TCONS_00055728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055728
Unique NameTCONS_00055728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055728 ID=TCONS_00055728|Name=TCONS_00055728|organism=Clytia hemisphaerica|type=transcript|length=1503bp
TTTTGATATCTGTCGGGATTGCATGTTAATAATGTTTTAACTTTTCCATT
AAAGAggttttttcaccattttcatGATATTTGTATTTTTACAGCTTTTG
TAGCTTATATCATCATAATGgcctcaaaaaaaaagtttaaatatgatata
ccaaaaataaaaaatatgtgtcAAATATGTTTTATTACATCTTCGAAAAA
ATTCAACATAGAGAGACATATGGACACAGTTCATGCTTCATTAATGTCAC
AAGATGTGAAAAGTAATACTGATAATGCAAAAAGCAACCTTGATATTTCC
ATCAATGATTATGATGGTGATTGCAATAATGATAAATTTAATGAAGAGCA
AACAAATGACTCATTGGATGAACAATCTGATGTGTATGATGCATCCCATT
CACATTCATCCAAAGAAACTGATATATTGGAAAACAGTCATGACACAGAT
ATGTTCCAAAACAAGGATGGAGAAGGATTTCATTTGAGCGCAAAGGATTT
attacaaaaaatgaaagaaagtatGCTAGCTTCAAAGGCAGCAGACTCAG
ATTCTGATATTTCTGATTCTACCTCTGATGTCACTACCAGTGAAAGTGAA
TCCAGTGATGATGATACTCATTCAGACAGTgatctttcagattatgaaga
TGATTGGCTCTTTGATGAGTCACCAGGACATTCAAGGCTAACAAAGAAAG
ATCACGCTGCTATAATACTTGGCCTTGCTTTGAGGCATAACTTGTCCAAC
GAGTGTTTAAAGGATATTTTATTTGCTCTTAAACTTCATTTGCCTGATTC
TAATCGAAGTTTCTTGAATCAATACAAAGTGAAAGCTAGTATTTCTGGGA
TGAGCAGTACACTCAAATTTATCGAATACTGTGAGAAATGCTTTGCATTA
TGGCCTGAAGATGAAAGTGTTTCTAAATGTCCAAATACTTCCTGCTCTGG
CCAGCGATACAGAGGAAACCCATTGAAGAAGGTCAAAAAGAGTTTTATTT
TGACATCCTGCTTATTAAAGGAACAACTTAAAGCTATTCTTGATAGTAAG
TTTAGACTGGCAAGCAGAAGCTTTTTtaaatacatcagaaaaatgaagat
gttcTATGGTACTAGCTAGACAATTGAATTGAactatattttattatttt
ttcatgcATACATAATTTAATCCTACTCTAACTCATTACTAACCTTAcgt
cattaaactcactctgtgTGTTGTTCTAATCAATCTTCAATATTGTTGAT
TTCAAGGAGATGgaatgtgggaaaaagttcttAATGTAATAAAATCAAGG
GAAAGTAACAATGGGGACTGTATAACAGATGTGACTGATGGAAAAAGATA
TAGGGAGCTCTGTCAGTCTGGTGGTGTACTTCATGGAACTGAAAATCTAA
CTATAATCTTTAATACTGATGGTGTTGCCTTGTACAAATCATCGAGAATA
GAAATATGGCCTGTGTATGTTGCCATAAATGAAATACCAGCCAAAGAAAG
GTG
Run BLAST on NCBI

transcript from alignment at scaffold_258:270139..272216+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055728 ID=TCONS_00055728|Name=TCONS_00055728|organism=Clytia hemisphaerica|type=transcript|length=2078bp|location=Sequence derived from alignment at scaffold_258:270139..272216+ (Clytia hemisphaerica)
TTTTGATATCTGTCGGGATTGCATGTTAATAATGTTTTAACTTTTCCATT
AAAGAggttttttcaccattttcatGATATTTGTATTTTTACAGCTTTTG
TAGCTTATATCATCATAATGgcctcaaaaaaaaagtttaaatatgatata
ccaaaaataaaaaatatgtgtcAAATATGTTTTATTACATCTTCGAAAAA
ATTCAACATAGAGAGACATATGGACACAGTTCATGCTTCATTAATGTCAC
AAGATGTGAAAAGTAATACTGATAATGCAAAAAGCAACCTTGATATTTCC
ATCAATGATTATGATGGTGATTGCAATAATGATAAATTTAATGAAGAGCA
AACAAATGACTCATTGGATGAACAATCTGATGTGTATGATGCATCCCATT
CACATTCATCCAAAGAAACTGATATATTGGAAAACAGTCATGACACAGAT
ATGTTCCAAAACAAGGTCATTATTATAAAAACTCTACACTGATTCCTTAC
AACCTCTAAAGAATTGTGTGTACTTTCTATGATAATTTAAACCTTTACAG
CCATTTTTCTGAATCTCTTTGTTTTTGTGTTAGGATGGAGAAGGATTTCA
TTTGAGCGCAAAGGATTTattacaaaaaatgaaagaaagtatGCTAGCTT
CAAAGGCAGCAGACTCAGGTTAATTTTTTTGATCATATAACTCTCCTTTT
TTTCACAGGTCCCGTACTTTAACAACTTCTGTTTTGTAAATATATGTTAC
CTACAGACTACAGTGGGTAGAAGAAAATCTCGGCTGTAGGTTTTTCTGGG
TTTTTAAAGCGTTAAGATAACATTTTTATAAGGAAATTTTCCTACAATAA
TAATGGAATGCTAATTTTCTTTAATATTTAGATTCTGATATTTCTGATTC
TACCTCTGATGTCACTACCAGTGAAAGTGAATCCAGTGATGATGATACTC
ATTCAGACAGTgatctttcagattatgaagaTGATTGGCTCTTTGATGAG
TCACCAGGACATTCAAGGCTAACAAAGAAAGATCACGCTGCTATAATACT
TGGCCTTGCTTTGAGGCATAACTTGTCCAACGAGTGTTTAAAGGATATTT
TATTTGCTCTTAAACTTCATTTGCCTGATTCTAATCGAAGTTTCTTGAAT
CAATACAAAGTGAAAGCTAGTATTTCTGGGATGAGCAGTACACTCAAATT
TATCGAATACTGTGAGAAATGCTTTGCATTATGGCCTGAAGATGAAAGTG
TTTCTAAATGTCCAAATACTTCCTGCTCTGGGTAGGTGtcaaagaacttt
