AGATTCCATGTTCAAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055766-exon-scaffold_258-1491911889:299808..301227 | TCONS_00055766-exon-scaffold_258-1491911889:299808..301227 | Clytia hemisphaerica | exon |
| TCONS_00055766-exon-scaffold_258-1510915933:299808..301227 | TCONS_00055766-exon-scaffold_258-1510915933:299808..301227 | Clytia hemisphaerica | exon |
| TCONS_00055766-exon-scaffold_258-1575043694:299808..301227 | TCONS_00055766-exon-scaffold_258-1575043694:299808..301227 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:299808..301227 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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