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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055694 ID=TCONS_00055694|Name=TCONS_00055694|organism=Clytia hemisphaerica|type=transcript|length=2264bp
NNCATCTCAAAATTGTTGATCCAAAGTTTGCGAAGGTGATCAGGAAGCAC
ATCGTCCCAGTCGAACTTTTGGATAACAAGGTCATGAAGATCAAGCTTGA
ACTGTGCGGTTATGGGAGTAACTCTTCCAAGAAGATCGAAAACTTCCCCG
ACTTTTGATGCGCAGTGACGTCTTGTTAGCTTGTCAGGGATGATGTTGGT
TGATGATGCTGATTTCTTTCCTCTTCTCTTTGGAGCAAAGTTCATTTCCC
CAATGTTCAATGAGATGACATCTTGCTTTGGAAACCACTTCATTCCTGCA
ACGGTTACACTCTGTTGATTTTCACTCATTGTCTCCGGTGGATCTTCTCC
TGAGATGACGATACCTTTTAACTGAAATCCACCTTTGTTGACGACTTGTT
CGAGCTCCTGAGAGCGTTGACGTGCAAGTTCGATCGaattttctccaatt
ttctCCGCAATCATCTACATATGTATCATTGAAAATGATCTTGGATGCCT
CTGGATACAGGTCTTGTGATAGTCTGGCAATTTCTCGGAGGGCATATTCA
GATTGATTCCCTGCGGATCGAACACCGTAAATTAAAGTCTTTATCACCTT
TTCCTCTGGTATTCTTTGTGGATCAAGCTCCTCTTGCCATACGTATCGTT
GATAACACCANATTGATTCCCTGCGGATCGAACACCGTAAATTAAAGTCT
TTATCACCTTTTCCTCTGGTATTCTTTGTGGATCAAGCTCCTCTTGCCAT
ACGTATCGTTGACAACACCAGTGTTCTTCACACAATTTGACAGTGTTGTA
CATCTTTGATACATCTGTGGTGAATGCAGCTCTGTGGATCAAGAAGCGAA
TAGCGATTTCTTGGAGAAGGTTCATGTTGTTGCGACCCTTTGCAATGATG
TCGTTTAAACTGAAGCCGGTTGATGTCTGTGATGAGACGTCAAATACGAC
TCGGCATGGGGTGCTGACTGATCCTGGCTTCCATACCGCTCGCCATAGGA
TGAAATGCTTCGTCTGAATCTGAAGTTGACGTTGAATGTCATTTGGCAAA
TTGCGTACATAATCGACAAATCCGAGATTTTGTAACTTCTTTTCGGAGTT
GATGATATCCTCCTTGTCTTTGAGGTTCTCCTTCCTGTTGAGTTTGCGTA
ATTGTTGTTGATATACTTTCAAGGCTTTGTCTTTATTGGGTGCAAGCTTT
ACATCCGGGTTGTGAGTGAATGGAAGTTTTGCTGTGATGATGTTTGTTTC
TTCATTGATGTGAATCGACTTGGCAATGAGGTGTTGCTCCACCTCTTCTT
TGATGCTGATATTCTCGGTTGCACCGTGGCTCTTGCAATCCTTGCAGTTC
CGACAGTTAACGCATCGGTATAGAATTTCACTACCTGTCTTCTCTGCAAG
ATCGAACATGTGATGTGATTGGACTTCTGGGTTGATGTCGAATTTGTCAT
TACCGTGACCAATGAATGATAGGGATGCAAAGTAGGTCAGCATTGGTAAC
CTCAGATTGAAGAGTGTGTTGTAATGCTTCTTGTGGATCTCGTCAAATGA
TGAATGTGGACCACCAAGTACACCTCTACCGTCTGGACCATTGAAAACAG
ATTCGAATACTGATAAGCCAGTTGACATTTGGAAGATGAGTTTGGGATGG
ACATTCAAGTACCTGACGCCAATCATGATGTCGACGTCTCCGCCAATGGA
TTGTGGAAGCGATGGGAGTTTTGATACATCACCAGTTGTTGAGTAGGCTC
TTTGTAGATCTGATATTGCTGGTGTGAGAGGATACACTGGAAATGTTTGC
GTAATCTGATCAAGGCATATACCTCTCATCGGGATCATGTCACCATCGTG
CAGAGGTAGGTTGACAAGATAGATGCCATGTGAGGATTGAGTTGATGTTC
