TCONS_00055740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055740
Unique NameTCONS_00055740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055740 ID=TCONS_00055740|Name=TCONS_00055740|organism=Clytia hemisphaerica|type=transcript|length=554bp
tgttttgccaGCTCCAAGTATGTGGATACGATCTTGGTGTCAGCATCACC
TTCACAAATATGGACGCTTTGGCCATCACGTGTTAGATACTTGGCAAACA
GCGCTATCAGTTGTTCTTTGTTCTTCCAATTAGAAAGAAAACGTTCCCGG
TTGTATTTTGATTCATTATCTTCCAAAATGTCAACGTCAGGACAGGGCCC
ATGTGATTTCTTCCTCCGTTCGTGCTCATTGGATTTTATCGAAGTGGGGT
CATTGTAGCCATCGAAAACGACATGACACGTACCATAGTTGGCTCTCACA
TAGCTGACATGATATGAGGCAATTTCCTTGAATGTGATGCCTTTCTTCCA
ACTGACTCTATGTATCAGAGCACCACCATCAAGAACAAACTGGCCACTTG
ACAAACGATCACAAGATTTCTGTTCTGGTAAAATTAGCTTTCTCAGTGAT
GCTTTCTTTGACAGGTTTTCTCATCAATCCTCTTTTAAAGAGACTTTCCG
GAAACTGTGTCAGCTCGTACTCAAAATACTTTTCCACGTCTTCTTCGCTT
TGAG
Run BLAST on NCBI

transcript from alignment at scaffold_258:4267..4820

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055740 ID=TCONS_00055740|Name=TCONS_00055740|organism=Clytia hemisphaerica|type=transcript|length=554bp|location=Sequence derived from alignment at scaffold_258:4267..4820 (Clytia hemisphaerica)
CTCAAAGCGAAGAAGACGTGGAAAAGTATTTTGAGTACGAGCTGACACAG
TTTCCGGAAAGTCTCTTTAAAAGAGGATTGATGAGAAAACCTGTCAAAGA
AAGCATCACTGAGAAAGCTAATTTTACCAGAACAGAAATCTTGTGATCGT
TTGTCAAGTGGCCAGTTTGTTCTTGATGGTGGTGCTCTGATACATAGAGT
CAGTTGGAAGAAAGGCATCACATTCAAGGAAATTGCCTCATATCATGTCA
GCTATGTGAGAGCCAACTATGGTACGTGTCATGTCGTTTTCGATGGCTAC
AATGACCCCACTTCGATAAAATCCAATGAGCACGAACGGAGGAAGAAATC
ACATGGGCCCTGTCCTGACGTTGACATTTTGGAAGATAATGAATCAAAAT
ACAACCGGGAACGTTTTCTTTCTAATTGGAAGAACAAAGAACAACTGATA
GCGCTGTTTGCCAAGTATCTAACACGTGATGGCCAAAGCGTCCATATTTG
TGAAGGTGATGCTGACACCAAGATCGTATCCACATACTTGGAGCtggcaa
aaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035083XLOC_035083Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055740-exon-scaffold_258-1491911889:4267..4820TCONS_00055740-exon-scaffold_258-1491911889:4267..4820Clytia hemisphaericaexon
TCONS_00055740-exon-scaffold_258-1510915933:4267..4820TCONS_00055740-exon-scaffold_258-1510915933:4267..4820Clytia hemisphaericaexon
TCONS_00055740-exon-scaffold_258-1575043694:4267..4820TCONS_00055740-exon-scaffold_258-1575043694:4267..4820Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:4267..4820 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.209805	0.268771	0.116434	0	0.277355	0.328754	0.661047	1.73282	0.259969	0.415943	0.937662	0.869826	0.725785	0.852305	0.32061	0.343502	0.161819	0.553872	0	0.506558	0.198852	1.25363	0.47163	0.321585	0.66245	0.492684	0.846035	0.451456	0.114138	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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