TCONS_00055734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055734
Unique NameTCONS_00055734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055734 ID=TCONS_00055734|Name=TCONS_00055734|organism=Clytia hemisphaerica|type=transcript|length=1108bp
GTCCTATGACAAGGGATGTCGTAAAGATTCTCGGAAAAGCATCAGATGAG
TGTGAAAGTTTTCTCCCATCAAGAACTGAATTTCATTTGGTTAGAGACTG
GTTATTGGCCGCCATCGCTCTTGCTAATGCTCACAgATCCGGAGTCCCAG
CAAACATCACCTTAAAGGAATATGAAAAAGTAATATCTGAAGACGACTAC
AAAATTATCAAAGTTCGTTCTCATAAAACCTTCTTCAAACACGGTTATGC
TCACGTCACATTATCAAATCTTGTTTTCTAACACCTAAAGCTTTACAAGA
AGTACATTAGACCTACGTTCGCTCGTGACAAAGAGTGTACAAATCTTTTC
ATAAGCCATAGCGGAAGAGCAATGGAGTCAGGGGCGGTGAGCAGACGTAT
CAACAAAATTTGGCAAGAGTCAGGTGTTTATAAAGACAGACCGGAACCAC
CAAAACGCAATGTATGTGACAACATTGGTTCATGAAAAACGGCCAAATGA
CAAGCAGGCCGTAGCTGATTTGCTTTCACATAACGTCAGCACAGCTGAAA
ACATATATAGACAGAAAAAGATGATCCATCAAGCTGTGCGTGCTGCGGAA
GTAATCCAGAGTGTTACAAATGCAAACTCATCAAACGAAAAAAATCCCGA
AATTTCCTGCAACGaagttgaaaagaaaaagagcACAGAAACCGATTGTA
CCTCCACTCTTCAATCCAACGATTGTGACAGTATTCATTTGGAGACTTCA
AATAAAagATCGAAGGAAGATGCTTCCGAAGCATCCAATGATGACTCTGA
TTCAGACATTGATGACAGATCTGTGGTTGCCCCGTCTTCAACCGTCTCAT
CAGGAAAAGATAAACTCTTTACTGTGGTAGAAAGTCATGAATTATACAAT
ATGGCTATGGATTTGATTCGAAACCCACCTATCAACGAAGAAAGGATCaa
tgaagttttgaaaaaaactagTTGTGGAAAACAATTTCTGCTGAAGTTTA
ATACTTTTCAGttggaaaataaaatgaaatatggCAGGAGATTGTTCAGA
ATGGCTGACTCTCGAGTAATTAAGCTTAAGAGCATCATAAAGTAGTTTTA
ACGGTAGA
Run BLAST on NCBI

protein sequence of TCONS_00055734-protein

>TCONS_00055734-protein ID=TCONS_00055734-protein|Name=TCONS_00055734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MYVTTLVHEKRPNDKQAVADLLSHNVSTAENIYRQKKMIHQAVRAAEVIQ
SVTNANSSNEKNPEISCNEVEKKKSTETDCTSTLQSNDCDSIHLETSNKR
SKEDASEASNDDSDSDIDDRSVVAPSSTVSSGKDKLFTVVESHELYNMAM
DLIRNPPINEERINEVLKKTSCGKQFLLKFNTFQLENKMKYGRRLFRMAD
SRVIKLKSIIK
Run BLAST on NCBI