CACCCACACCACCAATGTTGACACTTCCACTGAAGATTTGGGTAGCATAT
GATCCTAATCGGTTGATTGCAGATTTTCGAATGACAAAGTCACTGCAGCC
ATTGTCGAAGAATACTTTGAACTTCTGATTGTTGACCAAAATTTGTTGTA
ATAGGTAGATGCCAGTGCTTGAATGATGGATGTTGTCAGATGGCATGGCA
TTGATGTGACAGTCAGTGTGAAATGAGACTTTGATCTCCTTGATGAAGGT
TGGAAGCTGTTGATTTCGATTGATGAATTTGTCTTTAAAACGTTGAAGAA
GAGTTTGATTGTCATCTGTATCTTTGTGATCATCACAGACTAATACGTGC
TTCTTAACAGTCNN Run BLAST on NCBI protein sequence of TCONS_00055694-protein >TCONS_00055694-protein ID=TCONS_00055694-protein|Name=TCONS_00055694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp
XTVKKHVLVCDDHKDTDDNQTLLQRFKDKFINRNQQLPTFIKEIKVSFHT
DCHINAMPSDNIHHSSTGIYLLQQILVNNQKFKVFFDNGCSDFVIRKSAI
NRLGSYATQIFSGSVNIGGVGGTSTQSSHGIYLVNLPLHDGDMIPMRGIC
LDQITQTFPVYPLTPAISDLQRAYSTTGDVSKLPSLPQSIGGDVDIMIGV
RYLNVHPKLIFQMSTGLSVFESVFNGPDGRGVLGGPHSSFDEIHKKHYNT
LFNLRLPMLTYFASLSFIGHGNDKFDINPEVQSHHMFDLAEKTGSEILYR
CVNCRNCKDCKSHGATENISIKEEVEQHLIAKSIHINEETNIITAKLPFT
HNPDVKLAPNKDKALKVYQQQLRKLNRKENLKDKEDIINSEKKLQNLGFV
DYVRNLPNDIQRQLQIQTKHFILWRAVWKPGSVSTPCRVVFDVSSQTSTG
FSLNDIIAKGRNNMNLLQEIAIRFLIHRAAFTTDVSKMYNTVKLCEEHWC
CQRYVWQEELDPQRIPEEKVIKTLIYGVRSAGNQXGVINDTYGKRSLIHK
EYQRKR Run BLAST on NCBI transcript from alignment at scaffold_256:96839..99102 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055694 ID=TCONS_00055694|Name=TCONS_00055694|organism=Clytia hemisphaerica|type=transcript|length=2264bp|location=Sequence derived from alignment at scaffold_256:96839..99102 (Clytia hemisphaerica)
NNGACTGTTAAGAAGCACGTATTAGTCTGTGATGATCACAAAGATACAGA
TGACAATCAAACTCTTCTTCAACGTTTTAAAGACAAATTCATCAATCGAA
ATCAACAGCTTCCAACCTTCATCAAGGAGATCAAAGTCTCATTTCACACT
GACTGTCACATCAATGCCATGCCATCTGACAACATCCATCATTCAAGCAC
TGGCATCTACCTATTACAACAAATTTTGGTCAACAATCAGAAGTTCAAAG
TATTCTTCGACAATGGCTGCAGTGACTTTGTCATTCGAAAATCTGCAATC
AACCGATTAGGATCATATGCTACCCAAATCTTCAGTGGAAGTGTCAACAT
TGGTGGTGTGGGTGGAACATCAACTCAATCCTCACATGGCATCTATCTTG
TCAACCTACCTCTGCACGATGGTGACATGATCCCGATGAGAGGTATATGC
CTTGATCAGATTACGCAAACATTTCCAGTGTATCCTCTCACACCAGCAAT
ATCAGATCTACAAAGAGCCTACTCAACAACTGGTGATGTATCAAAACTCC
CATCGCTTCCACAATCCATTGGCGGAGACGTCGACATCATGATTGGCGTC
AGGTACTTGAATGTCCATCCCAAACTCATCTTCCAAATGTCAACTGGCTT
