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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055731 ID=TCONS_00055731|Name=TCONS_00055731|organism=Clytia hemisphaerica|type=transcript|length=1097bp
TGCTGTTAATATCAAATCCAGAAACTTCAAGTCAAAttcaattttccttt
aaaataaaagcaaaaggTTCACTCACTTGAACAGCAAGATTCACCCTCAT
TCTAGTTCGTGGTCCCAAAAAAATGTGATCATGTGTCAGCTTGCATAATT
TGCGGTAGCCAGGTGTCAAGCTATTCCTGTTGAGATCGTACTCATAAAGA
GCCTGGATTGTATTCCAAGTCAAATCCTGCCCATTAACAGTCAACttcct
tgttttttttgttacaGCCGGAGTTTTCAAGATTGTTCCTGAGTGTCTTC
AGTAAATGTGGCACGTCACTATAAAAGTATATTTTACGACCAGGAGCATA
ACGATTGTGGGCCCAATAGACTACACCATCAGGGGAAACATTGGTGCCAT
CTTCTAATTTATGCATCTCAAAGAATTTGCGGTTGCAGATGCTCCATCAC
AAACAAAGGCGTAAACATTAAAACCAACCATTTCCATAACACCAACAGCT
TCCCATATGATGGCAAAAAGCTGCTCAGCACTGGCTGAGCGGGTGGCATA
AAACCCGATGGGGAAGttgaaatgattaaaaaatccTCTGACCATAATTG
CCAGAACATGTGTGGCCAGTGGCCTGATCTTCTTTCTGTCCTTTTCTAAT
GACCTTTCCAAGCTGTCAATTTCATCAGAAACTCGCCCAAGCTCAGTGAA
CCCAATTATTGTCCCGGTTGATCTGCTGAATACAAGGCCggatttaattt
tcatttcatcaaaCATTATAGAACATACGCGTTCATGTGTTGGCAGAGTT
GAAATTTTGAGTTCATTACAGTACTTCTCTATTACATCTGGGTTGAAAGA
AGTACCAATTGATGTAAAGCTTGTGTACTGTTGTAGTGTTGAGCGATGAG
GTAGTTGGAGAAAGCCGGTTGCTCTGAGCTGTTCGTAAGTGCCTAGAAAA
AAGATGAGGCATAAAACAATCGTACAATCATAGATTGATTAAGTTAGATA
AATTCATGAACTTTGCACCTTACAGAAAATTTATTCTAAAAAGTTATTGG
ATGATATTGCAATGAAATCAACCTGATACAAAAAGAGTAAATTTTGa Run BLAST on NCBI transcript from alignment at scaffold_258:188506..190127- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055731 ID=TCONS_00055731|Name=TCONS_00055731|organism=Clytia hemisphaerica|type=transcript|length=1622bp|location=Sequence derived from alignment at scaffold_258:188506..190127- (Clytia hemisphaerica)
TGCTGTTAATATCAAATCCAGAAACTTCAAGTCAAATTCAATTTTCCTTT
AAAATAAAAGCAAAAGGTTCACTCACTTGAACAGCAAGATTCACCCTCAT
TCTAGTTCGTGGTCCCAAAAAAATGTGATCATGTGTCAGCTTGCATAATT
TGCGGTAGCCAGGTGTCAAGCTATTCCTGTTGAGATCGTACTCATAAAGA
GCCTGGATTGTATTCCAAGTCAAATCCTGCCCATTAACATGAAAAATAGG
GATAATAATAAAACAATCTTATTCTATATACTCTTAGGTGCCAAATAAAC
GCCCCCTCCCCCCGCTTGTTAATTTTTCAAAAAAATTTCTAGGCCCCCCC
CCCCTGTTTATTAAAATCTAATTTTCCAACCCCCCCCCCCCGTTTATTGA
AATCTAATTTTCCAACCCCCCCCCCCCCCGGGGGGGGGGGGGGTTGGAAA
TTTTTTTGAAAAATTAACAAGCGGGGGGAGGGGGCGTTTATTTGGCACCT
AAGAGTAGTGTACATTTTACTTAAATCTCATATATTAACTTGAGCCCTTG