transcript from alignment at scaffold_258:240831..242883-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055734 ID=TCONS_00055734|Name=TCONS_00055734|organism=Clytia hemisphaerica|type=transcript|length=2053bp|location=Sequence derived from alignment at scaffold_258:240831..242883- (Clytia hemisphaerica)
GTCCTATGACAAGGGATGTCGTAAAGATTCTCGGAAAAGCATCAGATGAG
TGTGAAAGTTTTCTCCCATCAAGAACTGAATTTCATTTGGTTAGAGACTG
GTTATTGGCCGCCATCGCTCTTGCTAATGCTCACAGGTATATTCAAAATA
TTTCATCCCCAGCTCACCATCCAATGTTATAAAAAAACCGTCAACTTTTT
CGCTAGATATTTAAAAAAAAAATACAAAAACATACTGGNTCCCAACTCAC
CATCCAATGTTATAAAAAAACCGTCAACTTTTTCGCTAGATATTTTAAAG
AAAAATACAAAAACATACTGTAACATGTTATTGTTCCTAGACATTACATA
TCCAATTATGTGAAGAATCCTATACTTAACTTAAAAGTTCACTTATTGTA
TTATCCTTAGATCCGGAGTCCCAGCAAACATCACCTTAAAGGAATATGAA
AAAGTAATATCTGAAGACGACTACAAAATTATCAAAGTTCGTTCTCATAA
AACCTTCTTCAAACACGGTTATGCTCACGTCACATTATCAAATCTTGTTT
TCTAACACCTAAAGCTTTACAAGAAGTACATTAGACCTACGTTCGCTCGT
GACAAAGAGTGTACAAATCTTTTCATAAGCCATAGCGGAAGAGCAATGGA
GTCAGGGGCGGTGAGCAGACGTATCAACAAAATTTGGCAAGAGTCAGGTG
TTTATAAAGACAGACCGGAACCACCAAAACGCAATGTATGTGACAACATT
GGTTCATGAAAAACGGCCAAATGACAAGCAGGCCGTAGCTGATTTGCTTT
CACATAACGTCAGCACAGCTGAAAACATATATAGACAGAAAAAGATGATC
CATCAAGCTGTGCGTGCTGCGGAAGTAATCCAGAGTGTTACAAATGCAAA
CTCATCAAACGAAAAGTTAGTCACTTATCTATCTGCAAGTTAATATACTG
AATTTGACTTGGGCATTGAAGCTTTTTAAATAATAAAATGCTTTATGCTT
TAAAAGACTTGAAAAATGCCGATATTTGGTATCTATTTTTAACGCACTAC
AATACAATACAATACATTTTTATAAAATTAGCATCTAAAATGGTTAGTGT
TCGTCGTGGGCGTCAAATGGTTCGACGCGTGGATTTAGACAAAAATTCGT
TCGACACGCAGGATAGAAAATTTGACTTGAAAGTTCTAAACATGATAAAA
TGTGCCCAAATTTGTAAAATTTTGTAATCTACTTCATGATTTTATATTAA
TTTTATTTTGCTTTACGAAAAAAGTTCGTAGTGAAGACAAGAAAGGACTG
AAATATAAACGCAGGCGCCTTAGAGTTAAACACGGGCGTCAAAGCATTAG
TCTAACGCTTCGACAAGATTTCTTCTTTCTGCTTCAGCAGCCCCTGTTAT
TTAATGATATATTTTTACTCCTGTTTATAGAAATCCCGAAATTTCCTGCA
ACGAAGTTGAAAAGAAAAAGAGCACAGAAACCGATTGTACCTCCACTCTT
CAATCCAACGATTGTGACAGTATTCATTTGGAGACTTCAAATAAAAGGTT
TTGTAATTTTCATTTAAACAACTACACGATCGCTTGATTGAAACTCCCAT
TTGAGTGTTTTGAATTTTTATTAAGCTTGACTTGGCCACGATCCATCTTT
CCATAGGGAGAGAAAAAGAAAAACAGTTTTAAAAAATTCCATCTCCTTTA
CAGATCGAAGGAAGATGCTTCCGAAGCATCCAATGATGACTCTGATTCAG
ACATTGATGACAGATCTGTGGTTGCCCCGTCTTCAACCGTCTCATCAGGA
AAAGATAAACTCTTTACTGTGGTAGAAAGTCATGAATTATACAATATGGC
TATGGATTTGATTCGAAACCCACCTATCAACGAAGAAAGGATCAATGAAG
TTTTGAAAAAAACTAGTTGTGGAAAACAATTTCTGCTGAAGTTTAATACT
TTTCAGTTGGAAAATAAAATGAAATATGGCAGGAGATTGTTCAGAATGGC
TGACTCTCGAGTAATTAAGCTTAAGAGCATCATAAAGTAGTTTTAACGGT
AGA