ttgaaaaacagtttTATTTACATTAAATCATGTCTGGTTTCTCTTTTGTT
TAATAAATGCAAGCtttgaattcaaacattttTACAATATAGTTTCATCT
TTTTAGCCAGCGATACAGAGGAAACCCATTGAAGAAGGTCAAAAAGAGTT
TTATTTTGACATCCTGCTTATTAAAGGAACAACTTAAAGCTATTCTTGAT
AGTAAGTTTAGACTGGCAAGCAGAAGCTTTTTtaaatacatcagaaaaat
gaagatgttcTATGGTACTAGCTAGACAATTGAATTGAactatattttat
tattttttcatgcATACATAATTTAATCCTACTCTAACTCATTACTAACC
TTAcgtcattaaactcactctgtgTGTTGTTCTAATCAATCTTCAATATT
GTTGATTTCAAGGAGATGgaatgtgggaaaaagttcttAATGTAATAAAA
TCAAGGGAAAGTAACAATGGGGACTGTATAACAGATGTGACTGATGGAAA
AAGGTATAAAAGCtgtttctttttatcattttatccaAATAATAGCTACA
AAGTGgaagtgagaaaaaaaaaatagacgTTTTGACCTAAATGTCATTaa
ataaatttgtgtgtttttttagATATAGGGAGCTCTGTCAGTCTGGTGGT
GTACTTCATGGAACTGAAAATCTAACTATAATCTTTAATACTGATGGTGT
TGCCTTGTACAAATCATCGAGAATAGAAATATGGCCTGTGTATGTTGCCA
TAAATGAAATACCAGCCAAAGAAAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035076XLOC_035076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055728-exon-scaffold_258-1491911889:270139..270603TCONS_00055728-exon-scaffold_258-1491911889:270139..270603Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1510915933:270139..270603TCONS_00055728-exon-scaffold_258-1510915933:270139..270603Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1575043694:270139..270603TCONS_00055728-exon-scaffold_258-1575043694:270139..270603Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1491911889:270722..270806TCONS_00055728-exon-scaffold_258-1491911889:270722..270806Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1510915933:270722..270806TCONS_00055728-exon-scaffold_258-1510915933:270722..270806Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1575043694:270722..270806TCONS_00055728-exon-scaffold_258-1575043694:270722..270806Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1491911889:271020..271419TCONS_00055728-exon-scaffold_258-1491911889:271020..271419Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1510915933:271020..271419TCONS_00055728-exon-scaffold_258-1510915933:271020..271419Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1575043694:271020..271419TCONS_00055728-exon-scaffold_258-1575043694:271020..271419Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1491911889:271545..271941TCONS_00055728-exon-scaffold_258-1491911889:271545..271941Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1510915933:271545..271941TCONS_00055728-exon-scaffold_258-1510915933:271545..271941Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1575043694:271545..271941TCONS_00055728-exon-scaffold_258-1575043694:271545..271941Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1491911889:272061..272216TCONS_00055728-exon-scaffold_258-1491911889:272061..272216Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1510915933:272061..272216TCONS_00055728-exon-scaffold_258-1510915933:272061..272216Clytia hemisphaericaexon
TCONS_00055728-exon-scaffold_258-1575043694:272061..272216TCONS_00055728-exon-scaffold_258-1575043694:272061..272216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:270139..272216 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.89577	0.856858	0.679782	0.755727	1.03716	0.738432	1.67887	1.94258	1.25586	1.9515	1.54018	1.73669	2.10584	1.78074	0.978909	1.13397	0.72165	1.47147	1.28232	1.08023	2.04599	1.00555	0.450011	0.898809	1.39562	1.63577	1.44358	0.796144	1.78098	1.27507
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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