TATTGTAAAATTATTTAGCAAATTAATAAAATATTTAAAAAATCTAGAAT
CTCAAATAAAACTTGATTACTCAGAAGATGAATAGGACAAAGAGGAAAGA
TTTTACTACTTAAATACACCAAATCATGTTACTAAAAGATTACATTATTC
GAGCTTGACAATATGAAAGTCCTCTCTAAAGTAGCCCCTGCTTATAAAAA
CTATTATTCTTACAGTCAACTTCCTTGTTTTTTTTGTTACAGCCGGAGTT
TTCAAGATTGTTCCTGAGTGTCTTCAGTAAATGTGGCACGTCACTATAAA
AGTATATTTTACGACCAGGAGCATAACGATTGTGGGCCCAATAGACTACA
CCATCAGGGGAAACATTGGTGCCATCTTCTAATTTATGCATCTCAAAGAA
TTTGCGGTTGCAGATGCTCCATCACAAACAAAGGCGTAAACATTAAAACC
AACCATTTCCATAACACCAACAGCTTCCCATATGATGGCAAAAAGCTGCT
CAGCACTGGCTGAGCGGGTGGCATAAAACCCGATGGGGAAGTTGAAATGA
TTAAAAAATCCTCTGACCATAATTGCCAGAACATGTGTGGCCAGTGGCCT
GATCTTCTTTCTGTCCTTTTCTAATGACCTTTCCAAGCTGTCAATTTCAT
CAGAAACTCGCCCAAGCTCAGTGAACCCAATTATTGTCCCGGTTGATCTG
CTGAATACAAGGCCGGATTTAATTTTCATTTCATCAAACATTATAGAACA
TACGCGTTCATGTGTTGGCAGAGTTGAAATTTTGAGTTCATTACAGTACT
TCTCTATTACATCTGGGTTGAAAGAAGTACCAATTGATGTAAAGCTTGTG
TACTGTTGTAGTGTTGAGCGATGAGGTAGTTGGAGAAAGCCGGTTGCTCT
GAGCTGTTCGTAAGTGCCTAGAAAAAAGATGAGGCATAAAACAATCGTAC
AATCATAGATTGATTAAGTTAGATAAATTCATGAACTTTGCACCTTACAG
AAAATTTATTCTAAAAAGTTATTGGATGATATTGCAATGAAATCAACCTG
ATACAAAAAGAGTAAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055731-exon-scaffold_258-1575043694:189890..190127 | TCONS_00055731-exon-scaffold_258-1575043694:189890..190127 | Clytia hemisphaerica | exon |
| TCONS_00055731-exon-scaffold_258-1575043694:188506..189364 | TCONS_00055731-exon-scaffold_258-1575043694:188506..189364 | Clytia hemisphaerica | exon |
| TCONS_00055731-exon-scaffold_258-1510915933:189890..190127 | TCONS_00055731-exon-scaffold_258-1510915933:189890..190127 | Clytia hemisphaerica | exon |
| TCONS_00055731-exon-scaffold_258-1510915933:188506..189364 | TCONS_00055731-exon-scaffold_258-1510915933:188506..189364 | Clytia hemisphaerica | exon |
| TCONS_00055731-exon-scaffold_258-1491911889:189890..190127 | TCONS_00055731-exon-scaffold_258-1491911889:189890..190127 | Clytia hemisphaerica | exon |
| TCONS_00055731-exon-scaffold_258-1491911889:188506..189364 | TCONS_00055731-exon-scaffold_258-1491911889:188506..189364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_258 | supercontig | scaffold_258:188506..190127 - |
Blast
The following BLAST results are available for this feature:
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