Coding sequence (CDS) from alignment at scaffold_258:240831..242883-

>TCONS_00055734 ID=TCONS_00055734|Name=TCONS_00055734|organism=Clytia hemisphaerica|type=CDS|length=1908bp|location=Sequence derived from alignment at scaffold_258:240831..242883- (Clytia hemisphaerica)
ATCGAAGGAAGATGCTTCCGAAGCATCCAATGATGACTCTGATTCAGACA
TTGATGACAGATCTGTGGTTGCCCCGTCTTCAACCGTCTCATCAGGAAAA
GATAAACTCTTTACTGTGGTAGAAAGTCATGAATTATACAATATGGCTAT
GGATTTGATTCGAAACCCACCTATCAACGAAGAAAGGATCAATGAAGTTT
TGAAAAAAACTAGTTGTGGAAAACAATTTCTGCTGAAGTTTAATACTTTT
CAGTTGGAAAATAAAATGAAATATGGCAGGAGATTGTTCAGAATGGCTGA
CTCTCGAGTAATTAAGCTTAAGAGCATCATAAAGTAGAAATCCCGAAATT
TCCTGCAACGAAGTTGAAAAGAAAAAGAGCACAGAAACCGATTGTACCTC
CACTCTTCAATCCAACGATTGTGACAGTATTCATTTGGAGACTTCAAATA
AAAGATGTATGTGACAACATTGGTTCATGAAAAACGGCCAAATGACAAGC
AGGCCGTAGCTGATTTGCTTTCACATAACGTCAGCACAGCTGAAAACATA
TATAGACAGAAAAAGATGATCCATCAAGCTGTGCGTGCTGCGGAAGTAAT
CCAGAGTGTTACAAATGCAAACTCATCAAACGAAAAATCGAAGGAAGATG
CTTCCGAAGCATCCAATGATGACTCTGATTCAGACATTGATGACAGATCT
GTGGTTGCCCCGTCTTCAACCGTCTCATCAGGAAAAGATAAACTCTTTAC
TGTGGTAGAAAGTCATGAATTATACAATATGGCTATGGATTTGATTCGAA
ACCCACCTATCAACGAAGAAAGGATCAATGAAGTTTTGAAAAAAACTAGT
TGTGGAAAACAATTTCTGCTGAAGTTTAATACTTTTCAGTTGGAAAATAA
AATGAAATATGGCAGGAGATTGTTCAGAATGGCTGACTCTCGAGTAATTA
AGCTTAAGAGCATCATAAAGTAGAAATCCCGAAATTTCCTGCAACGAAGT
TGAAAAGAAAAAGAGCACAGAAACCGATTGTACCTCCACTCTTCAATCCA
ACGATTGTGACAGTATTCATTTGGAGACTTCAAATAAAAGATGTATGTGA
CAACATTGGTTCATGAAAAACGGCCAAATGACAAGCAGGCCGTAGCTGAT
TTGCTTTCACATAACGTCAGCACAGCTGAAAACATATATAGACAGAAAAA
GATGATCCATCAAGCTGTGCGTGCTGCGGAAGTAATCCAGAGTGTTACAA
ATGCAAACTCATCAAACGAAAAATCGAAGGAAGATGCTTCCGAAGCATCC
AATGATGACTCTGATTCAGACATTGATGACAGATCTGTGGTTGCCCCGTC
TTCAACCGTCTCATCAGGAAAAGATAAACTCTTTACTGTGGTAGAAAGTC
ATGAATTATACAATATGGCTATGGATTTGATTCGAAACCCACCTATCAAC
GAAGAAAGGATCAATGAAGTTTTGAAAAAAACTAGTTGTGGAAAACAATT
TCTGCTGAAGTTTAATACTTTTCAGTTGGAAAATAAAATGAAATATGGCA
GGAGATTGTTCAGAATGGCTGACTCTCGAGTAATTAAGCTTAAGAGCATC
ATAAAGTAGAAATCCCGAAATTTCCTGCAACGAAGTTGAAAAGAAAAAGA
GCACAGAAACCGATTGTACCTCCACTCTTCAATCCAACGATTGTGACAGT
ATTCATTTGGAGACTTCAAATAAAAGATGTATGTGACAACATTGGTTCAT
GAAAAACGGCCAAATGACAAGCAGGCCGTAGCTGATTTGCTTTCACATAA
CGTCAGCACAGCTGAAAACATATATAGACAGAAAAAGATGATCCATCAAG
CTGTGCGTGCTGCGGAAGTAATCCAGAGTGTTACAAATGCAAACTCATCA
AACGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035080XLOC_035080Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055734-proteinTCONS_00055734-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055734-exon-scaffold_258-1575043694:242748..242883TCONS_00055734-exon-scaffold_258-1575043694:242748..242883Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1575043694:241969..242473TCONS_00055734-exon-scaffold_258-1575043694:241969..242473Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1575043694:241337..241453TCONS_00055734-exon-scaffold_258-1575043694:241337..241453Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1575043694:240831..241180TCONS_00055734-exon-scaffold_258-1575043694:240831..241180Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1510915933:242748..242883TCONS_00055734-exon-scaffold_258-1510915933:242748..242883Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1510915933:241969..242473TCONS_00055734-exon-scaffold_258-1510915933:241969..242473Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1510915933:241337..241453TCONS_00055734-exon-scaffold_258-1510915933:241337..241453Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1510915933:240831..241180TCONS_00055734-exon-scaffold_258-1510915933:240831..241180Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1491911889:242748..242883TCONS_00055734-exon-scaffold_258-1491911889:242748..242883Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1491911889:241969..242473TCONS_00055734-exon-scaffold_258-1491911889:241969..242473Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1491911889:241337..241453TCONS_00055734-exon-scaffold_258-1491911889:241337..241453Clytia hemisphaericaexon
TCONS_00055734-exon-scaffold_258-1491911889:240831..241180TCONS_00055734-exon-scaffold_258-1491911889:240831..241180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:240831..242883 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0441652	0.0384832	0	0	17.1937	12.5977	3.39935	6.39215	1.10682	1.19712	0.93005	1.06537	0.256978	0.39341	0.112044	0.072144	0	0.0607296	0.0839013	0	0.0381556	0	0.0452481	0.0411371	0.127111	0.189072	0	0	0	0.0446268
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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