TCONS_00055736 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055736
Unique NameTCONS_00055736
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055736 ID=TCONS_00055736|Name=TCONS_00055736|organism=Clytia hemisphaerica|type=transcript|length=836bp
CAAAAGGCATTTTGGAAATGGCAATTTTCGAGGGTAGGATTTCCTTTGAC
GAAATGTTAAACTACAGTCTTGGGTTTTCATGACTTTTGGATCAAAAAGG
GCTTCAAATCCTGGGGTCGTCtcgaacttttcaaaaccaaaGTTTGGGAA
CTGGCCTGTAGTTGTGCCCTTCCCCTAAAGCAAATTACAtgcctttctca
cagacccagtaggaccCCTGTACACTGAATAATAGGCCAAAAATCGTCCC
GGTAGaaagaaaaacttcatttttaatTATTATAACTTCATTATTAagtt
aaaatcttaaaaattcttaatttcagCGGAAGTGTCCAACAACTGAATGT
CCGTTCTGTGGCAAGGaacaaacaaacttaaaaaGTCATGCCATGAGAAA
ACATGGCTTAACAGAAGAGAACGCTCTGGCAATGAAAAGCCAATATAACC
TCTACAATGAACGCATCATAAAGAGCGACGATGATCGTAAATCGAAGAGG
CGAATTCACCAACGAAGAACCTGCCCTGTACTAGGTTGCTCGAAAACACC
TAAAAGATTAAACAATCACTTGAGACAAACTcacaaaataaagaagaaag
aaCTATTTGACCGTCTCATGAAAAAGAGTGAACTTGTGGAAAATTTCGAC
AGTGAAGACAGTGAAGTTGAAAATGAGGATGAATCGGGGTCAGAGGAGGA
GTCCGATTATGTGGccttcaaaaatattattgagAAAGAGAGAGACTATC
TCGCCACTATTGACTCGAACTCTGACTCCGACTCAGATTGTGACTGGTTA
CTTGAAACCACGAGAAGATGGAATGCTAAGAAAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_258:337323..338158-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055736 ID=TCONS_00055736|Name=TCONS_00055736|organism=Clytia hemisphaerica|type=transcript|length=836bp|location=Sequence derived from alignment at scaffold_258:337323..338158- (Clytia hemisphaerica)
CAAAAGGCATTTTGGAAATGGCAATTTTCGAGGGTAGGATTTCCTTTGAC
GAAATGTTAAACTACAGTCTTGGGTTTTCATGACTTTTGGATCAAAAAGG
GCTTCAAATCCTGGGGTCGTCTCGAACTTTTCAAAACCAAAGTTTGGGAA
CTGGCCTGTAGTTGTGCCCTTCCCCTAAAGCAAATTACATGCCTTTCTCA
CAGACCCAGTAGGACCCCTGTACACTGAATAATAGGCCAAAAATCGTCCC
GGTAGAAAGAAAAACTTCATTTTTAATTATTATAACTTCATTATTAAGTT
AAAATCTTAAAAATTCTTAATTTCAGCGGAAGTGTCCAACAACTGAATGT
CCGTTCTGTGGCAAGGAACAAACAAACTTAAAAAGTCATGCCATGAGAAA
ACATGGCTTAACAGAAGAGAACGCTCTGGCAATGAAAAGCCAATATAACC
TCTACAATGAACGCATCATAAAGAGCGACGATGATCGTAAATCGAAGAGG
CGAATTCACCAACGAAGAACCTGCCCTGTACTAGGTTGCTCGAAAACACC
TAAAAGATTAAACAATCACTTGAGACAAACTCACAAAATAAAGAAGAAAG
AACTATTTGACCGTCTCATGAAAAAGAGTGAACTTGTGGAAAATTTCGAC
AGTGAAGACAGTGAAGTTGAAAATGAGGATGAATCGGGGTCAGAGGAGGA
GTCCGATTATGTGGCCTTCAAAAATATTATTGAGAAAGAGAGAGACTATC
TCGCCACTATTGACTCGAACTCTGACTCCGACTCAGATTGTGACTGGTTA
CTTGAAACCACGAGAAGATGGAATGCTAAGAAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035082XLOC_035082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055736-exon-scaffold_258-1575043694:337323..338158TCONS_00055736-exon-scaffold_258-1575043694:337323..338158Clytia hemisphaericaexon
TCONS_00055736-exon-scaffold_258-1510915933:337323..338158TCONS_00055736-exon-scaffold_258-1510915933:337323..338158Clytia hemisphaericaexon
TCONS_00055736-exon-scaffold_258-1491911889:337323..338158TCONS_00055736-exon-scaffold_258-1491911889:337323..338158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:337323..338158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.128133	0.0626791	0.690884	0.818919	0	0.462472	0	0	0	0.161221	0.0801426	0.2572	0	0.0723028	0	0	0	0	0.247667	0	0	0	0.275024	0.490905	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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