TCONS_00055754 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055754
Unique NameTCONS_00055754
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055754 ID=TCONS_00055754|Name=TCONS_00055754|organism=Clytia hemisphaerica|type=transcript|length=782bp
atccaggcactaatcgaacgcaatcgaatcaatcgagaaaatcgcggtaa
tattcgattggcattcgattgcgttcggcaatcgaatttcaatcattcga
ttgcgttattgcgttcaattgattcggcgttcgattcgttcgattgacat
cgtctggttaTAAACGTGTTCTTGGACCTGACTCCTTGAGGCCTGAGCCT
GATTGGTCAGGGTCTCAGTTAACTGCGATGAAAAAAATGGATTTAATCCC
CAGCCACAATGAGGATGAGTAGTTTGCTCGCTCCCTCTAGCTGgttgatt
attttcaaaattttcatggcAGTTGAGGTGAGGGGAATTAATGAACTGGT
TTACCATCCGCTACCGCTCAAGttcattatttctttaaaaactcattatt
ttcttctttttttcatgcCAAACTATCCAAAACACTCCTCAAAGTAAACT
AAAATAACATCTTCGCTACGCAAAACCATGTTTTCGGGCGTTTTTTAAAG
CAGTGGGTGGTTACAAGGGTGTTTTAAAAACTTACATTTTAGACGCAtct
caatttttgaatttttgtgcaTGTGATTTTGATTCTGAAAGTGAAAGCAA
CTGTTTCACAGTGGAATTCAAGTTTAGAAGCTACCAGGTagaaataatga
ataatgaagtTTTGCTGCATCAAATATTTATGTGACGGTAAACCGGTTCA
TTAATTCTTATCGCCAGAGTGAATGAATTAGTccctctttttaaaaaaag
atttgatggACTTGTCAGCTCTAAGAACAGGC
Run BLAST on NCBI

transcript from alignment at scaffold_258:167773..168554

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055754 ID=TCONS_00055754|Name=TCONS_00055754|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at scaffold_258:167773..168554 (Clytia hemisphaerica)
GCCTGTTCTTAGAGCTGACAAGTccatcaaatctttttttaaaaagaggg
ACTAATTCATTCACTCTGGCGATAAGAATTAATGAACCGGTTTACCGTCA
CATAAATATTTGATGCAGCAAAacttcattattcattatttctACCTGGT
AGCTTCTAAACTTGAATTCCACTGTGAAACAGTTGCTTTCACTTTCAGAA
TCAAAATCACAtgcacaaaaattcaaaaattgagaTGCGTCTAAAATGTA
AGTTTTTAAAACACCCTTGTAACCACCCACTGCTTTAAAAAACGCCCGAA
AACATGGTTTTGCGTAGCGAAGATGTTATTTTAGTTTACTTTGAGGAGTG
TTTTGGATAGTTTGgcatgaaaaaaagaagaaaataatgagtttttaaag
aaataatgaaCTTGAGCGGTAGCGGATGGTAAACCAGTTCATTAATTCCC
CTCACCTCAACTgccatgaaaattttgaaaataatcaacCAGCTAGAGGG
AGCGAGCAAACTACTCATCCTCATTGTGGCTGGGGATTAAATCCATTTTT
TTCATCGCAGTTAACTGAGACCCTGACCAATCAGGCTCAGGCCTCAAGGA
GTCAGGTCCAAGAACACGTTTAtaaccagacgatgtcaatcgaacgaatc
gaacgccgaatcaattgaacgcaataacgcaatcgaatgattgaaattcg
attgccgaacgcaatcgaatgccaatcgaatattaccgcgattttctcga
ttgattcgattgcgttcgattagtgcctggat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035097XLOC_035097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055754-exon-scaffold_258-1491911889:167773..168554TCONS_00055754-exon-scaffold_258-1491911889:167773..168554Clytia hemisphaericaexon
TCONS_00055754-exon-scaffold_258-1510915933:167773..168554TCONS_00055754-exon-scaffold_258-1510915933:167773..168554Clytia hemisphaericaexon
TCONS_00055754-exon-scaffold_258-1575043694:167773..168554TCONS_00055754-exon-scaffold_258-1575043694:167773..168554Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:167773..168554 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.95863	1.75095	3.21502	3.25199	19.3713	13.3188	6.93385	8.19752	3.8489	4.79328	5.00721	3.69334	2.91019	1.88162	2.75079	3.05173	1.89959	2.72512	2.0573	1.87212	3.2925	2.63574	0.786852	1.35537	9.0849	9.61121	3.35829	1.99334	2.03726	1.46222
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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