ATCAGTATTCGAATCTGTTTTCAATGGTCCAGACGGTAGAGGTGTACTTG
GTGGTCCACATTCATCATTTGACGAGATCCACAAGAAGCATTACAACACA
CTCTTCAATCTGAGGTTACCAATGCTGACCTACTTTGCATCCCTATCATT
CATTGGTCACGGTAATGACAAATTCGACATCAACCCAGAAGTCCAATCAC
ATCACATGTTCGATCTTGCAGAGAAGACAGGTAGTGAAATTCTATACCGA
TGCGTTAACTGTCGGAACTGCAAGGATTGCAAGAGCCACGGTGCAACCGA
GAATATCAGCATCAAAGAAGAGGTGGAGCAACACCTCATTGCCAAGTCGA
TTCACATCAATGAAGAAACAAACATCATCACAGCAAAACTTCCATTCACT
CACAACCCGGATGTAAAGCTTGCACCCAATAAAGACAAAGCCTTGAAAGT
ATATCAACAACAATTACGCAAACTCAACAGGAAGGAGAACCTCAAAGACA
AGGAGGATATCATCAACTCCGAAAAGAAGTTACAAAATCTCGGATTTGTC
GATTATGTACGCAATTTGCCAAATGACATTCAACGTCAACTTCAGATTCA
GACGAAGCATTTCATCCTATGGCGAGCGGTATGGAAGCCAGGATCAGTCA
GCACCCCATGCCGAGTCGTATTTGACGTCTCATCACAGACATCAACCGGC
TTCAGTTTAAACGACATCATTGCAAAGGGTCGCAACAACATGAACCTTCT
CCAAGAAATCGCTATTCGCTTCTTGATCCACAGAGCTGCATTCACCACAG
ATGTATCAAAGATGTACAACACTGTCAAATTGTGTGAAGAACACTGGTGT
TGTCAACGATACGTATGGCAAGAGGAGCTTGATCCACAAAGAATACCAGA
GGAAAAGGTGATAAAGACTTTAATTTACGGTGTTCGATCCGCAGGGAATC
AATNTGGTGTTATCAACGATACGTATGGCAAGAGGAGCTTGATCCACAAA
GAATACCAGAGGAAAAGGTGATAAAGACTTTAATTTACGGTGTTCGATCC
GCAGGGAATCAATCTGAATATGCCCTCCGAGAAATTGCCAGACTATCACA
AGACCTGTATCCAGAGGCATCCAAGATCATTTTCAATGATACATATGTAG
ATGATTGCGGagaaaattggagaaaattCGATCGAACTTGCACGTCAACG
CTCTCAGGAGCTCGAACAAGTCGTCAACAAAGGTGGATTTCAGTTAAAAG
GTATCGTCATCTCAGGAGAAGATCCACCGGAGACAATGAGTGAAAATCAA
CAGAGTGTAACCGTTGCAGGAATGAAGTGGTTTCCAAAGCAAGATGTCAT
CTCATTGAACATTGGGGAAATGAACTTTGCTCCAAAGAGAAGAGGAAAGA
AATCAGCATCATCAACCAACATCATCCCTGACAAGCTAACAAGACGTCAC
TGCGCATCAAAAGTCGGGGAAGTTTTCGATCTTCTTGGAAGAGTTACTCC
CATAACCGCACAGTTCAAGCTTGATCTTCATGACCTTGTTATCCAAAAGT
TCGACTGGGACGATGTGCTTCCTGATCACCTTCGCAAACTTTGGATCAAC
AATTTTGAGATGNN Coding sequence (CDS) from alignment at scaffold_256:96839..99102 >TCONS_00055694 ID=TCONS_00055694|Name=TCONS_00055694|organism=Clytia hemisphaerica|type=CDS|length=1671bp|location=Sequence derived from alignment at scaffold_256:96839..99102 (Clytia hemisphaerica)
NNGACTGTTAAGAAGCACGTATTAGTCTGTGATGATCACAAAGATACAGA
TGACAATCAAACTCTTCTTCAACGTTTTAAAGACAAATTCATCAATCGAA
ATCAACAGCTTCCAACCTTCATCAAGGAGATCAAAGTCTCATTTCACACT
GACTGTCACATCAATGCCATGCCATCTGACAACATCCATCATTCAAGCAC
TGGCATCTACCTATTACAACAAATTTTGGTCAACAATCAGAAGTTCAAAG
TATTCTTCGACAATGGCTGCAGTGACTTTGTCATTCGAAAATCTGCAATC
AACCGATTAGGATCATATGCTACCCAAATCTTCAGTGGAAGTGTCAACAT
TGGTGGTGTGGGTGGAACATCAACTCAATCCTCACATGGCATCTATCTTG
TCAACCTACCTCTGCACGATGGTGACATGATCCCGATGAGAGGTATATGC
CTTGATCAGATTACGCAAACATTTCCAGTGTATCCTCTCACACCAGCAAT
ATCAGATCTACAAAGAGCCTACTCAACAACTGGTGATGTATCAAAACTCC
CATCGCTTCCACAATCCATTGGCGGAGACGTCGACATCATGATTGGCGTC
AGGTACTTGAATGTCCATCCCAAACTCATCTTCCAAATGTCAACTGGCTT
ATCAGTATTCGAATCTGTTTTCAATGGTCCAGACGGTAGAGGTGTACTTG
GTGGTCCACATTCATCATTTGACGAGATCCACAAGAAGCATTACAACACA
CTCTTCAATCTGAGGTTACCAATGCTGACCTACTTTGCATCCCTATCATT
CATTGGTCACGGTAATGACAAATTCGACATCAACCCAGAAGTCCAATCAC
ATCACATGTTCGATCTTGCAGAGAAGACAGGTAGTGAAATTCTATACCGA
TGCGTTAACTGTCGGAACTGCAAGGATTGCAAGAGCCACGGTGCAACCGA
GAATATCAGCATCAAAGAAGAGGTGGAGCAACACCTCATTGCCAAGTCGA
TTCACATCAATGAAGAAACAAACATCATCACAGCAAAACTTCCATTCACT
CACAACCCGGATGTAAAGCTTGCACCCAATAAAGACAAAGCCTTGAAAGT
ATATCAACAACAATTACGCAAACTCAACAGGAAGGAGAACCTCAAAGACA
AGGAGGATATCATCAACTCCGAAAAGAAGTTACAAAATCTCGGATTTGTC
GATTATGTACGCAATTTGCCAAATGACATTCAACGTCAACTTCAGATTCA
GACGAAGCATTTCATCCTATGGCGAGCGGTATGGAAGCCAGGATCAGTCA
GCACCCCATGCCGAGTCGTATTTGACGTCTCATCACAGACATCAACCGGC
TTCAGTTTAAACGACATCATTGCAAAGGGTCGCAACAACATGAACCTTCT
CCAAGAAATCGCTATTCGCTTCTTGATCCACAGAGCTGCATTCACCACAG
ATGTATCAAAGATGTACAACACTGTCAAATTGTGTGAAGAACACTGGTGT
TGTCAACGATACGTATGGCAAGAGGAGCTTGATCCACAAAGAATACCAGA
GGAAAAGGTGATAAAGACTTTAATTTACGGTGTTCGATCCGCAGGGAATC
AATNTGGTGTTATCAACGATACGTATGGCAAGAGGAGCTTGATCCACAAA
GAATACCAGAGGAAAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055694-exon-scaffold_256-1491911889:96839..99102 | TCONS_00055694-exon-scaffold_256-1491911889:96839..99102 | Clytia hemisphaerica | exon |
| TCONS_00055694-exon-scaffold_256-1510915933:96839..99102 | TCONS_00055694-exon-scaffold_256-1510915933:96839..99102 | Clytia hemisphaerica | exon |
| TCONS_00055694-exon-scaffold_256-1575043694:96839..99102 | TCONS_00055694-exon-scaffold_256-1575043694:96839..99102 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_256 | supercontig | scaffold_256:96839..99102 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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